IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2022	 41.56	-1	2545516..2545989	-	157	148653839	secE	PsycPRwf_2042	-	preprotein translocase subunit SecE
2023	 46.60	0	2546482..2547672	-	396	148653840	-	PsycPRwf_2043	-	elongation factor Tu
2024	 45.40	0	2548606..2549823	-	405	148653841	-	PsycPRwf_2044	-	FHA domain-containing protein
2025	 45.70	0	2549960..2550784	-	274	148653842	-	PsycPRwf_2045	-	hypothetical protein
2026	 47.99	0	2551109..2552704	-	531	148653843	prfC	PsycPRwf_2046	-	peptide chain release factor 3
2027	 45.01	0	2553014..2553424	+	136	148653844	-	PsycPRwf_2047	-	OsmC family protein
2028	 46.30	0	2553739..2556807	+	1022	148653845	-	PsycPRwf_2048	-	DNA polymerase I
2029	 28.99	-2	2556978..2557529	+	183	148653846	-	PsycPRwf_2049	-	hypothetical protein
2030	 45.75	0	2557587..2558786	-	399	148653847	-	PsycPRwf_2050	-	transposase, mutator type
2031	 43.32	0	2559130..2560281	+	383	148653848	-	PsycPRwf_2051	-	hypothetical protein
2032	 48.86	0	2560301..2561569	-	422	148653849	-	PsycPRwf_2052	-	hypothetical protein
2033	 45.58	0	2561609..2562841	-	410	148653850	-	PsycPRwf_2053	-	alkane 1-monooxygenase
2034	 42.74	0	2563366..2563737	+	123	148653851	-	PsycPRwf_2054	-	hypothetical protein
2035	 41.99	-1	2564109..2564651	+	180	148653852	-	PsycPRwf_2055	-	Ferritin, Dps family protein
2036	 43.38	0	2564733..2564951	+	72	148653853	-	PsycPRwf_2056	-	hypothetical protein
2037	 47.06	0	2565054..2566073	-	339	148653854	-	PsycPRwf_2057	-	ferrochelatase
2038	 48.15	0	2566442..2567710	+	422	148653855	metX	PsycPRwf_2058	-	homoserine O-acetyltransferase
2039	 45.09	0	2567707..2568327	+	206	148653856	-	PsycPRwf_2059	-	methionine biosynthesis protein MetW
2040	 46.74	0	2568779..2569360	+	193	148653857	-	PsycPRwf_2060	-	Sel1 domain-containing protein
2041	 49.96	+1	2569612..2571000	-	462	148653858	-	PsycPRwf_2061	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2042	 47.98	0	2571175..2572362	-	395	148653859	-	PsycPRwf_2062	-	acyl-CoA dehydrogenase domain-containing protein
2043	 48.74	0	2572413..2573327	-	304	148653860	-	PsycPRwf_2063	-	pyruvate carboxyltransferase
2044	 50.83	+1	2573398..2575500	-	700	148653861	-	PsycPRwf_2064	-	carbamoyl-phosphate synthase L chain, ATP-binding
2045	 43.82	0	2575625..2576053	-	142	148653862	-	PsycPRwf_2065	-	glutathione-dependent formaldehyde-activating, GFA
2046	 47.32	0	2576110..2576931	-	273	148653863	-	PsycPRwf_2066	-	enoyl-CoA hydratase/isomerase
2047	 48.42	0	2577189..2578799	-	536	148653864	-	PsycPRwf_2067	-	propionyl-CoA carboxylase
2048	 47.12	0	2578914..2580704	-	596	148653865	-	PsycPRwf_2068	-	acyl-CoA synthetase
2049	 47.63	0	2581218..2582147	+	309	148653866	-	PsycPRwf_2069	-	Hsp33 protein
2050	 47.72	0	2582289..2583776	-	495	148653867	-	PsycPRwf_2070	-	PGAP1 family protein
2051	 46.35	0	2583933..2585999	-	688	148653868	-	PsycPRwf_2071	-	phosphatase-like protein
2052	 44.90	0	2586232..2586957	-	241	148653869	-	PsycPRwf_2072	-	polar amino acid ABC transporter, inner membrane subunit
2053	 47.91	0	2586967..2587707	-	246	148653870	-	PsycPRwf_2073	-	polar amino acid ABC transporter, inner membrane subunit
2054	 44.36	0	2588062..2588895	-	277	148653871	-	PsycPRwf_2074	-	extracellular solute-binding protein
