IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1958	 49.32	+1	2463286..2464680	-	464	148653775	-	PsycPRwf_1978	-	Na+/H+ antiporter NhaC
1959	 48.88	0	2465179..2467758	+	859	148653776	-	PsycPRwf_1979	-	ATP-dependent protease La
1960	 48.91	0	2468004..2468555	+	183	148653777	-	PsycPRwf_1980	-	superoxide dismutase, copper/zinc binding
1961	 46.76	0	2469061..2470110	+	349	148653778	recA	PsycPRwf_1981	-	recombinase A
1962	 47.17	0	2470257..2471492	+	411	148653779	-	PsycPRwf_1982	-	hypothetical protein
1963	 46.50	0	2471533..2472132	-	199	148653780	-	PsycPRwf_1983	-	GCN5-related N-acetyltransferase
1964	 49.32	+1	2472266..2473435	+	389	148653781	-	PsycPRwf_1984	-	tRNA pseudouridine synthase D, TruD
1965	 49.35	+1	2473459..2474388	-	309	148653782	-	PsycPRwf_1985	-	phosphotransferase domain-containing protein
1966	 43.33	0	2474626..2475195	+	189	148653783	-	PsycPRwf_1986	-	intracellular septation protein A
1967	 50.83	+1	2475220..2475522	+	100	148653784	-	PsycPRwf_1987	-	YciI-like protein
1968	 52.73	+2	2475559..2476125	+	188	148653785	-	PsycPRwf_1988	-	hypothetical protein
1969	 48.65	0	2476196..2478415	+	739	148653786	-	PsycPRwf_1989	-	hypothetical protein
1970	 49.57	+1	2478455..2479261	-	268	148653787	-	PsycPRwf_1990	-	UBA/THIF-type NAD/FAD binding protein
1971	 45.79	0	2479369..2480259	-	296	148653788	-	PsycPRwf_1991	-	TatD-related deoxyribonuclease
1972	 51.23	+1	2480585..2481277	-	230	148653789	-	PsycPRwf_1992	-	single-strand binding protein
1973	 47.91	0	2481374..2482738	-	454	148653790	-	PsycPRwf_1993	-	major facilitator transporter
1974	 42.25	-1	2482749..2483006	-	85	148653791	-	PsycPRwf_1994	-	hypothetical protein
1975	 49.68	+1	2483273..2486251	+	992	148653792	-	PsycPRwf_1995	-	excinuclease ABC, A subunit
1976	 31.39	-2	2486375..2488126	+	583	148653793	-	PsycPRwf_1996	-	hypothetical protein
1977	 50.54	+1	2488190..2489293	+	367	148653794	-	PsycPRwf_1997	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1978	 51.06	+1	2489349..2489630	-	93	148653795	-	PsycPRwf_1998	-	hypothetical protein
1979	 50.24	+1	2489857..2490915	+	352	148653796	-	PsycPRwf_1999	-	alpha/beta hydrolase domain-containing protein
1980	 45.34	0	2491081..2491713	+	210	148653797	-	PsycPRwf_2000	-	nitroreductase
1981	 48.92	0	2491959..2492933	+	324	148653798	-	PsycPRwf_2001	-	hypothetical protein
1982	 47.78	0	2493172..2493960	+	262	148653799	-	PsycPRwf_2002	-	hypothetical protein
1983	 43.93	0	2493962..2494414	+	150	148653800	-	PsycPRwf_2003	-	hypothetical protein
1984	 45.21	0	2494634..2495989	+	451	148653801	-	PsycPRwf_2004	-	glutathione reductase
1985	 43.61	0	2496116..2496592	-	158	148653802	smpB	PsycPRwf_2005	-	SsrA-binding protein
1986	 43.92	0	2497022..2497531	+	169	148653803	-	PsycPRwf_2006	-	pantetheine-phosphate adenylyltransferase
1987	 42.06	-1	2497636..2497887	+	83	148653804	-	PsycPRwf_2007	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1988	 48.57	0	2498235..2500688	+	817	148653805	-	PsycPRwf_2008	-	hypothetical protein
1989	 49.76	+1	2500877..2501710	+	277	148653806	-	PsycPRwf_2009	-	protein-disulfide isomerase-like protein
1990	 46.34	0	2502025..2503362	+	445	148653807	-	PsycPRwf_2010	-	homoserine dehydrogenase
