IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.93   STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
150	 48.99	0	178666..179898	-	410	148651967	-	PsycPRwf_0150	-	type II secretion system protein
151	 49.64	+1	179959..181221	-	420	148651968	-	PsycPRwf_0151	-	type II secretion system protein E
152	 48.62	0	181557..182354	+	265	148651969	-	PsycPRwf_0152	-	Triose-phosphate isomerase
153	 49.69	+1	182520..182837	+	105	148651970	secG	PsycPRwf_0153	-	preprotein translocase subunit SecG
154	 45.11	0	183800..184300	+	166	148651971	-	PsycPRwf_0155	-	hypothetical protein
155	 43.88	0	184592..186079	+	495	148651972	nusA	PsycPRwf_0156	-	transcription elongation factor NusA
156	 47.50	0	186097..188814	+	905	148651973	infB	PsycPRwf_0157	-	translation initiation factor IF-2
157	 45.86	0	189011..189433	+	140	148651974	-	PsycPRwf_0158	-	ribosome-binding factor A
158	 47.73	0	189456..190490	+	344	148651975	-	PsycPRwf_0159	-	tRNA pseudouridine synthase B
159	 42.61	0	191213..191740	+	175	148651976	-	PsycPRwf_0160	-	ThiJ/PfpI domain-containing protein
160	 42.22	-1	191834..192013	+	59	148651977	-	PsycPRwf_0161	-	hypothetical protein
161	 50.62	+1	192085..192246	+	53	148651978	-	PsycPRwf_0162	-	hypothetical protein
162	 42.70	0	192402..192668	+	88	148651979	rpsO	PsycPRwf_0163	-	30S ribosomal protein S15
163	 46.24	0	193089..195203	+	704	148651980	-	PsycPRwf_0164	-	polynucleotide phosphorylase/polyadenylase
164	 45.64	0	196042..198876	-	944	148651981	-	PsycPRwf_0165	-	glycerol-3-phosphate acyltransferase
165	 47.99	0	199482..200375	+	297	148651982	-	PsycPRwf_0166	-	palmitoyl-CoA hydrolase
166	 50.82	+1	200529..201866	-	445	148651983	-	PsycPRwf_0167	-	lytic murein transglycosylase
167	 48.94	0	202029..203303	-	424	148651984	-	PsycPRwf_0168	-	A/G-specific adenine glycosylase
168	 47.43	0	203433..204404	-	323	148651985	rbgA	PsycPRwf_0169	-	ribosomal biogenesis GTPase
169	 49.80	+1	204627..205367	-	246	148651986	-	PsycPRwf_0170	-	dienelactone hydrolase
170	 51.15	+1	205637..206113	+	158	148651987	-	PsycPRwf_0171	-	hypothetical protein
171	 46.97	0	206272..207525	-	417	148651988	-	PsycPRwf_0172	-	Rh family protein/ammonium transporter
172	 44.25	0	207634..207972	-	112	148651989	-	PsycPRwf_0173	-	nitrogen regulatory protein P-II
173	 49.48	+1	208359..209219	-	286	148651990	-	PsycPRwf_0174	-	UspA domain-containing protein
174	 48.17	0	209376..210878	-	500	148651991	-	PsycPRwf_0175	-	sulphate transporter
175	 50.00	+1	211558..213015	+	485	148651992	murD	PsycPRwf_0176	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
176	 47.23	0	213137..214345	+	402	148651993	-	PsycPRwf_0177	-	cell cycle protein
177	 42.01	-1	214403..215509	-	368	148651994	-	PsycPRwf_0178	-	IS605 family transposase OrfB
178	 51.33	+1	215789..216727	-	312	148651995	-	PsycPRwf_0179	-	glutamate--tRNA ligase
179	 43.45	0	216759..217193	-	144	148651996	-	PsycPRwf_0180	-	TraR/DksA family transcriptional regulator
180	 46.43	0	217357..218379	-	340	148651997	-	PsycPRwf_0181	-	calcineurin phosphoesterase C-terminal domain-containing protein
181	 51.32	+1	218419..219213	-	264	148651998	-	PsycPRwf_0182	-	ABC-3 protein
182	 50.24	+1	219327..220154	-	275	148651999	-	PsycPRwf_0183	-	ABC transporter related
