IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1786	 45.09	0	2242085..2243122	-	345	148653603	-	PsycPRwf_1806	-	protein kinase
1787	 45.23	0	2243272..2244162	+	296	148653604	-	PsycPRwf_1807	-	hypothetical protein
1788	 47.61	0	2244240..2245304	-	354	148653605	-	PsycPRwf_1808	-	ribonuclease Z
1789	 47.76	0	2245313..2245804	-	163	148653606	-	PsycPRwf_1809	-	dehydratase
1790	 46.67	0	2245959..2247248	-	429	148653607	-	PsycPRwf_1810	-	adenylosuccinate synthetase
1791	 44.29	0	2247370..2248665	-	431	148653608	-	PsycPRwf_1811	-	ATP phosphoribosyltransferase regulatory subunit
1792	 43.93	0	2249531..2249917	+	128	148653609	-	PsycPRwf_1812	-	hypothetical protein
1793	 44.02	0	2249989..2251092	+	367	148653610	-	PsycPRwf_1813	-	magnesium and cobalt transport protein CorA
1794	 41.93	-1	2251189..2251665	-	158	148653611	-	PsycPRwf_1814	-	phosphate-starvation-inducible E
1795	 46.80	0	2251833..2252708	-	291	148653612	-	PsycPRwf_1815	-	methenyltetrahydrofolate cyclohydrolase
1796	 41.59	-1	2253611..2254627	-	338	148653613	-	PsycPRwf_1816	-	fimbrial protein-like protein
1797	 42.76	0	2254617..2257172	-	851	148653614	-	PsycPRwf_1817	-	fimbrial biogenesis outer membrane usher protein
1798	 40.53	-1	2257251..2258000	-	249	148653615	-	PsycPRwf_1818	-	pili assembly chaperone
1799	 44.06	0	2258108..2258629	-	173	148653616	-	PsycPRwf_1819	-	fimbrial protein-like protein
1800	 40.30	-1	2259890..2260822	-	310	148653617	-	PsycPRwf_1820	-	hypothetical protein
1801	 47.80	0	2260943..2262214	-	423	148653618	-	PsycPRwf_1821	-	muramoyltetrapeptide carboxypeptidase
1802	 46.88	0	2262470..2263480	+	336	148653619	-	PsycPRwf_1822	-	delta-aminolevulinic acid dehydratase
1803	 41.90	-1	2263579..2264208	-	209	148653620	-	PsycPRwf_1823	-	OmpW family protein
1804	 47.40	0	2264597..2266636	+	679	148653621	-	PsycPRwf_1824	-	UvrD/REP helicase
1805	 47.27	0	2266858..2268249	+	463	148653622	-	PsycPRwf_1825	-	magnesium transporter
1806	 46.24	0	2268424..2268888	+	154	148653623	dut	PsycPRwf_1826	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1807	 48.04	0	2268964..2270574	+	536	148653624	-	PsycPRwf_1827	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
1808	 48.90	0	2270626..2271537	+	303	148653625	-	PsycPRwf_1828	-	acetylglutamate kinase
1809	 43.72	0	2271673..2272038	-	121	148653626	-	PsycPRwf_1829	-	arsenate reductase and related
1810	 48.23	0	2272301..2274958	+	885	148653627	-	PsycPRwf_1830	-	leucyl-tRNA synthetase
1811	 47.39	0	2274962..2275651	+	229	148653628	-	PsycPRwf_1831	-	hypothetical protein
1812	 47.38	0	2275655..2276722	+	355	148653629	-	PsycPRwf_1832	-	DNA polymerase III, delta subunit
1813	 48.53	0	2276992..2278386	+	464	148653630	-	PsycPRwf_1833	-	RND family efflux transporter MFP subunit
1814	 48.21	0	2278595..2280685	+	696	148653631	-	PsycPRwf_1834	-	ABC transporter related
1815	 45.63	0	2281464..2282252	-	262	148653632	-	PsycPRwf_1835	-	beta-lactamase domain-containing protein
1816	 45.93	0	2282420..2284507	-	695	148653633	-	PsycPRwf_1836	-	catalase
1817	 46.86	0	2284806..2285330	-	174	148653634	-	PsycPRwf_1837	-	hypothetical protein
1818	 50.98	+1	2285569..2286900	-	443	148653635	-	PsycPRwf_1838	-	peptidoglycan-binding LysM