1991	 50.08	+1	2503482..2504663	+	393	148653808	-	PsycPRwf_2011	-	acetyl-CoA acetyltransferase
1992	 43.70	0	2505142..2505990	+	282	148653809	-	PsycPRwf_2012	-	PRC-barrel domain-containing protein
1993	 43.73	0	2506224..2506925	+	233	148653810	-	PsycPRwf_2013	-	hypothetical protein
1994	 41.37	-1	2506960..2508066	-	368	148653811	-	PsycPRwf_2014	-	IS605 family transposase OrfB
1995	 52.46	+1	2508304..2508648	-	114	148653812	-	PsycPRwf_2015	-	hypothetical protein
1996	 46.44	0	2508715..2511492	-	925	148653813	-	PsycPRwf_2016	-	preprotein translocase subunit SecA
1997	 48.54	0	2511886..2514930	+	1014	148653814	-	PsycPRwf_2017	-	DNA mismatch repair protein
1998	 45.99	0	2515141..2515464	+	107	148653815	-	PsycPRwf_2018	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1999	 41.73	-1	2515587..2515979	-	130	148653816	-	PsycPRwf_2019	-	Tfp pilus assembly protein PilE-like protein
2000	 47.12	0	2516124..2516696	-	190	148653817	-	PsycPRwf_2020	-	hypothetical protein
2001	 46.09	0	2516689..2517582	-	297	148653818	-	PsycPRwf_2021	-	hypothetical protein
2002	 47.73	0	2517579..2518592	-	337	148653819	-	PsycPRwf_2022	-	hypothetical protein
2003	 47.88	0	2518596..2519138	-	180	148653820	-	PsycPRwf_2023	-	hypothetical protein
2004	 47.51	0	2519173..2519694	-	173	148653821	-	PsycPRwf_2024	-	hypothetical protein
2005	 48.12	0	2519876..2520592	-	238	148653822	-	PsycPRwf_2025	-	amidophosphoribosyltransferase-like protein
2006	 45.16	0	2520630..2521931	-	433	148653823	-	PsycPRwf_2026	-	phospholipase A(1)
2007	 44.51	0	2522084..2522575	-	163	148653824	-	PsycPRwf_2027	-	hypothetical protein
2008	 49.57	+1	2522900..2525203	-	767	148653825	-	PsycPRwf_2028	-	cytochrome c biogenesis protein, transmembrane region
2009	 43.48	0	2525435..2526469	-	344	148653826	-	PsycPRwf_2029	-	hypothetical protein
2010	 47.15	0	2527241..2528869	-	542	148653827	-	PsycPRwf_2030	-	hypothetical protein
2011	 49.10	0	2528856..2530301	-	481	148653828	-	PsycPRwf_2031	-	GTPase subunit of restriction endonuclease-like protein
2012	 44.30	0	2530521..2531213	+	230	148653829	-	PsycPRwf_2032	-	hypothetical protein
2013	 48.04	0	2531260..2531769	-	169	148653830	-	PsycPRwf_2033	-	hypothetical protein
2014	 40.56	-1	2531857..2532576	-	239	148653831	-	PsycPRwf_2034	-	hypothetical protein
2015	 46.01	0	2532975..2537195	-	1406	148653832	-	PsycPRwf_2035	-	DNA-directed RNA polymerase subunit beta'
2016	 44.67	0	2537364..2541482	-	1372	148653833	rpoB	PsycPRwf_2036	-	DNA-directed RNA polymerase subunit beta
2017	 45.50	0	2542098..2542475	-	125	148653834	rplL	PsycPRwf_2037	-	50S ribosomal protein L7/L12
2018	 42.61	0	2542614..2543141	-	175	148653835	rplJ	PsycPRwf_2038	-	50S ribosomal protein L10
2019	 45.73	0	2543565..2544266	-	233	148653836	rplA	PsycPRwf_2039	-	50S ribosomal protein L1
2020	 45.37	0	2544267..2544698	-	143	148653837	rplK	PsycPRwf_2040	-	50S ribosomal protein L11
2021	 40.49	-1	2544819..2545349	-	176	148653838	-	PsycPRwf_2041	-	NusG antitermination factor
2022	 41.56	-1	2545516..2545989	-	157	148653839	secE	PsycPRwf_2042	-	preprotein translocase subunit SecE
2023	 46.60	0	2546482..2547672	-	396	148653840	-	PsycPRwf_2043	-	elongation factor Tu
2024	 45.40	0	2548606..2549823	-	405	148653841	-	PsycPRwf_2044	-	FHA domain-containing protein