183	 48.88	0	220278..220856	-	192	148652000	-	PsycPRwf_0184	-	ferric uptake regulator family protein
184	 49.08	0	221384..222361	+	325	148652001	-	PsycPRwf_0185	-	periplasmic solute binding protein
185	 41.24	-1	222498..222965	+	155	148652002	-	PsycPRwf_0186	-	hypothetical protein
186	 41.06	-1	223321..224187	+	288	148652003	-	PsycPRwf_0187	-	F0F1 ATP synthase subunit A
187	 43.90	0	224222..224467	+	81	148652004	-	PsycPRwf_0188	-	F0F1 ATP synthase subunit C
188	 43.95	0	224572..225042	+	156	148652005	-	PsycPRwf_0189	-	F0F1 ATP synthase subunit B
189	 43.17	0	225257..225886	+	209	148652006	-	PsycPRwf_0190	-	F0F1 ATP synthase subunit delta
190	 44.60	0	226051..227595	+	514	148652007	-	PsycPRwf_0191	-	F0F1 ATP synthase subunit alpha
191	 42.40	-1	227691..228572	+	293	148652008	-	PsycPRwf_0192	-	F0F1 ATP synthase subunit gamma
192	 46.15	0	228611..230038	+	475	148652009	-	PsycPRwf_0193	-	F0F1 ATP synthase subunit beta
193	 45.32	0	230169..230585	+	138	148652010	-	PsycPRwf_0194	-	ATP synthase F1, epsilon subunit
194	 41.19	-1	230778..231884	+	368	148652011	-	PsycPRwf_0195	-	IS605 family transposase OrfB
195	 44.91	0	232013..232729	+	238	148652012	-	PsycPRwf_0196	-	two component transcriptional regulator
196	 41.73	-1	232943..234049	+	368	148652013	-	PsycPRwf_0197	-	IS605 family transposase OrfB
197	 46.51	0	234457..236148	+	563	148652014	-	PsycPRwf_0198	-	integral membrane sensor signal transduction histidine kinase
198	 48.53	0	236205..237665	-	486	148652015	-	PsycPRwf_0199	-	integral membrane sensor signal transduction histidine kinase
199	 44.70	0	237787..238050	+	87	148652016	rpsP	PsycPRwf_0200	-	30S ribosomal protein S16
200	 45.95	0	238140..238670	+	176	148652017	-	PsycPRwf_0201	-	16S rRNA processing protein RimM
201	 47.51	0	238761..239522	+	253	148652018	-	PsycPRwf_0202	-	tRNA (guanine-N1)-methyltransferase
202	 44.36	0	239796..240212	+	138	148652019	rplS	PsycPRwf_0203	-	50S ribosomal protein L19
203	 48.98	0	240499..242013	+	504	148652020	-	PsycPRwf_0204	-	hypothetical protein
204	 50.14	+1	242157..244001	+	614	148652021	-	PsycPRwf_0205	-	excinuclease ABC, C subunit
205	 41.82	-1	244034..245140	-	368	148652022	-	PsycPRwf_0206	-	IS605 family transposase OrfB
206	 50.88	+1	245311..246102	-	263	148652023	-	PsycPRwf_0207	-	hypothetical protein
207	 52.85	+2	246171..247502	-	443	148652024	-	PsycPRwf_0208	-	Beta-ketoacyl synthase-like protein
208	 48.66	0	247575..247985	-	136	148652025	-	PsycPRwf_0209	-	hypothetical protein
209	 42.50	-1	248056..248415	-	119	148652026	-	PsycPRwf_0210	-	hypothetical protein
210	 45.65	0	248480..248812	-	110	148652027	-	PsycPRwf_0211	-	BolA family protein
211	 49.50	+1	249034..249837	-	267	148652028	-	PsycPRwf_0212	-	peptidase M48, Ste24p
212	 49.03	0	251656..252891	+	411	148652029	-	PsycPRwf_0213	-	trimethylamine-N-oxide reductase c-type cytochrome TorC
213	 51.53	+1	252948..255470	+	840	148652030	-	PsycPRwf_0214	-	trimethylamine-N-oxide reductase TorA
214	 49.55	+1	255591..256256	+	221	148652031	-	PsycPRwf_0215	-	cytoplasmic chaperone TorD family protein
215	 51.56	+1	256323..257633	+	436	148652032	-	PsycPRwf_0216	-	molybdenum cofactor synthesis domain-containing protein
216	 48.02	0	257966..259279	+	437	148652033	moaA	PsycPRwf_0217	-	molybdenum cofactor biosynthesis protein A
