IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
202	 44.36	0	239796..240212	+	138	148652019	rplS	PsycPRwf_0203	-	50S ribosomal protein L19
203	 48.98	0	240499..242013	+	504	148652020	-	PsycPRwf_0204	-	hypothetical protein
204	 50.14	+1	242157..244001	+	614	148652021	-	PsycPRwf_0205	-	excinuclease ABC, C subunit
205	 41.82	-1	244034..245140	-	368	148652022	-	PsycPRwf_0206	-	IS605 family transposase OrfB
206	 50.88	+1	245311..246102	-	263	148652023	-	PsycPRwf_0207	-	hypothetical protein
207	 52.85	+2	246171..247502	-	443	148652024	-	PsycPRwf_0208	-	Beta-ketoacyl synthase-like protein
208	 48.66	0	247575..247985	-	136	148652025	-	PsycPRwf_0209	-	hypothetical protein
209	 42.50	-1	248056..248415	-	119	148652026	-	PsycPRwf_0210	-	hypothetical protein
210	 45.65	0	248480..248812	-	110	148652027	-	PsycPRwf_0211	-	BolA family protein
211	 49.50	+1	249034..249837	-	267	148652028	-	PsycPRwf_0212	-	peptidase M48, Ste24p
212	 49.03	0	251656..252891	+	411	148652029	-	PsycPRwf_0213	-	trimethylamine-N-oxide reductase c-type cytochrome TorC
213	 51.53	+1	252948..255470	+	840	148652030	-	PsycPRwf_0214	-	trimethylamine-N-oxide reductase TorA
214	 49.55	+1	255591..256256	+	221	148652031	-	PsycPRwf_0215	-	cytoplasmic chaperone TorD family protein
215	 51.56	+1	256323..257633	+	436	148652032	-	PsycPRwf_0216	-	molybdenum cofactor synthesis domain-containing protein
216	 48.02	0	257966..259279	+	437	148652033	moaA	PsycPRwf_0217	-	molybdenum cofactor biosynthesis protein A
217	 48.48	0	259365..259892	+	175	148652034	-	PsycPRwf_0218	-	molybdenum cofactor biosynthesis protein B
218	 50.31	+1	259897..260715	+	272	148652035	-	PsycPRwf_0219	-	molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
219	 49.21	0	260928..261494	+	188	148652036	-	PsycPRwf_0220	-	molybdenum cofactor biosynthesis protein C
220	 45.27	0	261699..261941	+	80	148652037	-	PsycPRwf_0221	-	molybdopterin converting factor, subunit 1
221	 47.29	0	261973..262488	+	171	148652038	-	PsycPRwf_0222	-	molybdopterin biosynthesis MoaE protein
222	 50.07	+1	262616..263374	-	252	148652039	-	PsycPRwf_0223	-	molybdate ABC transporter, inner membrane subunit
223	 49.08	0	263587..264513	-	308	148652040	-	PsycPRwf_0224	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
224	 47.37	0	264720..265916	-	398	148652041	-	PsycPRwf_0225	-	aromatic amino acid aminotransferase
225	 47.74	0	266107..267591	+	494	148652042	-	PsycPRwf_0226	-	Na+/H+ antiporter NhaC
226	 45.08	0	267648..268703	+	351	148652043	-	PsycPRwf_0227	-	UDP-glucose 4-epimerase
227	 45.11	0	268787..270280	-	497	148652044	-	PsycPRwf_0228	-	hypothetical protein
228	 38.07	-2	270520..272040	-	506	148652045	-	PsycPRwf_0229	-	NAD-dependent epimerase/dehydratase
229	 34.22	-2	272116..273240	-	374	148652046	-	PsycPRwf_0230	-	glycosyl transferase, group 1
230	 33.95	-2	273465..274601	-	378	148652047	-	PsycPRwf_0231	-	glycosyl transferase, group 1
231	 38.10	-2	275575..275700	-	41	148652048	-	PsycPRwf_0233	-	hypothetical protein
232	 46.26	0	275990..276577	-	195	148652049	-	PsycPRwf_0234	-	integrase catalytic subunit
233	 44.23	0	276694..277005	-	103	148652050	-	PsycPRwf_0235	-	transposase IS3/IS911 family protein
234	 32.20	-2	277178..278323	-	381	148652051	-	PsycPRwf_0236	-	hypothetical protein
