IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1883	 44.68	0	2364035..2364880	-	281	148653700	-	PsycPRwf_1903	-	hypothetical protein
1884	 49.57	+1	2364985..2365803	-	272	148653701	-	PsycPRwf_1904	-	type IV pilus biogenesis/stability protein PilW
1885	 49.17	0	2366004..2367215	-	403	148653702	-	PsycPRwf_1905	-	radical SAM protein
1886	 46.06	0	2367514..2367945	-	143	148653703	-	PsycPRwf_1906	-	nucleoside-diphosphate kinase
1887	 46.62	0	2368742..2370487	+	581	148653704	-	PsycPRwf_1907	-	ferredoxin-dependent glutamate synthase
1888	 45.91	0	2370508..2371437	+	309	148653705	-	PsycPRwf_1908	-	periplasmic protein-like protein
1889	 46.89	0	2371635..2372726	+	363	148653706	-	PsycPRwf_1909	-	translation-associated GTPase
1890	 48.54	0	2372963..2373580	+	205	148653707	-	PsycPRwf_1910	-	hypothetical protein
1891	 49.07	0	2373732..2375237	+	501	148653708	-	PsycPRwf_1911	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1892	 45.06	0	2375362..2376069	+	235	148653709	-	PsycPRwf_1912	-	TetR family transcriptional regulator
1893	 44.93	0	2376183..2376863	-	226	148653710	-	PsycPRwf_1913	-	TetR family transcriptional regulator
1894	 45.50	0	2376986..2377774	-	262	148653711	-	PsycPRwf_1914	-	TatD family hydrolase
1895	 48.23	0	2377927..2378718	-	263	148653712	-	PsycPRwf_1915	-	hypothetical protein
1896	 43.15	0	2379202..2379975	+	257	148653713	-	PsycPRwf_1916	-	oxidoreductase FAD/NAD(P)-binding subunit
1897	 41.78	-1	2380428..2381114	+	228	148653714	-	PsycPRwf_1917	-	hypothetical protein
1898	 41.10	-1	2381687..2382793	-	368	148653715	-	PsycPRwf_1918	-	IS605 family transposase OrfB
1899	 50.16	+1	2383299..2385551	+	750	148653716	-	PsycPRwf_1919	-	choline/carnitine/betaine transporter
1900	 37.70	-2	2385636..2388476	-	946	148653717	-	PsycPRwf_1920	-	type III restriction enzyme, res subunit
1901	 38.31	-2	2388473..2388874	-	133	148653718	-	PsycPRwf_1921	-	NUDIX hydrolase
1902	 42.46	-1	2389145..2389648	+	167	148653719	-	PsycPRwf_1922	-	peptidase
1903	 52.43	+1	2389734..2390843	+	369	148653720	-	PsycPRwf_1923	-	DNA-directed DNA polymerase
1904	 47.57	0	2391011..2392183	+	390	148653721	-	PsycPRwf_1924	-	S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
1905	 44.31	0	2392409..2392891	+	160	148653722	-	PsycPRwf_1925	-	GAF domain-containing protein
1906	 42.75	0	2392969..2393106	-	45	148653723	-	PsycPRwf_1926	-	hypothetical protein
1907	 46.61	0	2393370..2394521	-	383	148653724	tgt	PsycPRwf_1927	-	queuine tRNA-ribosyltransferase
1908	 37.88	-2	2394526..2394789	-	87	148653725	-	PsycPRwf_1928	-	hypothetical protein
1909	 48.88	0	2394959..2396077	+	372	148653726	-	PsycPRwf_1929	-	hypothetical protein
1910	 49.00	0	2396154..2397257	+	367	148653727	-	PsycPRwf_1930	-	asparaginase/glutaminase
1911	 53.14	+2	2397325..2398233	+	302	148653728	truA	PsycPRwf_1931	-	tRNA pseudouridine synthase A
1912	 38.67	-2	2398395..2398619	+	74	148653729	-	PsycPRwf_1932	-	translation initiation factor IF-1
1913	 47.45	0	2398792..2400045	-	417	148653730	-	PsycPRwf_1933	-	ErfK/YbiS/YcfS/YnhG family protein
1914	 48.73	0	2400278..2401381	-	367	148653731	-	PsycPRwf_1934	-	3-isopropylmalate dehydrogenase
1915	 45.01	0	2401468..2402118	-	216	148653732	leuD	PsycPRwf_1935	-	isopropylmalate isomerase small subunit
