IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2147	 46.57	0	2704098..2704301	+	67	148653964	-	PsycPRwf_2167	-	Heme exporter protein D (CcmD)
2148	 50.00	+1	2704427..2704954	+	175	148653965	-	PsycPRwf_2168	-	cytochrome c-type biogenesis protein CcmE
2149	 43.85	0	2705047..2706063	-	338	148653966	-	PsycPRwf_2169	-	integral membrane protein-like protein
2150	 43.81	0	2706327..2706536	-	69	148653967	-	PsycPRwf_2170	-	cold-shock DNA-binding domain-containing protein
2151	 42.70	0	2706989..2707447	+	152	148653968	-	PsycPRwf_2171	-	UspA domain-containing protein
2152	 52.14	+1	2707584..2708003	-	139	148653969	-	PsycPRwf_2172	-	hypothetical protein
2153	 50.05	+1	2708010..2709050	-	346	148653970	-	PsycPRwf_2173	-	ornithine cyclodeaminase/mu-crystallin
2154	 47.62	0	2709194..2710537	-	447	148653971	-	PsycPRwf_2174	-	branched-chain amino acid transport system II carrier protein
2155	 43.30	0	2710641..2710991	-	116	148653972	-	PsycPRwf_2175	-	hypothetical protein
2156	 43.73	0	2711042..2712493	-	483	148653973	-	PsycPRwf_2176	-	major facilitator transporter
2157	 45.01	0	2712885..2713355	-	156	148653974	-	PsycPRwf_2177	-	hypothetical protein
2158	 47.77	0	2713637..2716567	-	976	148653975	valS	PsycPRwf_2178	-	valyl-tRNA synthetase
2159	 44.72	0	2716752..2717243	-	163	148653976	-	PsycPRwf_2179	-	hypothetical protein
2160	 54.25	+2	2717305..2717739	-	144	148653977	-	PsycPRwf_2180	-	hypothetical protein
2161	 46.20	0	2717743..2718294	-	183	148653978	-	PsycPRwf_2181	-	hypothetical protein
2162	 40.96	-1	2718760..2719008	-	82	148653979	-	PsycPRwf_2182	-	hypothetical protein
2163	 44.72	0	2719210..2720649	-	479	148653980	-	PsycPRwf_2183	-	hypothetical protein
2164	 50.00	+1	2720749..2722056	+	435	148653981	-	PsycPRwf_2184	-	phosphoserine phosphatase SerB
2165	 42.79	0	2722504..2722947	+	147	148653982	-	PsycPRwf_2185	-	hypothetical protein
2166	 42.28	-1	2723224..2723793	+	189	148653983	-	PsycPRwf_2186	-	hypothetical protein
2167	 50.00	+1	2724059..2725162	+	367	148653984	-	PsycPRwf_2187	-	biotin synthase
2168	 46.44	0	2725197..2725631	+	144	148653985	-	PsycPRwf_2188	-	hypothetical protein
2169	 47.58	0	2725724..2726467	-	247	148653986	-	PsycPRwf_2189	-	hypothetical protein
2170	 45.81	0	2726519..2727007	-	162	148653987	-	PsycPRwf_2190	-	hypothetical protein
2171	 50.49	+1	2727043..2727759	-	238	148653988	-	PsycPRwf_2191	-	ribonuclease PH
2172	 45.61	0	2727998..2729764	-	588	148653989	-	PsycPRwf_2192	-	AMP-dependent synthetase and ligase
2173	 44.31	0	2730128..2731858	-	576	148653990	-	PsycPRwf_2193	-	AMP-dependent synthetase and ligase
2174	 48.67	0	2732430..2734718	+	762	148653991	-	PsycPRwf_2194	-	DNA topoisomerase IV subunit A
2175	 44.99	0	2734772..2735200	+	142	148653992	-	PsycPRwf_2195	-	hypothetical protein
2176	 47.75	0	2735313..2736512	+	399	148653993	-	PsycPRwf_2196	-	ErfK/YbiS/YcfS/YnhG family protein
2177	 46.12	0	2736664..2737281	-	205	148653994	-	PsycPRwf_2197	-	hemerythrin HHE cation binding domain-containing protein
2178	 45.79	0	2737599..2739203	-	534	148653995	-	PsycPRwf_2198	-	AbgT putative transporter
2179	 47.70	0	2739477..2740193	-	238	148653996	-	PsycPRwf_2199	-	hypothetical protein
2180	 45.99	0	2740265..2741599	-	444	148653997	-	PsycPRwf_2200	-	membrane protein-like protein
