IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2204	 47.70	0	2765108..2765803	+	231	148654021	-	PsycPRwf_2224	-	allophanate hydrolase subunit 1
2205	 48.33	0	2765825..2766784	+	319	148654022	-	PsycPRwf_2225	-	urea amidolyase related protein
2206	 46.01	0	2766774..2767538	+	254	148654023	-	PsycPRwf_2226	-	hypothetical protein
2207	 45.49	0	2767625..2768809	+	394	148654024	-	PsycPRwf_2227	-	branched-chain amino acid transport system II carrier protein
2208	 45.22	0	2768891..2769361	+	156	148654025	-	PsycPRwf_2228	-	biotin/lipoyl attachment domain-containing protein
2209	 40.56	-1	2769375..2770481	-	368	148654026	-	PsycPRwf_2229	-	IS605 family transposase OrfB
2210	 51.79	+1	2770688..2772085	+	465	148654027	anmK	PsycPRwf_2230	-	anhydro-N-acetylmuramic acid kinase
2211	 49.09	0	2772103..2772540	-	145	148654028	-	PsycPRwf_2231	-	thioredoxin
2212	 49.61	+1	2772835..2774628	+	597	148654029	-	PsycPRwf_2232	-	sulphate transporter
2213	 48.62	0	2774740..2775066	+	108	148654030	-	PsycPRwf_2233	-	hypothetical protein
2214	 45.65	0	2775159..2775491	+	110	148654031	-	PsycPRwf_2234	-	hypothetical protein
2215	 44.59	0	2775634..2777214	-	526	148654032	-	PsycPRwf_2235	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2216	 35.09	-2	2777661..2777888	+	75	148654033	-	PsycPRwf_2236	-	hypothetical protein
2217	 46.04	0	2778598..2780910	+	770	148654034	-	PsycPRwf_2237	-	ribonuclease R
2218	 44.31	0	2781049..2781804	-	251	148654035	-	PsycPRwf_2238	-	endonuclease/exonuclease/phosphatase
2219	 45.82	0	2782112..2783224	-	370	148654036	-	PsycPRwf_2239	-	hypothetical protein
2220	 47.27	0	2783776..2785914	+	712	148654037	-	PsycPRwf_2240	-	oligopeptidase A
2221	 50.41	+1	2785916..2786161	+	81	148654038	-	PsycPRwf_2241	-	hypothetical protein
2222	 47.65	0	2786343..2788004	-	553	148654039	-	PsycPRwf_2242	-	putative ABC transporter ATP-binding protein
2223	 45.74	0	2788448..2788729	+	93	148654040	-	PsycPRwf_2243	-	acetyltransferase-like protein
2224	 43.20	0	2788885..2789178	+	97	148654041	-	PsycPRwf_2244	-	transcriptional coactivator/pterin dehydratase
2225	 44.68	0	2789300..2790013	+	237	148654042	-	PsycPRwf_2245	-	hypothetical protein
2226	 48.54	0	2790010..2791206	-	398	148654043	-	PsycPRwf_2246	-	hypothetical protein
2227	 47.92	0	2791390..2792280	+	296	148654044	-	PsycPRwf_2247	-	CBS domain-containing protein
2228	 49.86	+1	2792270..2793310	+	346	148654045	-	PsycPRwf_2248	-	patatin
2229	 46.42	0	2793397..2793969	-	190	148654046	-	PsycPRwf_2249	-	hypothetical protein
2230	 47.85	0	2794268..2795590	+	440	148654047	-	PsycPRwf_2250	-	N-acetylglutamate synthase
2231	 41.90	-1	2795688..2796446	-	252	148654048	-	PsycPRwf_2251	-	peptidylprolyl isomerase, FKBP-type
2232	 42.65	0	2797078..2798655	+	525	148654049	-	PsycPRwf_2252	-	TM helix repeat-containing protein
2233	 44.54	0	2798844..2799521	+	225	148654050	-	PsycPRwf_2253	-	dehydrogenase
2234	 43.39	0	2799664..2800329	-	221	148654051	-	PsycPRwf_2254	-	phospholipid/glycerol acyltransferase
2235	 46.14	0	2800401..2802290	-	629	148654052	-	PsycPRwf_2255	-	DNA topoisomerase IV subunit B
2236	 43.70	0	2802432..2803058	-	208	148654053	-	PsycPRwf_2256	-	hypothetical protein
2237	 43.48	0	2803248..2803523	+	91	148654054	-	PsycPRwf_2257	-	hypothetical protein
