IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2264	 46.25	0	2850081..2850839	-	252	148654081	-	PsycPRwf_2284	-	NusB antitermination factor
2265	 47.05	0	2850979..2851503	-	174	148654082	-	PsycPRwf_2285	-	riboflavin synthase
2266	 51.88	+1	2851735..2852505	-	256	148654083	-	PsycPRwf_2286	-	imidazole glycerol phosphate synthase subunit HisF
2267	 46.48	0	2852842..2854704	+	620	148654084	-	PsycPRwf_2287	-	Na+/Pi-cotransporter
2268	 45.89	0	2854850..2856091	+	413	148654085	-	PsycPRwf_2288	-	homoserine kinase
2269	 46.32	0	2856321..2856551	+	76	148654086	-	PsycPRwf_2289	-	hypothetical protein
2270	 47.32	0	2856611..2857525	+	304	148654087	-	PsycPRwf_2290	-	glutamine amidotransferase, class-II
2271	 51.39	+1	2857520..2858095	-	191	148654088	-	PsycPRwf_2291	-	SecC motif-containing protein
2272	 50.04	+1	2858343..2860574	+	743	148654089	-	PsycPRwf_2292	-	neutral/alkaline nonlysosomal ceramidase
2273	 43.75	0	2860761..2861144	-	127	148654090	-	PsycPRwf_2293	-	hypothetical protein
2274	 41.10	-1	2861418..2861726	-	102	148654091	-	PsycPRwf_2294	-	hypothetical protein
2275	 45.37	0	2861836..2862882	-	348	148654092	-	PsycPRwf_2295	-	DNA/RNA non-specific endonuclease
2276	 46.93	0	2863405..2864691	+	428	148654093	-	PsycPRwf_2296	-	iron-containing alcohol dehydrogenase
2277	 43.61	0	2864788..2865702	-	304	148654094	-	PsycPRwf_2297	-	LysR family transcriptional regulator
2278	 42.89	0	2865868..2866275	+	135	148654095	-	PsycPRwf_2298	-	DoxX family protein
2279	 42.86	0	2866819..2867364	+	181	148654096	-	PsycPRwf_2299	-	NADPH-dependent FMN reductase
2280	 42.45	-1	2867366..2868133	+	255	148654097	-	PsycPRwf_2300	-	hypothetical protein
2281	 41.33	-1	2868524..2869198	+	224	148654098	-	PsycPRwf_2301	-	isochorismatase hydrolase
2282	 39.76	-1	2869629..2869955	-	108	148654099	-	PsycPRwf_2302	-	acetyltransferase-like protein
2283	 46.08	0	2870361..2871074	+	237	148654100	-	PsycPRwf_2303	-	pirin domain-containing protein
2284	 44.59	0	2871242..2872174	+	310	148654101	-	PsycPRwf_2304	-	pirin domain-containing protein
2285	 43.63	0	2872444..2873055	+	203	148654102	-	PsycPRwf_2305	-	oxidoreductase related to nitroreductase-like protein
2286	 46.84	0	2873191..2874012	-	273	148654103	-	PsycPRwf_2306	-	short-chain dehydrogenase/reductase SDR
2287	 46.70	0	2873991..2875097	-	368	148654104	-	PsycPRwf_2307	-	hypothetical protein
2288	 47.48	0	2875243..2875956	-	237	148654105	-	PsycPRwf_2308	-	pseudouridine synthase
2289	 41.90	-1	2876261..2876587	+	108	148654106	-	PsycPRwf_2309	-	thioredoxin
2290	 45.88	0	2877323..2878621	+	432	148654107	rho	PsycPRwf_2310	-	transcription termination factor Rho
2291	 47.15	0	2878957..2879202	+	81	148654108	-	PsycPRwf_2311	-	17 kDa surface antigen
2292	 49.83	+1	2879388..2880266	-	292	148654109	-	PsycPRwf_2312	-	protein of unknown function, zinc metallopeptidase putative
2293	 49.35	+1	2880849..2881235	+	128	148654110	-	PsycPRwf_2313	-	hypothetical protein
2294	 40.19	-1	2881401..2881721	-	106	148654111	-	PsycPRwf_2314	-	histone family protein DNA-binding protein
2295	 48.22	0	2881826..2884237	-	803	148654112	-	PsycPRwf_2315	-	phenylalanyl-tRNA synthetase, beta subunit
2296	 49.02	0	2884346..2885473	-	375	148654113	-	PsycPRwf_2316	-	phenylalanyl-tRNA synthetase, alpha subunit
