IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1925	 43.56	0	2423577..2424026	-	149	148653742	-	PsycPRwf_1945	-	hypothetical protein
1926	 42.62	0	2424243..2425718	-	491	148653743	-	PsycPRwf_1946	-	hypothetical protein
1927	 40.91	-1	2426040..2427584	-	514	148653744	-	PsycPRwf_1947	-	long-chain fatty acid ABC transporter
1928	 43.40	0	2427880..2429439	-	519	148653745	-	PsycPRwf_1948	-	membrane protein involved in aromatic hydrocarbon degradation
1929	 46.43	0	2429816..2430067	-	83	148653746	-	PsycPRwf_1949	-	hypothetical protein
1930	 47.09	0	2430235..2432196	+	653	148653747	-	PsycPRwf_1950	-	ABC transporter related
1931	 47.15	0	2432315..2433436	+	373	148653748	-	PsycPRwf_1951	-	lipid A biosynthesis acyltransferase
1932	 42.86	0	2433528..2435396	-	622	148653749	-	PsycPRwf_1952	-	triacylglycerol lipase
1933	 45.54	0	2435897..2436994	+	365	148653750	-	PsycPRwf_1953	-	tryptophanyl-tRNA synthetase
1934	 46.20	0	2437007..2437954	+	315	148653751	-	PsycPRwf_1954	-	chromosome segregation and condensation protein ScpA
1935	 47.12	0	2438028..2438687	+	219	148653752	-	PsycPRwf_1955	-	putative transcriptional regulator
1936	 43.85	0	2438825..2439832	+	335	148653753	-	PsycPRwf_1956	-	alpha/beta hydrolase fold
1937	 48.94	0	2440031..2441068	+	345	148653754	-	PsycPRwf_1957	-	RNA-binding S4 domain-containing protein
1938	 49.55	+1	2441246..2441806	-	186	148653755	-	PsycPRwf_1958	-	hypothetical protein
1939	 43.99	0	2441883..2442473	-	196	148653756	-	PsycPRwf_1959	-	hypothetical protein
1940	 45.45	0	2442694..2443287	+	197	148653757	-	PsycPRwf_1960	-	lysine exporter protein LysE/YggA
1941	 45.02	0	2443478..2444119	-	213	148653758	-	PsycPRwf_1961	-	multiple antibiotic resistance (MarC)-related protein
1942	 50.61	+1	2444355..2445251	-	298	148653759	-	PsycPRwf_1962	-	nicotinate-nucleotide pyrophosphorylase
1943	 46.98	0	2445435..2446577	-	380	148653760	-	PsycPRwf_1963	-	hypothetical protein
1944	 49.24	0	2446999..2448186	+	395	148653761	-	PsycPRwf_1964	-	quinolinate synthetase
1945	 52.72	+2	2448297..2450168	+	623	148653762	-	PsycPRwf_1965	-	L-aspartate oxidase
1946	 46.79	0	2450322..2451302	+	326	148653763	-	PsycPRwf_1966	-	protein of unknown function DUF340, membrane
1947	 38.79	-2	2451310..2451951	-	213	148653764	-	PsycPRwf_1967	-	OmpA/MotB domain-containing protein
1948	 51.83	+1	2451952..2453211	-	419	148653765	-	PsycPRwf_1968	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
1949	 50.66	+1	2453295..2454581	-	428	148653766	-	PsycPRwf_1969	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
1950	 46.23	0	2455031..2456170	+	379	148653767	-	PsycPRwf_1970	-	PhoH family protein
1951	 46.95	0	2456327..2456884	+	185	148653768	-	PsycPRwf_1971	-	hypothetical protein
1952	 48.67	0	2456988..2458448	+	486	148653769	-	PsycPRwf_1972	-	lytic murein transglycosylase
1953	 42.98	0	2458646..2459578	-	310	148653770	-	PsycPRwf_1973	-	hypothetical protein
1954	 39.77	-1	2459819..2460160	-	113	148653771	-	PsycPRwf_1974	-	hypothetical protein
1955	 46.29	0	2460640..2462028	-	462	148653772	fumC	PsycPRwf_1975	-	fumarate hydratase
1956	 51.38	+1	2462215..2462829	+	204	148653773	-	PsycPRwf_1976	-	5-formyltetrahydrofolate cyclo-ligase
1957	 49.68	+1	2462839..2463150	+	103	148653774	-	PsycPRwf_1977	-	hypothetical protein