2181	 44.92	0	2741764..2742324	-	186	148653998	-	PsycPRwf_2201	-	membrane protein-like protein
2182	 37.82	-2	2742592..2742747	+	51	148653999	-	PsycPRwf_2202	-	hypothetical protein
2183	 47.37	0	2742999..2743988	+	329	148654000	-	PsycPRwf_2203	-	metallophosphoesterase
2184	 51.52	+1	2744098..2744658	+	186	148654001	-	PsycPRwf_2204	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
2185	 51.08	+1	2744833..2746032	+	399	148654002	-	PsycPRwf_2205	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
2186	 45.58	0	2746029..2746526	+	165	148654003	-	PsycPRwf_2206	-	hypothetical protein
2187	 49.85	+1	2746618..2747610	-	330	148654004	-	PsycPRwf_2207	-	tRNA synthetase, class II (D, K and N)
2188	 46.40	0	2747659..2748783	-	374	148654005	-	PsycPRwf_2208	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2189	 46.02	0	2748924..2750153	-	409	148654006	-	PsycPRwf_2209	-	hypothetical protein
2190	 47.95	0	2750360..2752453	-	697	148654007	glyS	PsycPRwf_2210	-	glycyl-tRNA synthetase subunit beta
2191	 47.90	0	2752511..2753464	-	317	148654008	glyQ	PsycPRwf_2211	-	glycyl-tRNA synthetase subunit alpha
2192	 41.20	-1	2753787..2754002	-	71	148654009	-	PsycPRwf_2212	-	phage shock protein C, PspC
2193	 46.11	0	2754502..2755542	+	346	148654010	-	PsycPRwf_2213	-	nicotinamide-nucleotide adenylyltransferase
2194	 45.43	0	2755635..2756378	+	247	148654011	-	PsycPRwf_2214	-	nicotinamide mononucleotide transporter PnuC
2195	 47.15	0	2756467..2757378	-	303	148654012	-	PsycPRwf_2215	-	peptidase M48, Ste24p
2196	 44.22	0	2757647..2758096	+	149	148654013	-	PsycPRwf_2216	-	hypothetical protein
2197	 40.67	-1	2758365..2758964	+	199	148654014	-	PsycPRwf_2217	-	YceI family protein
2198	 46.10	0	2759133..2760338	+	401	148654015	-	PsycPRwf_2218	-	low temperature requirement A
2199	 45.42	0	2760433..2760672	-	79	148654016	-	PsycPRwf_2219	-	hypothetical protein
2200	 44.78	0	2760665..2761258	-	197	148654017	-	PsycPRwf_2220	-	GCN5-related N-acetyltransferase
2201	 44.98	0	2761363..2762607	-	414	148654018	-	PsycPRwf_2221	-	tyrosyl-tRNA synthetase
2202	 44.77	0	2763126..2763632	+	168	148654019	-	PsycPRwf_2222	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
2203	 45.66	0	2763724..2765070	+	448	148654020	-	PsycPRwf_2223	-	acetyl-CoA carboxylase, biotin carboxylase
2204	 47.70	0	2765108..2765803	+	231	148654021	-	PsycPRwf_2224	-	allophanate hydrolase subunit 1
2205	 48.33	0	2765825..2766784	+	319	148654022	-	PsycPRwf_2225	-	urea amidolyase related protein
2206	 46.01	0	2766774..2767538	+	254	148654023	-	PsycPRwf_2226	-	hypothetical protein
2207	 45.49	0	2767625..2768809	+	394	148654024	-	PsycPRwf_2227	-	branched-chain amino acid transport system II carrier protein
2208	 45.22	0	2768891..2769361	+	156	148654025	-	PsycPRwf_2228	-	biotin/lipoyl attachment domain-containing protein
2209	 40.56	-1	2769375..2770481	-	368	148654026	-	PsycPRwf_2229	-	IS605 family transposase OrfB
2210	 51.79	+1	2770688..2772085	+	465	148654027	anmK	PsycPRwf_2230	-	anhydro-N-acetylmuramic acid kinase
2211	 49.09	0	2772103..2772540	-	145	148654028	-	PsycPRwf_2231	-	thioredoxin
2212	 49.61	+1	2772835..2774628	+	597	148654029	-	PsycPRwf_2232	-	sulphate transporter