2297	 44.82	0	2885710..2886066	-	118	148654114	rplT	PsycPRwf_2317	-	50S ribosomal protein L20
2298	 42.93	0	2886149..2886346	-	65	148654115	rpmI	PsycPRwf_2318	-	50S ribosomal protein L35
2299	 48.92	0	2886828..2887757	+	309	148654116	-	PsycPRwf_2319	-	phosphoribosyl-AMP cyclohydrolase
2300	 44.31	0	2887879..2888133	+	84	148654117	-	PsycPRwf_2320	-	twin arginine-targeting protein translocase
2301	 48.37	0	2888170..2888934	+	254	148654118	-	PsycPRwf_2321	-	twin-arginine translocation protein, TatB subunit
2302	 44.00	0	2888931..2889764	+	277	148654119	-	PsycPRwf_2322	-	Sec-independent protein translocase, TatC subunit
2303	 48.62	0	2890139..2891656	+	505	148654120	-	PsycPRwf_2323	-	superfamily I DNA/RNA helicase-like protein
2304	 51.65	+1	2891708..2892679	+	323	148654121	-	PsycPRwf_2324	-	dihydrouridine synthase, DuS
2305	 48.12	0	2892735..2893160	-	141	148654122	-	PsycPRwf_2325	-	membrane protein-like protein
2306	 48.99	0	2893181..2893627	-	148	148654123	-	PsycPRwf_2326	-	OsmC family protein
2307	 46.58	0	2893846..2895732	-	628	148654124	-	PsycPRwf_2327	-	outer membrane autotransporter
2308	 47.70	0	2896350..2896871	+	173	148654125	-	PsycPRwf_2328	-	dinucleoside polyphosphate hydrolase
2309	 48.98	0	2897055..2897891	-	278	148654126	-	PsycPRwf_2329	-	hypothetical protein
2310	 47.44	0	2898112..2898990	+	292	148654127	-	PsycPRwf_2330	-	prolipoprotein diacylglyceryl transferase
2311	 45.99	0	2899060..2899920	+	286	148654128	thyA	PsycPRwf_2331	-	thymidylate synthase
2312	 45.53	0	2900030..2900611	+	193	148654129	-	PsycPRwf_2332	-	dihydrofolate reductase
2313	 48.16	0	2900764..2902308	+	514	148654130	-	PsycPRwf_2333	-	phospholipase D/transphosphatidylase
2314	 48.79	0	2902452..2904275	-	607	148654131	-	PsycPRwf_2334	-	peptidase M24
2315	 45.84	0	2904432..2906006	-	524	148654132	-	PsycPRwf_2335	-	amino acid/peptide transporter
2316	 54.11	+2	2906293..2906706	-	137	148654133	-	PsycPRwf_2336	-	hypothetical protein
2317	 49.05	0	2906983..2908554	-	523	148654134	-	PsycPRwf_2337	-	apolipoprotein N-acyltransferase
2318	 52.45	+1	2908853..2911096	+	747	148654135	-	PsycPRwf_2338	-	ATP-dependent DNA helicase RecG
2319	 45.78	0	2911150..2913543	-	797	148654136	-	PsycPRwf_2339	-	TonB-dependent receptor
2320	 47.31	0	2913699..2916209	+	836	148654137	-	PsycPRwf_2340	-	TonB-dependent receptor
2321	 45.58	0	2916510..2917448	+	312	148654138	-	PsycPRwf_2341	-	hypothetical protein
2322	 50.09	+1	2917771..2919405	+	544	148654139	-	PsycPRwf_2342	-	flavoprotein involved in K+ transport-like protein
2323	 26.42	-2	2919507..2919665	-	52	148654140	-	PsycPRwf_2343	-	hypothetical protein
2324	 44.01	0	2919972..2920505	-	177	148654141	-	PsycPRwf_2344	-	hypothetical protein
2325	 40.55	-1	2920628..2921458	-	276	148654142	-	PsycPRwf_2345	-	N-acetyltransferase
2326	 53.24	+2	2921606..2922700	-	364	148654143	-	PsycPRwf_2346	-	membrane protein putative toxin regulator-like protein
2327	 48.38	0	2922973..2923557	+	194	148654144	-	PsycPRwf_2347	-	appr-1-p processing domain-containing protein
2328	 50.81	+1	2923589..2925013	-	474	148654145	-	PsycPRwf_2348	-	D-lactate dehydrogenase (cytochrome)
2329	 43.52	0	2925461..2926609	+	382	148654146	-	PsycPRwf_2349	-	OmpW family protein