1819	 47.94	0	2287377..2288225	+	282	148653636	thiG	PsycPRwf_1839	-	thiazole synthase
1820	 44.52	0	2288422..2289807	+	461	148653637	-	PsycPRwf_1840	-	acyltransferase ws/dgat/mgat family protein
1821	 46.34	0	2289930..2291390	+	486	148653638	-	PsycPRwf_1841	-	acyltransferase ws/dgat/mgat family protein
1822	 46.86	0	2291393..2291902	-	169	148653639	-	PsycPRwf_1842	-	hypothetical protein
1823	 48.76	0	2292039..2295137	-	1032	148653640	-	PsycPRwf_1843	-	peptidase M16C associated domain-containing protein
1824	 46.99	0	2295297..2295977	-	226	148653641	-	PsycPRwf_1844	-	phosphoglycerate mutase
1825	 49.22	0	2296583..2297608	+	341	148653642	-	PsycPRwf_1845	-	ribokinase-like domain-containing protein
1826	 48.71	0	2297750..2299063	-	437	148653643	-	PsycPRwf_1846	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1827	 47.47	0	2299305..2299955	-	216	148653644	-	PsycPRwf_1847	-	HesB/YadR/YfhF-family protein
1828	 44.94	0	2300337..2301611	+	424	148653645	-	PsycPRwf_1848	-	hypothetical protein
1829	 46.93	0	2301746..2302738	+	330	148653646	-	PsycPRwf_1849	-	transporter DMT superfamily protein
1830	 45.56	0	2302916..2303545	+	209	148653647	-	PsycPRwf_1850	-	glutathione S-transferase domain-containing protein
1831	 49.04	0	2303763..2304851	+	362	148653648	-	PsycPRwf_1851	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
1832	 47.21	0	2304979..2306376	+	465	148653649	-	PsycPRwf_1852	-	putative nicotinate phosphoribosyltransferase
1833	 48.36	0	2306642..2307433	+	263	148653650	-	PsycPRwf_1853	-	GDSL family lipase
1834	 48.41	0	2307498..2307968	-	156	148653651	-	PsycPRwf_1854	-	membrane protein-like protein
1835	 48.35	0	2307961..2309112	-	383	148653652	-	PsycPRwf_1855	-	dihydroorotase-like protein
1836	 48.94	0	2309232..2310320	-	362	148653653	pyrB	PsycPRwf_1856	-	aspartate carbamoyltransferase catalytic subunit
1837	 48.76	0	2310955..2311959	+	334	148653654	-	PsycPRwf_1857	-	fructose-1,6-bisphosphatase
1838	 43.85	0	2312150..2312986	+	278	148653655	-	PsycPRwf_1858	-	tRNA/rRNA methyltransferase (SpoU)
1839	 41.76	-1	2313069..2313875	-	268	148653656	-	PsycPRwf_1859	-	procollagen-proline dioxygenase
1840	 46.26	0	2314125..2315315	-	396	148653657	-	PsycPRwf_1860	-	elongation factor Tu
1841	 43.94	0	2315611..2317740	-	709	148653658	-	PsycPRwf_1861	-	elongation factor G
1842	 47.47	0	2318184..2318657	-	157	148653659	-	PsycPRwf_1862	-	30S ribosomal protein S7
1843	 45.07	0	2318811..2319185	-	124	148653660	rpsL	PsycPRwf_1863	-	30S ribosomal protein S12
1844	 45.61	0	2319783..2320295	+	170	148653661	-	PsycPRwf_1864	-	peptidylprolyl isomerase, FKBP-type
1845	 47.45	0	2320390..2321430	+	346	148653662	-	PsycPRwf_1865	-	aldo/keto reductase
1846	 48.11	0	2321637..2322509	-	290	148653663	-	PsycPRwf_1866	-	phospholipid/glycerol acyltransferase
1847	 47.99	0	2322839..2323657	-	272	148653664	-	PsycPRwf_1867	-	phospholipid/glycerol acyltransferase
1848	 47.58	0	2324245..2325690	+	481	148653665	-	PsycPRwf_1868	-	GTP-binding protein, HSR1-related
1849	 47.85	0	2326095..2326535	+	146	148653666	-	PsycPRwf_1869	-	hypothetical protein
1850	 46.38	0	2326547..2327251	+	234	148653667	-	PsycPRwf_1870	-	LrgB family protein
1851	 43.85	0	2327599..2328444	+	281	148653668	-	PsycPRwf_1871	-	lytic transglycosylase, catalytic