2025	 45.70	0	2549960..2550784	-	274	148653842	-	PsycPRwf_2045	-	hypothetical protein
2026	 47.99	0	2551109..2552704	-	531	148653843	prfC	PsycPRwf_2046	-	peptide chain release factor 3
2027	 45.01	0	2553014..2553424	+	136	148653844	-	PsycPRwf_2047	-	OsmC family protein
2028	 46.30	0	2553739..2556807	+	1022	148653845	-	PsycPRwf_2048	-	DNA polymerase I
2029	 28.99	-2	2556978..2557529	+	183	148653846	-	PsycPRwf_2049	-	hypothetical protein
2030	 45.75	0	2557587..2558786	-	399	148653847	-	PsycPRwf_2050	-	transposase, mutator type
2031	 43.32	0	2559130..2560281	+	383	148653848	-	PsycPRwf_2051	-	hypothetical protein
2032	 48.86	0	2560301..2561569	-	422	148653849	-	PsycPRwf_2052	-	hypothetical protein
2033	 45.58	0	2561609..2562841	-	410	148653850	-	PsycPRwf_2053	-	alkane 1-monooxygenase
2034	 42.74	0	2563366..2563737	+	123	148653851	-	PsycPRwf_2054	-	hypothetical protein
2035	 41.99	-1	2564109..2564651	+	180	148653852	-	PsycPRwf_2055	-	Ferritin, Dps family protein
2036	 43.38	0	2564733..2564951	+	72	148653853	-	PsycPRwf_2056	-	hypothetical protein
2037	 47.06	0	2565054..2566073	-	339	148653854	-	PsycPRwf_2057	-	ferrochelatase
2038	 48.15	0	2566442..2567710	+	422	148653855	metX	PsycPRwf_2058	-	homoserine O-acetyltransferase
2039	 45.09	0	2567707..2568327	+	206	148653856	-	PsycPRwf_2059	-	methionine biosynthesis protein MetW
2040	 46.74	0	2568779..2569360	+	193	148653857	-	PsycPRwf_2060	-	Sel1 domain-containing protein
2041	 49.96	+1	2569612..2571000	-	462	148653858	-	PsycPRwf_2061	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2042	 47.98	0	2571175..2572362	-	395	148653859	-	PsycPRwf_2062	-	acyl-CoA dehydrogenase domain-containing protein
2043	 48.74	0	2572413..2573327	-	304	148653860	-	PsycPRwf_2063	-	pyruvate carboxyltransferase
2044	 50.83	+1	2573398..2575500	-	700	148653861	-	PsycPRwf_2064	-	carbamoyl-phosphate synthase L chain, ATP-binding
2045	 43.82	0	2575625..2576053	-	142	148653862	-	PsycPRwf_2065	-	glutathione-dependent formaldehyde-activating, GFA
2046	 47.32	0	2576110..2576931	-	273	148653863	-	PsycPRwf_2066	-	enoyl-CoA hydratase/isomerase
2047	 48.42	0	2577189..2578799	-	536	148653864	-	PsycPRwf_2067	-	propionyl-CoA carboxylase
2048	 47.12	0	2578914..2580704	-	596	148653865	-	PsycPRwf_2068	-	acyl-CoA synthetase
2049	 47.63	0	2581218..2582147	+	309	148653866	-	PsycPRwf_2069	-	Hsp33 protein
2050	 47.72	0	2582289..2583776	-	495	148653867	-	PsycPRwf_2070	-	PGAP1 family protein
2051	 46.35	0	2583933..2585999	-	688	148653868	-	PsycPRwf_2071	-	phosphatase-like protein
2052	 44.90	0	2586232..2586957	-	241	148653869	-	PsycPRwf_2072	-	polar amino acid ABC transporter, inner membrane subunit
2053	 47.91	0	2586967..2587707	-	246	148653870	-	PsycPRwf_2073	-	polar amino acid ABC transporter, inner membrane subunit
2054	 44.36	0	2588062..2588895	-	277	148653871	-	PsycPRwf_2074	-	extracellular solute-binding protein
2055	 46.50	0	2589087..2589929	-	280	148653872	-	PsycPRwf_2075	-	extracellular solute-binding protein
2056	 45.79	0	2590039..2590833	-	264	148653873	-	PsycPRwf_2076	-	extracellular solute-binding protein
2057	 49.28	0	2591302..2592129	-	275	148653874	-	PsycPRwf_2077	-	ABC transporter related
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.