IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1820	 44.52	0	2288422..2289807	+	461	148653637	-	PsycPRwf_1840	-	acyltransferase ws/dgat/mgat family protein
1821	 46.34	0	2289930..2291390	+	486	148653638	-	PsycPRwf_1841	-	acyltransferase ws/dgat/mgat family protein
1822	 46.86	0	2291393..2291902	-	169	148653639	-	PsycPRwf_1842	-	hypothetical protein
1823	 48.76	0	2292039..2295137	-	1032	148653640	-	PsycPRwf_1843	-	peptidase M16C associated domain-containing protein
1824	 46.99	0	2295297..2295977	-	226	148653641	-	PsycPRwf_1844	-	phosphoglycerate mutase
1825	 49.22	0	2296583..2297608	+	341	148653642	-	PsycPRwf_1845	-	ribokinase-like domain-containing protein
1826	 48.71	0	2297750..2299063	-	437	148653643	-	PsycPRwf_1846	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1827	 47.47	0	2299305..2299955	-	216	148653644	-	PsycPRwf_1847	-	HesB/YadR/YfhF-family protein
1828	 44.94	0	2300337..2301611	+	424	148653645	-	PsycPRwf_1848	-	hypothetical protein
1829	 46.93	0	2301746..2302738	+	330	148653646	-	PsycPRwf_1849	-	transporter DMT superfamily protein
1830	 45.56	0	2302916..2303545	+	209	148653647	-	PsycPRwf_1850	-	glutathione S-transferase domain-containing protein
1831	 49.04	0	2303763..2304851	+	362	148653648	-	PsycPRwf_1851	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
1832	 47.21	0	2304979..2306376	+	465	148653649	-	PsycPRwf_1852	-	putative nicotinate phosphoribosyltransferase
1833	 48.36	0	2306642..2307433	+	263	148653650	-	PsycPRwf_1853	-	GDSL family lipase
1834	 48.41	0	2307498..2307968	-	156	148653651	-	PsycPRwf_1854	-	membrane protein-like protein
1835	 48.35	0	2307961..2309112	-	383	148653652	-	PsycPRwf_1855	-	dihydroorotase-like protein
1836	 48.94	0	2309232..2310320	-	362	148653653	pyrB	PsycPRwf_1856	-	aspartate carbamoyltransferase catalytic subunit
1837	 48.76	0	2310955..2311959	+	334	148653654	-	PsycPRwf_1857	-	fructose-1,6-bisphosphatase
1838	 43.85	0	2312150..2312986	+	278	148653655	-	PsycPRwf_1858	-	tRNA/rRNA methyltransferase (SpoU)
1839	 41.76	-1	2313069..2313875	-	268	148653656	-	PsycPRwf_1859	-	procollagen-proline dioxygenase
1840	 46.26	0	2314125..2315315	-	396	148653657	-	PsycPRwf_1860	-	elongation factor Tu
1841	 43.94	0	2315611..2317740	-	709	148653658	-	PsycPRwf_1861	-	elongation factor G
1842	 47.47	0	2318184..2318657	-	157	148653659	-	PsycPRwf_1862	-	30S ribosomal protein S7
1843	 45.07	0	2318811..2319185	-	124	148653660	rpsL	PsycPRwf_1863	-	30S ribosomal protein S12
1844	 45.61	0	2319783..2320295	+	170	148653661	-	PsycPRwf_1864	-	peptidylprolyl isomerase, FKBP-type
1845	 47.45	0	2320390..2321430	+	346	148653662	-	PsycPRwf_1865	-	aldo/keto reductase
1846	 48.11	0	2321637..2322509	-	290	148653663	-	PsycPRwf_1866	-	phospholipid/glycerol acyltransferase
1847	 47.99	0	2322839..2323657	-	272	148653664	-	PsycPRwf_1867	-	phospholipid/glycerol acyltransferase
1848	 47.58	0	2324245..2325690	+	481	148653665	-	PsycPRwf_1868	-	GTP-binding protein, HSR1-related
1849	 47.85	0	2326095..2326535	+	146	148653666	-	PsycPRwf_1869	-	hypothetical protein
1850	 46.38	0	2326547..2327251	+	234	148653667	-	PsycPRwf_1870	-	LrgB family protein
1851	 43.85	0	2327599..2328444	+	281	148653668	-	PsycPRwf_1871	-	lytic transglycosylase, catalytic