2330	 48.16	0	2926750..2927484	+	244	148654147	-	PsycPRwf_2350	-	MOSC domain-containing protein
2331	 52.20	+1	2927609..2928175	-	188	148654148	-	PsycPRwf_2351	-	hypothetical protein
2332	 37.37	-2	2928534..2928632	+	32	148654149	-	PsycPRwf_2352	-	hypothetical protein
2333	 50.04	+1	2928847..2930175	+	442	148654150	-	PsycPRwf_2353	-	RND family efflux transporter MFP subunit
2334	 50.97	+1	2930366..2933449	+	1027	148654151	-	PsycPRwf_2354	-	acriflavin resistance protein
2335	 49.53	+1	2933549..2935258	+	569	148654152	-	PsycPRwf_2355	-	formate--tetrahydrofolate ligase
2336	 50.23	+1	2935812..2937308	+	498	148654153	-	PsycPRwf_2356	-	gluconate 2-dehydrogenase (acceptor)
2337	 48.91	0	2937414..2939012	+	532	148654154	-	PsycPRwf_2357	-	L-amino-acid oxidase
2338	 49.69	+1	2939065..2939718	+	217	148654155	-	PsycPRwf_2358	-	cytochrome c, class I
2339	 49.34	+1	2939765..2941357	-	530	148654156	-	PsycPRwf_2359	-	Mg chelatase, subunit ChlI
2340	 51.54	+1	2941494..2942405	+	303	148654157	-	PsycPRwf_2360	-	hypothetical protein
2341	 46.34	0	2942659..2944227	+	522	148654158	-	PsycPRwf_2361	-	coproporphyrinogen III oxidase
2342	 48.56	0	2944355..2946016	-	553	148654159	-	PsycPRwf_2362	-	thiamine pyrophosphate binding domain-containing protein
2343	 47.12	0	2946258..2947628	-	456	148654160	-	PsycPRwf_2363	-	hypothetical protein
2344	 46.69	0	2947864..2948724	-	286	148654161	-	PsycPRwf_2364	-	band 7 protein
2345	 47.05	0	2948886..2949359	-	157	148654162	-	PsycPRwf_2365	-	hypothetical protein
2346	 40.97	-1	2949591..2950166	-	191	148654163	-	PsycPRwf_2366	-	hypothetical protein
2347	 42.44	-1	2950554..2951135	-	193	148654164	-	PsycPRwf_2367	-	OmpA domain-containing protein
2348	 42.83	0	2951525..2952103	-	192	148654165	-	PsycPRwf_2368	-	OmpA domain-containing protein
2349	 45.50	0	2952405..2952971	-	188	148654166	-	PsycPRwf_2369	-	OmpA domain-containing protein
2350	 46.26	0	2953257..2954486	+	409	148654167	-	PsycPRwf_2370	-	aminotransferase, class I and II
2351	 44.29	0	2954689..2956614	-	641	148654168	-	PsycPRwf_2371	-	chaperone protein DnaK
2352	 44.55	0	2956891..2957496	-	201	148654169	-	PsycPRwf_2372	-	GrpE protein
2353	 49.71	+1	2957983..2959368	+	461	148654170	-	PsycPRwf_2373	-	hypothetical protein
2354	 47.04	0	2959444..2959866	+	140	148654171	-	PsycPRwf_2374	-	hypothetical protein
2355	 46.48	0	2960023..2960973	-	316	148654172	-	PsycPRwf_2375	-	hypothetical protein
2356	 48.92	0	2961031..2961819	-	262	148654173	-	PsycPRwf_2376	-	SUA5/yciO/yrdC domain-containing protein
2357	 48.66	0	2961854..2963119	-	421	148654174	-	PsycPRwf_2377	-	DNA protecting protein DprA
2358	 46.15	0	2963620..2964774	+	384	148654175	-	PsycPRwf_2378	-	cytochrome-c peroxidase
2359	 46.26	0	2964875..2966305	-	476	148654176	-	PsycPRwf_2379	-	threonine synthase
2360	 42.63	0	2966766..2967830	+	354	148654177	-	PsycPRwf_2380	-	alcohol dehydrogenase
2361	 40.12	-1	2967899..2968222	+	107	148654178	-	PsycPRwf_2381	-	putative polyhydroxyalkanoic acid system protein
2362	 47.39	0	2968399..2969985	-	528	148654179	-	PsycPRwf_2382	-	Fmu (Sun) domain-containing protein
2363	 48.62	0	2970224..2971270	-	348	148654180	-	PsycPRwf_2383	-	methionyl-tRNA formyltransferase
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.