217	 48.48	0	259365..259892	+	175	148652034	-	PsycPRwf_0218	-	molybdenum cofactor biosynthesis protein B
218	 50.31	+1	259897..260715	+	272	148652035	-	PsycPRwf_0219	-	molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
219	 49.21	0	260928..261494	+	188	148652036	-	PsycPRwf_0220	-	molybdenum cofactor biosynthesis protein C
220	 45.27	0	261699..261941	+	80	148652037	-	PsycPRwf_0221	-	molybdopterin converting factor, subunit 1
221	 47.29	0	261973..262488	+	171	148652038	-	PsycPRwf_0222	-	molybdopterin biosynthesis MoaE protein
222	 50.07	+1	262616..263374	-	252	148652039	-	PsycPRwf_0223	-	molybdate ABC transporter, inner membrane subunit
223	 49.08	0	263587..264513	-	308	148652040	-	PsycPRwf_0224	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
224	 47.37	0	264720..265916	-	398	148652041	-	PsycPRwf_0225	-	aromatic amino acid aminotransferase
225	 47.74	0	266107..267591	+	494	148652042	-	PsycPRwf_0226	-	Na+/H+ antiporter NhaC
226	 45.08	0	267648..268703	+	351	148652043	-	PsycPRwf_0227	-	UDP-glucose 4-epimerase
227	 45.11	0	268787..270280	-	497	148652044	-	PsycPRwf_0228	-	hypothetical protein
228	 38.07	-2	270520..272040	-	506	148652045	-	PsycPRwf_0229	-	NAD-dependent epimerase/dehydratase
229	 34.22	-2	272116..273240	-	374	148652046	-	PsycPRwf_0230	-	glycosyl transferase, group 1
230	 33.95	-2	273465..274601	-	378	148652047	-	PsycPRwf_0231	-	glycosyl transferase, group 1
231	 38.10	-2	275575..275700	-	41	148652048	-	PsycPRwf_0233	-	hypothetical protein
232	 46.26	0	275990..276577	-	195	148652049	-	PsycPRwf_0234	-	integrase catalytic subunit
233	 44.23	0	276694..277005	-	103	148652050	-	PsycPRwf_0235	-	transposase IS3/IS911 family protein
234	 32.20	-2	277178..278323	-	381	148652051	-	PsycPRwf_0236	-	hypothetical protein
235	 39.70	-1	279538..279804	-	88	148652052	-	PsycPRwf_0240	-	transposase IS3/IS911 family protein
236	 36.90	-2	279954..281918	-	654	148652053	-	PsycPRwf_0241	-	asparagine synthase (glutamine-hydrolyzing)
237	 32.38	-2	281928..282974	-	348	148652054	-	PsycPRwf_0242	-	glycosyl transferase, group 1
238	 35.59	-2	283023..284441	-	472	148652055	-	PsycPRwf_0243	-	polysaccharide biosynthesis protein
239	 33.67	-2	284432..285613	-	393	148652056	-	PsycPRwf_0244	-	glycosyl transferase, group 1
240	 42.64	0	285617..286690	-	357	148652057	-	PsycPRwf_0245	-	DegT/DnrJ/EryC1/StrS aminotransferase
241	 40.89	-1	286731..287312	-	193	148652058	-	PsycPRwf_0246	-	hexapaptide repeat-containing transferase
242	 36.99	-2	287330..288286	-	318	148652059	-	PsycPRwf_0247	-	oxidoreductase domain-containing protein
243	 44.57	0	288338..289360	-	340	148652060	-	PsycPRwf_0248	-	NAD-dependent epimerase/dehydratase
244	 40.79	-1	289427..290713	-	428	148652061	-	PsycPRwf_0249	-	UDP-glucose/GDP-mannose dehydrogenase
245	 41.79	-1	290754..292751	-	665	148652062	-	PsycPRwf_0250	-	polysaccharide biosynthesis protein CapD
246	 39.10	-2	292810..295065	-	751	148652063	-	PsycPRwf_0251	-	non-specific protein-tyrosine kinase
247	 41.20	-1	295143..295574	-	143	148652064	-	PsycPRwf_0252	-	protein tyrosine phosphatase
248	 43.48	0	295631..296734	-	367	148652065	-	PsycPRwf_0253	-	polysaccharide export protein
249	 45.36	0	296953..299181	-	742	148652066	-	PsycPRwf_0254	-	UvrD/REP helicase
45.93	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.