1852	 40.00	-1	2328578..2328817	-	79	148653669	-	PsycPRwf_1872	-	hypothetical protein
1853	 46.75	0	2329112..2330095	-	327	148653670	-	PsycPRwf_1873	-	malate dehydrogenase
1854	 47.15	0	2330561..2332681	-	706	148653671	-	PsycPRwf_1874	-	lytic transglycosylase, catalytic
1855	 45.62	0	2333189..2334661	+	490	148653672	-	PsycPRwf_1875	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1856	 46.81	0	2334747..2335421	-	224	148653673	-	PsycPRwf_1876	-	lysine exporter protein LysE/YggA
1857	 47.16	0	2335503..2336717	-	404	148653674	-	PsycPRwf_1877	-	acetylornithine deacetylase
1858	 48.10	0	2336905..2337561	-	218	148653675	-	PsycPRwf_1878	-	hypothetical protein
1859	 47.89	0	2337798..2338271	+	157	148653676	-	PsycPRwf_1879	-	hypothetical protein
1860	 44.96	0	2338441..2338956	+	171	148653677	-	PsycPRwf_1880	-	hypothetical protein
1861	 46.44	0	2338963..2339412	-	149	148653678	-	PsycPRwf_1881	-	hypothetical protein
1862	 47.20	0	2339811..2341469	+	552	148653679	-	PsycPRwf_1882	-	NAD+ synthetase
1863	 49.37	+1	2341576..2342292	-	238	148653680	-	PsycPRwf_1883	-	alanine racemase domain-containing protein
1864	 49.26	0	2342450..2343529	+	359	148653681	-	PsycPRwf_1884	-	twitching motility protein
1865	 41.20	-1	2343661..2344092	-	143	148653682	-	PsycPRwf_1885	-	ferric uptake regulator family protein
1866	 41.87	-1	2344377..2344751	+	124	148653683	-	PsycPRwf_1886	-	SmpA/OmlA domain-containing protein
1867	 47.79	0	2344953..2345291	-	112	148653684	-	PsycPRwf_1887	-	hypothetical protein
1868	 49.29	0	2345288..2346409	-	373	148653685	-	PsycPRwf_1888	-	hypothetical protein
1869	 46.40	0	2346657..2347322	-	221	148653686	-	PsycPRwf_1889	-	cytochrome c, class I
1870	 47.25	0	2347738..2348046	-	102	148653687	-	PsycPRwf_1890	-	hypothetical protein
1871	 46.07	0	2348761..2349459	+	232	148653688	-	PsycPRwf_1891	-	GTP-binding protein, HSR1-related
1872	 48.86	0	2349728..2352568	+	946	148653689	ileS	PsycPRwf_1892	-	isoleucyl-tRNA synthetase
1873	 48.44	0	2352561..2353169	+	202	148653690	-	PsycPRwf_1893	-	lipoprotein signal peptidase
1874	 46.67	0	2353276..2353680	-	134	148653691	-	PsycPRwf_1894	-	hypothetical protein
1875	 48.74	0	2353979..2355718	+	579	148653692	-	PsycPRwf_1895	-	FAD dependent oxidoreductase
1876	 47.47	0	2355798..2356490	-	230	148653693	-	PsycPRwf_1896	-	hypothetical protein
1877	 46.17	0	2356730..2357695	+	321	148653694	-	PsycPRwf_1897	-	alpha/beta hydrolase-like protein
1878	 46.10	0	2357931..2358956	+	341	148653695	-	PsycPRwf_1898	-	hypothetical protein
1879	 49.46	+1	2359088..2360284	-	398	148653696	-	PsycPRwf_1899	-	Pyrrolo-quinoline quinone
1880	 49.46	+1	2360440..2361276	-	278	148653697	-	PsycPRwf_1900	-	hypothetical protein
1881	 48.89	0	2361364..2362674	-	436	148653698	hisS	PsycPRwf_1901	-	histidyl-tRNA synthetase
1882	 47.69	0	2362779..2363927	-	382	148653699	-	PsycPRwf_1902	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
1883	 44.68	0	2364035..2364880	-	281	148653700	-	PsycPRwf_1903	-	hypothetical protein
1884	 49.57	+1	2364985..2365803	-	272	148653701	-	PsycPRwf_1904	-	type IV pilus biogenesis/stability protein PilW
1885	 49.17	0	2366004..2367215	-	403	148653702	-	PsycPRwf_1905	-	radical SAM protein
1886	 46.06	0	2367514..2367945	-	143	148653703	-	PsycPRwf_1906	-	nucleoside-diphosphate kinase