1916	 49.27	0	2402175..2403611	-	478	148653733	-	PsycPRwf_1936	-	isopropylmalate isomerase large subunit
1917	 46.46	0	2403943..2404818	+	291	148653734	-	PsycPRwf_1937	-	LysR family transcriptional regulator
1918	 39.74	-1	2405289..2405990	-	233	148653735	-	PsycPRwf_1938	-	IS1 transposase
1919	 46.56	0	2406062..2407558	+	498	148653736	-	PsycPRwf_1939	-	sodium/proline symporter
1920	 43.11	0	2407654..2409207	-	517	148653737	-	PsycPRwf_1940	-	hypothetical protein
1921	 42.76	0	2409534..2412356	-	940	148653738	-	PsycPRwf_1941	-	hypothetical protein
1922	 46.86	0	2412569..2422246	-	3225	148653739	-	PsycPRwf_1942	-	hypothetical protein
1923	 41.38	-1	2422465..2422725	+	86	148653740	-	PsycPRwf_1943	-	transposase IS3/IS911 family protein
1924	 41.84	-1	2422812..2423540	+	242	148653741	-	PsycPRwf_1944	-	integrase catalytic subunit
1925	 43.56	0	2423577..2424026	-	149	148653742	-	PsycPRwf_1945	-	hypothetical protein
1926	 42.62	0	2424243..2425718	-	491	148653743	-	PsycPRwf_1946	-	hypothetical protein
1927	 40.91	-1	2426040..2427584	-	514	148653744	-	PsycPRwf_1947	-	long-chain fatty acid ABC transporter
1928	 43.40	0	2427880..2429439	-	519	148653745	-	PsycPRwf_1948	-	membrane protein involved in aromatic hydrocarbon degradation
1929	 46.43	0	2429816..2430067	-	83	148653746	-	PsycPRwf_1949	-	hypothetical protein
1930	 47.09	0	2430235..2432196	+	653	148653747	-	PsycPRwf_1950	-	ABC transporter related
1931	 47.15	0	2432315..2433436	+	373	148653748	-	PsycPRwf_1951	-	lipid A biosynthesis acyltransferase
1932	 42.86	0	2433528..2435396	-	622	148653749	-	PsycPRwf_1952	-	triacylglycerol lipase
1933	 45.54	0	2435897..2436994	+	365	148653750	-	PsycPRwf_1953	-	tryptophanyl-tRNA synthetase
1934	 46.20	0	2437007..2437954	+	315	148653751	-	PsycPRwf_1954	-	chromosome segregation and condensation protein ScpA
1935	 47.12	0	2438028..2438687	+	219	148653752	-	PsycPRwf_1955	-	putative transcriptional regulator
1936	 43.85	0	2438825..2439832	+	335	148653753	-	PsycPRwf_1956	-	alpha/beta hydrolase fold
1937	 48.94	0	2440031..2441068	+	345	148653754	-	PsycPRwf_1957	-	RNA-binding S4 domain-containing protein
1938	 49.55	+1	2441246..2441806	-	186	148653755	-	PsycPRwf_1958	-	hypothetical protein
1939	 43.99	0	2441883..2442473	-	196	148653756	-	PsycPRwf_1959	-	hypothetical protein
1940	 45.45	0	2442694..2443287	+	197	148653757	-	PsycPRwf_1960	-	lysine exporter protein LysE/YggA
1941	 45.02	0	2443478..2444119	-	213	148653758	-	PsycPRwf_1961	-	multiple antibiotic resistance (MarC)-related protein
1942	 50.61	+1	2444355..2445251	-	298	148653759	-	PsycPRwf_1962	-	nicotinate-nucleotide pyrophosphorylase
1943	 46.98	0	2445435..2446577	-	380	148653760	-	PsycPRwf_1963	-	hypothetical protein
1944	 49.24	0	2446999..2448186	+	395	148653761	-	PsycPRwf_1964	-	quinolinate synthetase
1945	 52.72	+2	2448297..2450168	+	623	148653762	-	PsycPRwf_1965	-	L-aspartate oxidase
1946	 46.79	0	2450322..2451302	+	326	148653763	-	PsycPRwf_1966	-	protein of unknown function DUF340, membrane
1947	 38.79	-2	2451310..2451951	-	213	148653764	-	PsycPRwf_1967	-	OmpA/MotB domain-containing protein
1948	 51.83	+1	2451952..2453211	-	419	148653765	-	PsycPRwf_1968	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