2213	 48.62	0	2774740..2775066	+	108	148654030	-	PsycPRwf_2233	-	hypothetical protein
2214	 45.65	0	2775159..2775491	+	110	148654031	-	PsycPRwf_2234	-	hypothetical protein
2215	 44.59	0	2775634..2777214	-	526	148654032	-	PsycPRwf_2235	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2216	 35.09	-2	2777661..2777888	+	75	148654033	-	PsycPRwf_2236	-	hypothetical protein
2217	 46.04	0	2778598..2780910	+	770	148654034	-	PsycPRwf_2237	-	ribonuclease R
2218	 44.31	0	2781049..2781804	-	251	148654035	-	PsycPRwf_2238	-	endonuclease/exonuclease/phosphatase
2219	 45.82	0	2782112..2783224	-	370	148654036	-	PsycPRwf_2239	-	hypothetical protein
2220	 47.27	0	2783776..2785914	+	712	148654037	-	PsycPRwf_2240	-	oligopeptidase A
2221	 50.41	+1	2785916..2786161	+	81	148654038	-	PsycPRwf_2241	-	hypothetical protein
2222	 47.65	0	2786343..2788004	-	553	148654039	-	PsycPRwf_2242	-	putative ABC transporter ATP-binding protein
2223	 45.74	0	2788448..2788729	+	93	148654040	-	PsycPRwf_2243	-	acetyltransferase-like protein
2224	 43.20	0	2788885..2789178	+	97	148654041	-	PsycPRwf_2244	-	transcriptional coactivator/pterin dehydratase
2225	 44.68	0	2789300..2790013	+	237	148654042	-	PsycPRwf_2245	-	hypothetical protein
2226	 48.54	0	2790010..2791206	-	398	148654043	-	PsycPRwf_2246	-	hypothetical protein
2227	 47.92	0	2791390..2792280	+	296	148654044	-	PsycPRwf_2247	-	CBS domain-containing protein
2228	 49.86	+1	2792270..2793310	+	346	148654045	-	PsycPRwf_2248	-	patatin
2229	 46.42	0	2793397..2793969	-	190	148654046	-	PsycPRwf_2249	-	hypothetical protein
2230	 47.85	0	2794268..2795590	+	440	148654047	-	PsycPRwf_2250	-	N-acetylglutamate synthase
2231	 41.90	-1	2795688..2796446	-	252	148654048	-	PsycPRwf_2251	-	peptidylprolyl isomerase, FKBP-type
2232	 42.65	0	2797078..2798655	+	525	148654049	-	PsycPRwf_2252	-	TM helix repeat-containing protein
2233	 44.54	0	2798844..2799521	+	225	148654050	-	PsycPRwf_2253	-	dehydrogenase
2234	 43.39	0	2799664..2800329	-	221	148654051	-	PsycPRwf_2254	-	phospholipid/glycerol acyltransferase
2235	 46.14	0	2800401..2802290	-	629	148654052	-	PsycPRwf_2255	-	DNA topoisomerase IV subunit B
2236	 43.70	0	2802432..2803058	-	208	148654053	-	PsycPRwf_2256	-	hypothetical protein
2237	 43.48	0	2803248..2803523	+	91	148654054	-	PsycPRwf_2257	-	hypothetical protein
2238	 43.24	0	2821323..2821958	-	211	148654055	-	PsycPRwf_2258	-	G:T/U mismatch-specific DNA glycosylase-like protein
2239	 43.82	0	2822266..2822904	+	212	148654056	upp	PsycPRwf_2259	-	uracil phosphoribosyltransferase
2240	 45.29	0	2823021..2823731	-	236	148654057	-	PsycPRwf_2260	-	hypothetical protein
2241	 45.68	0	2823731..2824216	-	161	148654058	-	PsycPRwf_2261	-	thioesterase superfamily protein
2242	 48.97	0	2824290..2825159	-	289	148654059	-	PsycPRwf_2262	-	uroporphyrinogen-III synthase-like protein
2243	 47.25	0	2825229..2826248	-	339	148654060	-	PsycPRwf_2263	-	porphobilinogen deaminase
2244	 46.88	0	2826493..2827968	+	491	148654061	-	PsycPRwf_2264	-	argininosuccinate lyase
2245	 42.00	-1	2827996..2828295	+	99	148654062	-	PsycPRwf_2265	-	hypothetical protein
2246	 46.53	0	2828380..2829129	-	249	148654063	-	PsycPRwf_2266	-	phosphate uptake regulator, PhoU
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.