1887	 46.62	0	2368742..2370487	+	581	148653704	-	PsycPRwf_1907	-	ferredoxin-dependent glutamate synthase
1888	 45.91	0	2370508..2371437	+	309	148653705	-	PsycPRwf_1908	-	periplasmic protein-like protein
1889	 46.89	0	2371635..2372726	+	363	148653706	-	PsycPRwf_1909	-	translation-associated GTPase
1890	 48.54	0	2372963..2373580	+	205	148653707	-	PsycPRwf_1910	-	hypothetical protein
1891	 49.07	0	2373732..2375237	+	501	148653708	-	PsycPRwf_1911	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1892	 45.06	0	2375362..2376069	+	235	148653709	-	PsycPRwf_1912	-	TetR family transcriptional regulator
1893	 44.93	0	2376183..2376863	-	226	148653710	-	PsycPRwf_1913	-	TetR family transcriptional regulator
1894	 45.50	0	2376986..2377774	-	262	148653711	-	PsycPRwf_1914	-	TatD family hydrolase
1895	 48.23	0	2377927..2378718	-	263	148653712	-	PsycPRwf_1915	-	hypothetical protein
1896	 43.15	0	2379202..2379975	+	257	148653713	-	PsycPRwf_1916	-	oxidoreductase FAD/NAD(P)-binding subunit
1897	 41.78	-1	2380428..2381114	+	228	148653714	-	PsycPRwf_1917	-	hypothetical protein
1898	 41.10	-1	2381687..2382793	-	368	148653715	-	PsycPRwf_1918	-	IS605 family transposase OrfB
1899	 50.16	+1	2383299..2385551	+	750	148653716	-	PsycPRwf_1919	-	choline/carnitine/betaine transporter
1900	 37.70	-2	2385636..2388476	-	946	148653717	-	PsycPRwf_1920	-	type III restriction enzyme, res subunit
1901	 38.31	-2	2388473..2388874	-	133	148653718	-	PsycPRwf_1921	-	NUDIX hydrolase
1902	 42.46	-1	2389145..2389648	+	167	148653719	-	PsycPRwf_1922	-	peptidase
1903	 52.43	+1	2389734..2390843	+	369	148653720	-	PsycPRwf_1923	-	DNA-directed DNA polymerase
1904	 47.57	0	2391011..2392183	+	390	148653721	-	PsycPRwf_1924	-	S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
1905	 44.31	0	2392409..2392891	+	160	148653722	-	PsycPRwf_1925	-	GAF domain-containing protein
1906	 42.75	0	2392969..2393106	-	45	148653723	-	PsycPRwf_1926	-	hypothetical protein
1907	 46.61	0	2393370..2394521	-	383	148653724	tgt	PsycPRwf_1927	-	queuine tRNA-ribosyltransferase
1908	 37.88	-2	2394526..2394789	-	87	148653725	-	PsycPRwf_1928	-	hypothetical protein
1909	 48.88	0	2394959..2396077	+	372	148653726	-	PsycPRwf_1929	-	hypothetical protein
1910	 49.00	0	2396154..2397257	+	367	148653727	-	PsycPRwf_1930	-	asparaginase/glutaminase
1911	 53.14	+2	2397325..2398233	+	302	148653728	truA	PsycPRwf_1931	-	tRNA pseudouridine synthase A
1912	 38.67	-2	2398395..2398619	+	74	148653729	-	PsycPRwf_1932	-	translation initiation factor IF-1
1913	 47.45	0	2398792..2400045	-	417	148653730	-	PsycPRwf_1933	-	ErfK/YbiS/YcfS/YnhG family protein
1914	 48.73	0	2400278..2401381	-	367	148653731	-	PsycPRwf_1934	-	3-isopropylmalate dehydrogenase
1915	 45.01	0	2401468..2402118	-	216	148653732	leuD	PsycPRwf_1935	-	isopropylmalate isomerase small subunit
1916	 49.27	0	2402175..2403611	-	478	148653733	-	PsycPRwf_1936	-	isopropylmalate isomerase large subunit
1917	 46.46	0	2403943..2404818	+	291	148653734	-	PsycPRwf_1937	-	LysR family transcriptional regulator
1918	 39.74	-1	2405289..2405990	-	233	148653735	-	PsycPRwf_1938	-	IS1 transposase
1919	 46.56	0	2406062..2407558	+	498	148653736	-	PsycPRwf_1939	-	sodium/proline symporter
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.