1949	 50.66	+1	2453295..2454581	-	428	148653766	-	PsycPRwf_1969	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
1950	 46.23	0	2455031..2456170	+	379	148653767	-	PsycPRwf_1970	-	PhoH family protein
1951	 46.95	0	2456327..2456884	+	185	148653768	-	PsycPRwf_1971	-	hypothetical protein
1952	 48.67	0	2456988..2458448	+	486	148653769	-	PsycPRwf_1972	-	lytic murein transglycosylase
1953	 42.98	0	2458646..2459578	-	310	148653770	-	PsycPRwf_1973	-	hypothetical protein
1954	 39.77	-1	2459819..2460160	-	113	148653771	-	PsycPRwf_1974	-	hypothetical protein
1955	 46.29	0	2460640..2462028	-	462	148653772	fumC	PsycPRwf_1975	-	fumarate hydratase
1956	 51.38	+1	2462215..2462829	+	204	148653773	-	PsycPRwf_1976	-	5-formyltetrahydrofolate cyclo-ligase
1957	 49.68	+1	2462839..2463150	+	103	148653774	-	PsycPRwf_1977	-	hypothetical protein
1958	 49.32	+1	2463286..2464680	-	464	148653775	-	PsycPRwf_1978	-	Na+/H+ antiporter NhaC
1959	 48.88	0	2465179..2467758	+	859	148653776	-	PsycPRwf_1979	-	ATP-dependent protease La
1960	 48.91	0	2468004..2468555	+	183	148653777	-	PsycPRwf_1980	-	superoxide dismutase, copper/zinc binding
1961	 46.76	0	2469061..2470110	+	349	148653778	recA	PsycPRwf_1981	-	recombinase A
1962	 47.17	0	2470257..2471492	+	411	148653779	-	PsycPRwf_1982	-	hypothetical protein
1963	 46.50	0	2471533..2472132	-	199	148653780	-	PsycPRwf_1983	-	GCN5-related N-acetyltransferase
1964	 49.32	+1	2472266..2473435	+	389	148653781	-	PsycPRwf_1984	-	tRNA pseudouridine synthase D, TruD
1965	 49.35	+1	2473459..2474388	-	309	148653782	-	PsycPRwf_1985	-	phosphotransferase domain-containing protein
1966	 43.33	0	2474626..2475195	+	189	148653783	-	PsycPRwf_1986	-	intracellular septation protein A
1967	 50.83	+1	2475220..2475522	+	100	148653784	-	PsycPRwf_1987	-	YciI-like protein
1968	 52.73	+2	2475559..2476125	+	188	148653785	-	PsycPRwf_1988	-	hypothetical protein
1969	 48.65	0	2476196..2478415	+	739	148653786	-	PsycPRwf_1989	-	hypothetical protein
1970	 49.57	+1	2478455..2479261	-	268	148653787	-	PsycPRwf_1990	-	UBA/THIF-type NAD/FAD binding protein
1971	 45.79	0	2479369..2480259	-	296	148653788	-	PsycPRwf_1991	-	TatD-related deoxyribonuclease
1972	 51.23	+1	2480585..2481277	-	230	148653789	-	PsycPRwf_1992	-	single-strand binding protein
1973	 47.91	0	2481374..2482738	-	454	148653790	-	PsycPRwf_1993	-	major facilitator transporter
1974	 42.25	-1	2482749..2483006	-	85	148653791	-	PsycPRwf_1994	-	hypothetical protein
1975	 49.68	+1	2483273..2486251	+	992	148653792	-	PsycPRwf_1995	-	excinuclease ABC, A subunit
1976	 31.39	-2	2486375..2488126	+	583	148653793	-	PsycPRwf_1996	-	hypothetical protein
1977	 50.54	+1	2488190..2489293	+	367	148653794	-	PsycPRwf_1997	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1978	 51.06	+1	2489349..2489630	-	93	148653795	-	PsycPRwf_1998	-	hypothetical protein
1979	 50.24	+1	2489857..2490915	+	352	148653796	-	PsycPRwf_1999	-	alpha/beta hydrolase domain-containing protein
1980	 45.34	0	2491081..2491713	+	210	148653797	-	PsycPRwf_2000	-	nitroreductase
1981	 48.92	0	2491959..2492933	+	324	148653798	-	PsycPRwf_2001	-	hypothetical protein
1982	 47.78	0	2493172..2493960	+	262	148653799	-	PsycPRwf_2002	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.