1958	 49.32	+1	2463286..2464680	-	464	148653775	-	PsycPRwf_1978	-	Na+/H+ antiporter NhaC
1959	 48.88	0	2465179..2467758	+	859	148653776	-	PsycPRwf_1979	-	ATP-dependent protease La
1960	 48.91	0	2468004..2468555	+	183	148653777	-	PsycPRwf_1980	-	superoxide dismutase, copper/zinc binding
1961	 46.76	0	2469061..2470110	+	349	148653778	recA	PsycPRwf_1981	-	recombinase A
1962	 47.17	0	2470257..2471492	+	411	148653779	-	PsycPRwf_1982	-	hypothetical protein
1963	 46.50	0	2471533..2472132	-	199	148653780	-	PsycPRwf_1983	-	GCN5-related N-acetyltransferase
1964	 49.32	+1	2472266..2473435	+	389	148653781	-	PsycPRwf_1984	-	tRNA pseudouridine synthase D, TruD
1965	 49.35	+1	2473459..2474388	-	309	148653782	-	PsycPRwf_1985	-	phosphotransferase domain-containing protein
1966	 43.33	0	2474626..2475195	+	189	148653783	-	PsycPRwf_1986	-	intracellular septation protein A
1967	 50.83	+1	2475220..2475522	+	100	148653784	-	PsycPRwf_1987	-	YciI-like protein
1968	 52.73	+2	2475559..2476125	+	188	148653785	-	PsycPRwf_1988	-	hypothetical protein
1969	 48.65	0	2476196..2478415	+	739	148653786	-	PsycPRwf_1989	-	hypothetical protein
1970	 49.57	+1	2478455..2479261	-	268	148653787	-	PsycPRwf_1990	-	UBA/THIF-type NAD/FAD binding protein
1971	 45.79	0	2479369..2480259	-	296	148653788	-	PsycPRwf_1991	-	TatD-related deoxyribonuclease
1972	 51.23	+1	2480585..2481277	-	230	148653789	-	PsycPRwf_1992	-	single-strand binding protein
1973	 47.91	0	2481374..2482738	-	454	148653790	-	PsycPRwf_1993	-	major facilitator transporter
1974	 42.25	-1	2482749..2483006	-	85	148653791	-	PsycPRwf_1994	-	hypothetical protein
1975	 49.68	+1	2483273..2486251	+	992	148653792	-	PsycPRwf_1995	-	excinuclease ABC, A subunit
1976	 31.39	-2	2486375..2488126	+	583	148653793	-	PsycPRwf_1996	-	hypothetical protein
1977	 50.54	+1	2488190..2489293	+	367	148653794	-	PsycPRwf_1997	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1978	 51.06	+1	2489349..2489630	-	93	148653795	-	PsycPRwf_1998	-	hypothetical protein
1979	 50.24	+1	2489857..2490915	+	352	148653796	-	PsycPRwf_1999	-	alpha/beta hydrolase domain-containing protein
1980	 45.34	0	2491081..2491713	+	210	148653797	-	PsycPRwf_2000	-	nitroreductase
1981	 48.92	0	2491959..2492933	+	324	148653798	-	PsycPRwf_2001	-	hypothetical protein
1982	 47.78	0	2493172..2493960	+	262	148653799	-	PsycPRwf_2002	-	hypothetical protein
1983	 43.93	0	2493962..2494414	+	150	148653800	-	PsycPRwf_2003	-	hypothetical protein
1984	 45.21	0	2494634..2495989	+	451	148653801	-	PsycPRwf_2004	-	glutathione reductase
1985	 43.61	0	2496116..2496592	-	158	148653802	smpB	PsycPRwf_2005	-	SsrA-binding protein
1986	 43.92	0	2497022..2497531	+	169	148653803	-	PsycPRwf_2006	-	pantetheine-phosphate adenylyltransferase
1987	 42.06	-1	2497636..2497887	+	83	148653804	-	PsycPRwf_2007	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1988	 48.57	0	2498235..2500688	+	817	148653805	-	PsycPRwf_2008	-	hypothetical protein
1989	 49.76	+1	2500877..2501710	+	277	148653806	-	PsycPRwf_2009	-	protein-disulfide isomerase-like protein
1990	 46.34	0	2502025..2503362	+	445	148653807	-	PsycPRwf_2010	-	homoserine dehydrogenase
1991	 50.08	+1	2503482..2504663	+	393	148653808	-	PsycPRwf_2011	-	acetyl-CoA acetyltransferase