235	 39.70	-1	279538..279804	-	88	148652052	-	PsycPRwf_0240	-	transposase IS3/IS911 family protein
236	 36.90	-2	279954..281918	-	654	148652053	-	PsycPRwf_0241	-	asparagine synthase (glutamine-hydrolyzing)
237	 32.38	-2	281928..282974	-	348	148652054	-	PsycPRwf_0242	-	glycosyl transferase, group 1
238	 35.59	-2	283023..284441	-	472	148652055	-	PsycPRwf_0243	-	polysaccharide biosynthesis protein
239	 33.67	-2	284432..285613	-	393	148652056	-	PsycPRwf_0244	-	glycosyl transferase, group 1
240	 42.64	0	285617..286690	-	357	148652057	-	PsycPRwf_0245	-	DegT/DnrJ/EryC1/StrS aminotransferase
241	 40.89	-1	286731..287312	-	193	148652058	-	PsycPRwf_0246	-	hexapaptide repeat-containing transferase
242	 36.99	-2	287330..288286	-	318	148652059	-	PsycPRwf_0247	-	oxidoreductase domain-containing protein
243	 44.57	0	288338..289360	-	340	148652060	-	PsycPRwf_0248	-	NAD-dependent epimerase/dehydratase
244	 40.79	-1	289427..290713	-	428	148652061	-	PsycPRwf_0249	-	UDP-glucose/GDP-mannose dehydrogenase
245	 41.79	-1	290754..292751	-	665	148652062	-	PsycPRwf_0250	-	polysaccharide biosynthesis protein CapD
246	 39.10	-2	292810..295065	-	751	148652063	-	PsycPRwf_0251	-	non-specific protein-tyrosine kinase
247	 41.20	-1	295143..295574	-	143	148652064	-	PsycPRwf_0252	-	protein tyrosine phosphatase
248	 43.48	0	295631..296734	-	367	148652065	-	PsycPRwf_0253	-	polysaccharide export protein
249	 45.36	0	296953..299181	-	742	148652066	-	PsycPRwf_0254	-	UvrD/REP helicase
250	 49.74	+1	299255..300424	-	389	148652067	-	PsycPRwf_0255	-	alpha/beta hydrolase fold
251	 51.21	+1	300465..301583	-	372	148652068	-	PsycPRwf_0256	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
252	 52.35	+1	301786..303105	-	439	148652069	-	PsycPRwf_0257	-	recombination factor protein RarA
253	 48.13	0	303521..304216	+	231	148652070	-	PsycPRwf_0258	-	hypothetical protein
254	 51.91	+1	304213..305208	+	331	148652071	-	PsycPRwf_0259	-	hypothetical protein
255	 45.04	0	305422..306702	-	426	148652072	-	PsycPRwf_0260	-	citrate synthase I
256	 42.33	-1	308231..308608	+	125	148652073	-	PsycPRwf_0261	-	succinate dehydrogenase, cytochrome b556 subunit
257	 46.35	0	308608..308991	+	127	148652074	-	PsycPRwf_0262	-	succinate dehydrogenase, hydrophobic membrane anchor
258	 46.79	0	309198..311048	+	616	148652075	sdhA	PsycPRwf_0263	-	succinate dehydrogenase flavoprotein subunit
259	 45.99	0	311177..311887	+	236	148652076	sdhB	PsycPRwf_0264	-	succinate dehydrogenase iron-sulfur subunit
260	 39.74	-1	312460..313161	-	233	148652077	-	PsycPRwf_0265	-	IS1 transposase
261	 47.58	0	313445..316321	+	958	148652078	kgd	PsycPRwf_0266	-	alpha-ketoglutarate decarboxylase
262	 47.64	0	316529..317758	+	409	148652079	-	PsycPRwf_0267	-	2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
263	 46.78	0	317980..319437	+	485	148652080	-	PsycPRwf_0268	-	dihydrolipoamide dehydrogenase
264	 44.19	0	319653..320822	+	389	148652081	sucC	PsycPRwf_0269	-	succinyl-CoA synthetase subunit beta
265	 46.80	0	320880..321755	+	291	148652082	-	PsycPRwf_0270	-	succinyl-CoA synthetase, alpha subunit
266	 47.33	0	321963..322841	+	292	148652083	-	PsycPRwf_0271	-	nucleotidyl transferase
267	 49.65	+1	322978..324669	+	563	148652084	-	PsycPRwf_0272	-	glucose-6-phosphate isomerase