2055	 46.50	0	2589087..2589929	-	280	148653872	-	PsycPRwf_2075	-	extracellular solute-binding protein
2056	 45.79	0	2590039..2590833	-	264	148653873	-	PsycPRwf_2076	-	extracellular solute-binding protein
2057	 49.28	0	2591302..2592129	-	275	148653874	-	PsycPRwf_2077	-	ABC transporter related
2058	 40.15	-1	2592251..2592382	-	43	148653875	-	PsycPRwf_2078	-	hypothetical protein
2059	 48.27	0	2592478..2593776	+	432	148653876	proA	PsycPRwf_2079	-	gamma-glutamyl phosphate reductase
2060	 47.22	0	2594530..2595804	+	424	148653877	-	PsycPRwf_2080	-	sodium/glutamate symporter
2061	 44.80	0	2595877..2597673	-	598	148653878	-	PsycPRwf_2081	-	oligoendopeptidase F
2062	 40.56	-1	2597861..2598109	+	82	148653879	-	PsycPRwf_2082	-	hypothetical protein
2063	 47.41	0	2598302..2599558	-	418	148653880	-	PsycPRwf_2083	-	serine hydroxymethyltransferase
2064	 46.67	0	2599813..2600322	-	169	148653881	-	PsycPRwf_2084	-	chorismate lyase
2065	 46.46	0	2600357..2601697	-	446	148653882	-	PsycPRwf_2085	-	hypothetical protein
2066	 45.41	0	2602323..2604542	+	739	148653883	-	PsycPRwf_2086	-	isocitrate dehydrogenase, NADP-dependent
2067	 48.49	0	2604875..2607097	+	740	148653884	-	PsycPRwf_2087	-	isocitrate dehydrogenase, NADP-dependent
2068	 44.13	0	2607213..2607740	+	175	148653885	-	PsycPRwf_2088	-	Ion transport 2 domain-containing protein
2069	 49.51	+1	2607796..2608407	+	203	148653886	-	PsycPRwf_2089	-	pseudouridine synthase
2070	 47.26	0	2608469..2610364	-	631	148653887	-	PsycPRwf_2090	-	peptidase M61 domain-containing protein
2071	 45.34	0	2610797..2611279	+	160	148653888	-	PsycPRwf_2091	-	peptidylprolyl isomerase, FKBP-type
2072	 46.70	0	2611426..2613093	-	555	148653889	-	PsycPRwf_2092	-	histidine kinase
2073	 48.72	0	2613280..2613981	-	233	148653890	-	PsycPRwf_2093	-	two component transcriptional regulator
2074	 47.39	0	2614224..2614664	-	146	148653891	-	PsycPRwf_2094	-	D-tyrosyl-tRNA deacylase
2075	 49.12	0	2614877..2615788	+	303	148653892	-	PsycPRwf_2095	-	phosphatidylserine decarboxylase
2076	 46.76	0	2615867..2616484	-	205	148653893	-	PsycPRwf_2096	-	metal dependent phosphohydrolase
2077	 45.08	0	2616651..2617229	-	192	148653894	-	PsycPRwf_2097	-	isochorismatase hydrolase
2078	 45.61	0	2617379..2617777	-	132	148653895	-	PsycPRwf_2098	-	hypothetical protein
2079	 48.51	0	2617934..2619106	-	390	148653896	fadA	PsycPRwf_2099	-	3-ketoacyl-CoA thiolase
2080	 46.94	0	2619268..2621427	-	719	148653897	fadB	PsycPRwf_2100	-	multifunctional fatty acid oxidation complex subunit alpha
2081	 49.47	+1	2621901..2622836	+	311	148653898	-	PsycPRwf_2101	-	polyprenyl synthetase
2082	 46.32	0	2622981..2625167	+	728	148653899	-	PsycPRwf_2102	-	tetratricopeptide TPR_4
2083	 52.14	+1	2625415..2626137	+	240	148653900	-	PsycPRwf_2103	-	outer membrane lipoprotein LolB
2084	 49.69	+1	2626207..2627178	+	323	148653901	-	PsycPRwf_2104	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
2085	 47.34	0	2627784..2628740	+	318	148653902	-	PsycPRwf_2105	-	ribose-phosphate pyrophosphokinase
2086	 45.19	0	2628967..2629641	+	224	148653903	-	PsycPRwf_2106	-	50S ribosomal protein L25/general stress protein Ctc
2087	 44.55	0	2629686..2630309	+	207	148653904	-	PsycPRwf_2107	-	peptidyl-tRNA hydrolase
2088	 43.04	0	2630498..2630878	+	126	148653905	-	PsycPRwf_2108	-	aspartate alpha-decarboxylase