1992	 43.70	0	2505142..2505990	+	282	148653809	-	PsycPRwf_2012	-	PRC-barrel domain-containing protein
1993	 43.73	0	2506224..2506925	+	233	148653810	-	PsycPRwf_2013	-	hypothetical protein
1994	 41.37	-1	2506960..2508066	-	368	148653811	-	PsycPRwf_2014	-	IS605 family transposase OrfB
1995	 52.46	+1	2508304..2508648	-	114	148653812	-	PsycPRwf_2015	-	hypothetical protein
1996	 46.44	0	2508715..2511492	-	925	148653813	-	PsycPRwf_2016	-	preprotein translocase subunit SecA
1997	 48.54	0	2511886..2514930	+	1014	148653814	-	PsycPRwf_2017	-	DNA mismatch repair protein
1998	 45.99	0	2515141..2515464	+	107	148653815	-	PsycPRwf_2018	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1999	 41.73	-1	2515587..2515979	-	130	148653816	-	PsycPRwf_2019	-	Tfp pilus assembly protein PilE-like protein
2000	 47.12	0	2516124..2516696	-	190	148653817	-	PsycPRwf_2020	-	hypothetical protein
2001	 46.09	0	2516689..2517582	-	297	148653818	-	PsycPRwf_2021	-	hypothetical protein
2002	 47.73	0	2517579..2518592	-	337	148653819	-	PsycPRwf_2022	-	hypothetical protein
2003	 47.88	0	2518596..2519138	-	180	148653820	-	PsycPRwf_2023	-	hypothetical protein
2004	 47.51	0	2519173..2519694	-	173	148653821	-	PsycPRwf_2024	-	hypothetical protein
2005	 48.12	0	2519876..2520592	-	238	148653822	-	PsycPRwf_2025	-	amidophosphoribosyltransferase-like protein
2006	 45.16	0	2520630..2521931	-	433	148653823	-	PsycPRwf_2026	-	phospholipase A(1)
2007	 44.51	0	2522084..2522575	-	163	148653824	-	PsycPRwf_2027	-	hypothetical protein
2008	 49.57	+1	2522900..2525203	-	767	148653825	-	PsycPRwf_2028	-	cytochrome c biogenesis protein, transmembrane region
2009	 43.48	0	2525435..2526469	-	344	148653826	-	PsycPRwf_2029	-	hypothetical protein
2010	 47.15	0	2527241..2528869	-	542	148653827	-	PsycPRwf_2030	-	hypothetical protein
2011	 49.10	0	2528856..2530301	-	481	148653828	-	PsycPRwf_2031	-	GTPase subunit of restriction endonuclease-like protein
2012	 44.30	0	2530521..2531213	+	230	148653829	-	PsycPRwf_2032	-	hypothetical protein
2013	 48.04	0	2531260..2531769	-	169	148653830	-	PsycPRwf_2033	-	hypothetical protein
2014	 40.56	-1	2531857..2532576	-	239	148653831	-	PsycPRwf_2034	-	hypothetical protein
2015	 46.01	0	2532975..2537195	-	1406	148653832	-	PsycPRwf_2035	-	DNA-directed RNA polymerase subunit beta'
2016	 44.67	0	2537364..2541482	-	1372	148653833	rpoB	PsycPRwf_2036	-	DNA-directed RNA polymerase subunit beta
2017	 45.50	0	2542098..2542475	-	125	148653834	rplL	PsycPRwf_2037	-	50S ribosomal protein L7/L12
2018	 42.61	0	2542614..2543141	-	175	148653835	rplJ	PsycPRwf_2038	-	50S ribosomal protein L10
2019	 45.73	0	2543565..2544266	-	233	148653836	rplA	PsycPRwf_2039	-	50S ribosomal protein L1
2020	 45.37	0	2544267..2544698	-	143	148653837	rplK	PsycPRwf_2040	-	50S ribosomal protein L11
2021	 40.49	-1	2544819..2545349	-	176	148653838	-	PsycPRwf_2041	-	NusG antitermination factor
2022	 41.56	-1	2545516..2545989	-	157	148653839	secE	PsycPRwf_2042	-	preprotein translocase subunit SecE
2023	 46.60	0	2546482..2547672	-	396	148653840	-	PsycPRwf_2043	-	elongation factor Tu
2024	 45.40	0	2548606..2549823	-	405	148653841	-	PsycPRwf_2044	-	FHA domain-containing protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.