268	 48.99	0	324762..326102	+	446	148652085	-	PsycPRwf_0273	-	UDP-glucose/GDP-mannose dehydrogenase, dimerisation
269	 48.43	0	326234..327697	-	487	148652086	-	PsycPRwf_0274	-	phosphomannomutase
270	 47.28	0	327789..329057	-	422	148652087	-	PsycPRwf_0275	-	UDP-glucose/GDP-mannose dehydrogenase, dimerisation
271	 49.08	0	329219..330088	+	289	148652088	mazG	PsycPRwf_0276	-	nucleoside triphosphate pyrophosphohydrolase
272	 49.08	0	330054..330434	+	126	148652089	-	PsycPRwf_0277	-	helix-hairpin-helix repeat-containing competence protein ComEA
273	 46.89	0	330478..331008	-	176	148652090	-	PsycPRwf_0278	-	hypothetical protein
274	 49.65	+1	331231..333099	-	622	148652091	-	PsycPRwf_0279	-	Na+/solute symporter
275	 44.06	0	333104..333364	-	86	148652092	-	PsycPRwf_0280	-	membrane protein-like protein
276	 46.72	0	333983..335491	+	502	148652093	-	PsycPRwf_0281	-	amino acid carrier protein
277	 49.52	+1	335602..337269	-	555	148652094	-	PsycPRwf_0282	-	electron-transferring-flavoprotein dehydrogenase
278	 47.31	0	337754..338404	+	216	148652095	-	PsycPRwf_0283	-	hypothetical protein
279	 51.52	+1	338477..339499	+	340	148652096	-	PsycPRwf_0284	-	glutamate racemase
280	 47.08	0	339673..339963	+	96	148652097	-	PsycPRwf_0285	-	hypothetical protein
281	 50.60	+1	340063..341487	-	474	148652098	-	PsycPRwf_0286	-	lytic murein transglycosylase
282	 48.65	0	341796..342761	-	321	148652099	-	PsycPRwf_0287	-	aldose 1-epimerase
283	 48.05	0	342832..343524	-	230	148652100	-	PsycPRwf_0288	-	thiopurine S-methyltransferase
284	 44.32	0	343681..344208	-	175	148652101	-	PsycPRwf_0289	-	peptide methionine sulfoxide reductase
285	 47.76	0	344360..345184	+	274	148652102	-	PsycPRwf_0290	-	putative methyltransferase
286	 47.65	0	345273..346334	+	353	148652103	-	PsycPRwf_0291	-	putative methyltransferase
287	 47.57	0	346462..347634	+	390	148652104	-	PsycPRwf_0292	-	hypothetical protein
288	 45.02	0	347669..347899	-	76	148652105	-	PsycPRwf_0293	-	hypothetical protein
289	 46.67	0	348184..350013	+	609	148652106	argS	PsycPRwf_0294	-	arginyl-tRNA synthetase
290	 48.79	0	350161..350988	+	275	148652107	-	PsycPRwf_0295	-	sporulation domain-containing protein
291	 48.48	0	351076..351834	+	252	148652108	-	PsycPRwf_0296	-	transcriptional regulator IclR-like protein
292	 49.68	+1	351928..352857	-	309	148652109	-	PsycPRwf_0297	-	3-hydroxyisobutyrate dehydrogenase
293	 50.16	+1	352971..354254	-	427	148652110	-	PsycPRwf_0298	-	enoyl-CoA hydratase/isomerase
294	 49.43	+1	354304..355086	-	260	148652111	-	PsycPRwf_0299	-	enoyl-CoA hydratase
295	 49.70	+1	355277..356443	-	388	148652112	-	PsycPRwf_0300	-	acyl-CoA dehydrogenase domain-containing protein
296	 49.53	+1	356685..358172	-	495	148652113	-	PsycPRwf_0301	-	methylmalonate-semialdehyde dehydrogenase
297	 51.71	+1	358463..360475	-	670	148652114	-	PsycPRwf_0302	-	propionyl-CoA synthetase
298	 48.64	0	360701..361909	-	402	148652115	-	PsycPRwf_0303	-	major facilitator transporter
299	 47.31	0	362108..363037	-	309	148652116	-	PsycPRwf_0304	-	short-chain dehydrogenase/reductase SDR
300	 45.23	0	363423..364700	-	425	148652117	clpX	PsycPRwf_0305	-	ATP-dependent protease ATP-binding subunit
301	 47.72	0	364905..365627	-	240	148652118	-	PsycPRwf_0306	-	ATP-dependent Clp protease, proteolytic subunit ClpP
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.