1852	 40.00	-1	2328578..2328817	-	79	148653669	-	PsycPRwf_1872	-	hypothetical protein
1853	 46.75	0	2329112..2330095	-	327	148653670	-	PsycPRwf_1873	-	malate dehydrogenase
1854	 47.15	0	2330561..2332681	-	706	148653671	-	PsycPRwf_1874	-	lytic transglycosylase, catalytic
1855	 45.62	0	2333189..2334661	+	490	148653672	-	PsycPRwf_1875	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1856	 46.81	0	2334747..2335421	-	224	148653673	-	PsycPRwf_1876	-	lysine exporter protein LysE/YggA
1857	 47.16	0	2335503..2336717	-	404	148653674	-	PsycPRwf_1877	-	acetylornithine deacetylase
1858	 48.10	0	2336905..2337561	-	218	148653675	-	PsycPRwf_1878	-	hypothetical protein
1859	 47.89	0	2337798..2338271	+	157	148653676	-	PsycPRwf_1879	-	hypothetical protein
1860	 44.96	0	2338441..2338956	+	171	148653677	-	PsycPRwf_1880	-	hypothetical protein
1861	 46.44	0	2338963..2339412	-	149	148653678	-	PsycPRwf_1881	-	hypothetical protein
1862	 47.20	0	2339811..2341469	+	552	148653679	-	PsycPRwf_1882	-	NAD+ synthetase
1863	 49.37	+1	2341576..2342292	-	238	148653680	-	PsycPRwf_1883	-	alanine racemase domain-containing protein
1864	 49.26	0	2342450..2343529	+	359	148653681	-	PsycPRwf_1884	-	twitching motility protein
1865	 41.20	-1	2343661..2344092	-	143	148653682	-	PsycPRwf_1885	-	ferric uptake regulator family protein
1866	 41.87	-1	2344377..2344751	+	124	148653683	-	PsycPRwf_1886	-	SmpA/OmlA domain-containing protein
1867	 47.79	0	2344953..2345291	-	112	148653684	-	PsycPRwf_1887	-	hypothetical protein
1868	 49.29	0	2345288..2346409	-	373	148653685	-	PsycPRwf_1888	-	hypothetical protein
1869	 46.40	0	2346657..2347322	-	221	148653686	-	PsycPRwf_1889	-	cytochrome c, class I
1870	 47.25	0	2347738..2348046	-	102	148653687	-	PsycPRwf_1890	-	hypothetical protein
1871	 46.07	0	2348761..2349459	+	232	148653688	-	PsycPRwf_1891	-	GTP-binding protein, HSR1-related
1872	 48.86	0	2349728..2352568	+	946	148653689	ileS	PsycPRwf_1892	-	isoleucyl-tRNA synthetase
1873	 48.44	0	2352561..2353169	+	202	148653690	-	PsycPRwf_1893	-	lipoprotein signal peptidase
1874	 46.67	0	2353276..2353680	-	134	148653691	-	PsycPRwf_1894	-	hypothetical protein
1875	 48.74	0	2353979..2355718	+	579	148653692	-	PsycPRwf_1895	-	FAD dependent oxidoreductase
1876	 47.47	0	2355798..2356490	-	230	148653693	-	PsycPRwf_1896	-	hypothetical protein
1877	 46.17	0	2356730..2357695	+	321	148653694	-	PsycPRwf_1897	-	alpha/beta hydrolase-like protein
1878	 46.10	0	2357931..2358956	+	341	148653695	-	PsycPRwf_1898	-	hypothetical protein
1879	 49.46	+1	2359088..2360284	-	398	148653696	-	PsycPRwf_1899	-	Pyrrolo-quinoline quinone
1880	 49.46	+1	2360440..2361276	-	278	148653697	-	PsycPRwf_1900	-	hypothetical protein
1881	 48.89	0	2361364..2362674	-	436	148653698	hisS	PsycPRwf_1901	-	histidyl-tRNA synthetase
1882	 47.69	0	2362779..2363927	-	382	148653699	-	PsycPRwf_1902	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
1883	 44.68	0	2364035..2364880	-	281	148653700	-	PsycPRwf_1903	-	hypothetical protein
1884	 49.57	+1	2364985..2365803	-	272	148653701	-	PsycPRwf_1904	-	type IV pilus biogenesis/stability protein PilW
1885	 49.17	0	2366004..2367215	-	403	148653702	-	PsycPRwf_1905	-	radical SAM protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.