2238	 43.24	0	2821323..2821958	-	211	148654055	-	PsycPRwf_2258	-	G:T/U mismatch-specific DNA glycosylase-like protein
2239	 43.82	0	2822266..2822904	+	212	148654056	upp	PsycPRwf_2259	-	uracil phosphoribosyltransferase
2240	 45.29	0	2823021..2823731	-	236	148654057	-	PsycPRwf_2260	-	hypothetical protein
2241	 45.68	0	2823731..2824216	-	161	148654058	-	PsycPRwf_2261	-	thioesterase superfamily protein
2242	 48.97	0	2824290..2825159	-	289	148654059	-	PsycPRwf_2262	-	uroporphyrinogen-III synthase-like protein
2243	 47.25	0	2825229..2826248	-	339	148654060	-	PsycPRwf_2263	-	porphobilinogen deaminase
2244	 46.88	0	2826493..2827968	+	491	148654061	-	PsycPRwf_2264	-	argininosuccinate lyase
2245	 42.00	-1	2827996..2828295	+	99	148654062	-	PsycPRwf_2265	-	hypothetical protein
2246	 46.53	0	2828380..2829129	-	249	148654063	-	PsycPRwf_2266	-	phosphate uptake regulator, PhoU
2247	 45.61	0	2829218..2830129	-	303	148654064	-	PsycPRwf_2267	-	phosphate ABC transporter, ATPase subunit
2248	 46.33	0	2830216..2831115	-	299	148654065	-	PsycPRwf_2268	-	phosphate ABC transporter, inner membrane subunit PstA
2249	 45.01	0	2831263..2832213	-	316	148654066	-	PsycPRwf_2269	-	phosphate ABC transporter, inner membrane subunit PstC
2250	 45.11	0	2832298..2833605	-	435	148654067	-	PsycPRwf_2270	-	phosphate ABC transporter, periplasmic phosphate-binding protein
2251	 42.42	-1	2833955..2834317	+	120	148654068	-	PsycPRwf_2271	-	rare lipoprotein A
2252	 48.63	0	2834837..2836837	+	666	148654069	-	PsycPRwf_2272	-	thiamine biosynthesis protein ThiC
2253	 41.75	-1	2836988..2837878	-	296	148654070	-	PsycPRwf_2273	-	fructose-1,6-bisphosphate aldolase
2254	 41.28	-1	2838169..2839275	-	368	148654071	-	PsycPRwf_2274	-	IS605 family transposase OrfB
2255	 42.97	0	2839576..2840094	+	172	148654072	-	PsycPRwf_2275	-	hypothetical protein
2256	 44.22	0	2840588..2841607	+	339	148654073	-	PsycPRwf_2276	-	hypothetical protein
2257	 47.52	0	2841686..2842714	+	342	148654074	-	PsycPRwf_2277	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2258	 48.34	0	2842783..2843295	+	170	148654075	-	PsycPRwf_2278	-	flavin reductase domain-containing protein
2259	 47.45	0	2843426..2844247	+	273	148654076	-	PsycPRwf_2279	-	hypothetical protein
2260	 46.59	0	2844425..2846272	-	615	148654077	-	PsycPRwf_2280	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
2261	 44.81	0	2846452..2847819	-	455	148654078	-	PsycPRwf_2281	-	UDP-N-acetylglucosamine pyrophosphorylase
2262	 46.63	0	2848149..2848772	-	207	148654079	-	PsycPRwf_2282	-	phosphatidylglycerophosphatase A
2263	 48.61	0	2848759..2849877	-	372	148654080	-	PsycPRwf_2283	-	thiamine-monophosphate kinase
2264	 46.25	0	2850081..2850839	-	252	148654081	-	PsycPRwf_2284	-	NusB antitermination factor
2265	 47.05	0	2850979..2851503	-	174	148654082	-	PsycPRwf_2285	-	riboflavin synthase
2266	 51.88	+1	2851735..2852505	-	256	148654083	-	PsycPRwf_2286	-	imidazole glycerol phosphate synthase subunit HisF
2267	 46.48	0	2852842..2854704	+	620	148654084	-	PsycPRwf_2287	-	Na+/Pi-cotransporter
2268	 45.89	0	2854850..2856091	+	413	148654085	-	PsycPRwf_2288	-	homoserine kinase
2269	 46.32	0	2856321..2856551	+	76	148654086	-	PsycPRwf_2289	-	hypothetical protein
2270	 47.32	0	2856611..2857525	+	304	148654087	-	PsycPRwf_2290	-	glutamine amidotransferase, class-II