2089	 47.37	0	2630987..2631955	+	322	148653906	-	PsycPRwf_2109	-	CaCA family Na(+)/Ca(+) antiporter
2090	 49.17	0	2632070..2634247	-	725	148653907	-	PsycPRwf_2110	-	NADH:flavin oxidoreductase/NADH oxidase
2091	 48.31	0	2634649..2636331	+	560	148653908	-	PsycPRwf_2111	-	AMP-dependent synthetase and ligase
2092	 48.74	0	2636417..2637565	-	382	148653909	-	PsycPRwf_2112	-	Serine-pyruvate aminotransferase/ aspartate aminotransferase-like protein
2093	 38.61	-2	2637769..2638242	-	157	148653910	-	PsycPRwf_2113	-	bacterioferritin
2094	 43.33	0	2638309..2638788	-	159	148653911	-	PsycPRwf_2114	-	bacterioferritin
2095	 44.76	0	2639097..2639306	-	69	148653912	-	PsycPRwf_2115	-	BFD/(2Fe-2S)-binding domain-containing protein
2096	 43.30	0	2639605..2640246	-	213	148653913	-	PsycPRwf_2116	-	DSBA oxidoreductase
2097	 48.92	0	2640723..2641511	+	262	148653914	-	PsycPRwf_2117	-	3-demethylubiquinone-9 3-methyltransferase
2098	 47.88	0	2641593..2642300	+	235	148653915	-	PsycPRwf_2118	-	HAD family hydrolase
2099	 49.16	0	2642392..2643168	+	258	148653916	-	PsycPRwf_2119	-	short chain dehydrogenase
2100	 53.56	+2	2643391..2643657	+	88	148653917	-	PsycPRwf_2120	-	hypothetical protein
2101	 49.53	+1	2643843..2644589	-	248	148653918	ompR	PsycPRwf_2121	-	osmolarity response regulator
2102	 48.51	0	2645245..2647794	+	849	148653919	-	PsycPRwf_2122	-	RNA-binding S1 domain-containing protein
2103	 46.75	0	2648208..2649467	-	419	148653920	-	PsycPRwf_2123	-	saccharopine dehydrogenase (NAD(+), L-glutamate-forming)
2104	 46.20	0	2649884..2650792	+	302	148653921	-	PsycPRwf_2124	-	dihydrodipicolinate synthase
2105	 45.90	0	2650968..2651333	+	121	148653922	-	PsycPRwf_2125	-	hypothetical protein
2106	 43.33	0	2651472..2652191	+	239	148653923	-	PsycPRwf_2126	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2107	 45.83	0	2652331..2652642	+	103	148653924	-	PsycPRwf_2127	-	hypothetical protein
2108	 42.94	0	2652657..2653166	-	169	148653925	-	PsycPRwf_2128	-	hypothetical protein
2109	 45.57	0	2653336..2654283	-	315	148653926	-	PsycPRwf_2129	-	hypothetical protein
2110	 44.60	0	2654350..2655210	-	286	148653927	-	PsycPRwf_2130	-	pantoate--beta-alanine ligase
2111	 45.76	0	2655230..2656042	-	270	148653928	-	PsycPRwf_2131	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2112	 49.62	+1	2656117..2656644	-	175	148653929	-	PsycPRwf_2132	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2113	 46.76	0	2656681..2658840	-	719	148653930	-	PsycPRwf_2133	-	poly(A) polymerase
2114	 44.56	0	2658987..2659583	-	198	148653931	-	PsycPRwf_2134	-	rhomboid family protein
2115	 42.16	-1	2659637..2660644	-	335	148653932	-	PsycPRwf_2135	-	5'-nucleotidase
2116	 45.17	0	2666956..2668890	+	644	148653933	thrS	PsycPRwf_2136	-	threonyl-tRNA synthetase
2117	 44.25	0	2668914..2669417	+	167	148653934	-	PsycPRwf_2137	-	translation initiation factor IF-3
2118	 41.87	-1	2669725..2670978	+	417	148653935	-	PsycPRwf_2138	-	toxic anion resistance family protein
2119	 45.68	0	2671098..2671664	-	188	148653936	-	PsycPRwf_2139	-	peroxiredoxin
2120	 44.96	0	2672192..2673103	+	303	148653937	-	PsycPRwf_2140	-	LysR family transcriptional regulator
2121	 48.58	0	2673173..2673874	-	233	148653938	-	PsycPRwf_2141	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.