2271	 51.39	+1	2857520..2858095	-	191	148654088	-	PsycPRwf_2291	-	SecC motif-containing protein
2272	 50.04	+1	2858343..2860574	+	743	148654089	-	PsycPRwf_2292	-	neutral/alkaline nonlysosomal ceramidase
2273	 43.75	0	2860761..2861144	-	127	148654090	-	PsycPRwf_2293	-	hypothetical protein
2274	 41.10	-1	2861418..2861726	-	102	148654091	-	PsycPRwf_2294	-	hypothetical protein
2275	 45.37	0	2861836..2862882	-	348	148654092	-	PsycPRwf_2295	-	DNA/RNA non-specific endonuclease
2276	 46.93	0	2863405..2864691	+	428	148654093	-	PsycPRwf_2296	-	iron-containing alcohol dehydrogenase
2277	 43.61	0	2864788..2865702	-	304	148654094	-	PsycPRwf_2297	-	LysR family transcriptional regulator
2278	 42.89	0	2865868..2866275	+	135	148654095	-	PsycPRwf_2298	-	DoxX family protein
2279	 42.86	0	2866819..2867364	+	181	148654096	-	PsycPRwf_2299	-	NADPH-dependent FMN reductase
2280	 42.45	-1	2867366..2868133	+	255	148654097	-	PsycPRwf_2300	-	hypothetical protein
2281	 41.33	-1	2868524..2869198	+	224	148654098	-	PsycPRwf_2301	-	isochorismatase hydrolase
2282	 39.76	-1	2869629..2869955	-	108	148654099	-	PsycPRwf_2302	-	acetyltransferase-like protein
2283	 46.08	0	2870361..2871074	+	237	148654100	-	PsycPRwf_2303	-	pirin domain-containing protein
2284	 44.59	0	2871242..2872174	+	310	148654101	-	PsycPRwf_2304	-	pirin domain-containing protein
2285	 43.63	0	2872444..2873055	+	203	148654102	-	PsycPRwf_2305	-	oxidoreductase related to nitroreductase-like protein
2286	 46.84	0	2873191..2874012	-	273	148654103	-	PsycPRwf_2306	-	short-chain dehydrogenase/reductase SDR
2287	 46.70	0	2873991..2875097	-	368	148654104	-	PsycPRwf_2307	-	hypothetical protein
2288	 47.48	0	2875243..2875956	-	237	148654105	-	PsycPRwf_2308	-	pseudouridine synthase
2289	 41.90	-1	2876261..2876587	+	108	148654106	-	PsycPRwf_2309	-	thioredoxin
2290	 45.88	0	2877323..2878621	+	432	148654107	rho	PsycPRwf_2310	-	transcription termination factor Rho
2291	 47.15	0	2878957..2879202	+	81	148654108	-	PsycPRwf_2311	-	17 kDa surface antigen
2292	 49.83	+1	2879388..2880266	-	292	148654109	-	PsycPRwf_2312	-	protein of unknown function, zinc metallopeptidase putative
2293	 49.35	+1	2880849..2881235	+	128	148654110	-	PsycPRwf_2313	-	hypothetical protein
2294	 40.19	-1	2881401..2881721	-	106	148654111	-	PsycPRwf_2314	-	histone family protein DNA-binding protein
2295	 48.22	0	2881826..2884237	-	803	148654112	-	PsycPRwf_2315	-	phenylalanyl-tRNA synthetase, beta subunit
2296	 49.02	0	2884346..2885473	-	375	148654113	-	PsycPRwf_2316	-	phenylalanyl-tRNA synthetase, alpha subunit
2297	 44.82	0	2885710..2886066	-	118	148654114	rplT	PsycPRwf_2317	-	50S ribosomal protein L20
2298	 42.93	0	2886149..2886346	-	65	148654115	rpmI	PsycPRwf_2318	-	50S ribosomal protein L35
2299	 48.92	0	2886828..2887757	+	309	148654116	-	PsycPRwf_2319	-	phosphoribosyl-AMP cyclohydrolase
2300	 44.31	0	2887879..2888133	+	84	148654117	-	PsycPRwf_2320	-	twin arginine-targeting protein translocase
2301	 48.37	0	2888170..2888934	+	254	148654118	-	PsycPRwf_2321	-	twin-arginine translocation protein, TatB subunit
2302	 44.00	0	2888931..2889764	+	277	148654119	-	PsycPRwf_2322	-	Sec-independent protein translocase, TatC subunit
2303	 48.62	0	2890139..2891656	+	505	148654120	-	PsycPRwf_2323	-	superfamily I DNA/RNA helicase-like protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.