IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1745	 49.16	0	2185597..2186367	+	256	148653562	-	PsycPRwf_1765	-	extradiol ring-cleavage dioxygenase III subunit B
1746	 49.94	+1	2186488..2187258	+	256	148653563	-	PsycPRwf_1766	-	exsB protein
1747	 42.24	-1	2187529..2187876	+	115	148653564	-	PsycPRwf_1767	-	hypothetical protein
1748	 42.02	-1	2188141..2188635	+	164	148653565	-	PsycPRwf_1768	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1749	 45.67	0	2188752..2190299	+	515	148653566	-	PsycPRwf_1769	-	dihydrolipoamide dehydrogenase
1750	 48.24	0	2190510..2191730	+	406	148653567	-	PsycPRwf_1770	-	MscS mechanosensitive ion channel
1751	 46.29	0	2191977..2194400	+	807	148653568	-	PsycPRwf_1771	-	23S rRNA m(2)G2445 methyltransferase
1752	 45.82	0	2194521..2195465	-	314	148653569	-	PsycPRwf_1772	-	HemK family modification methylase
1753	 45.43	0	2195483..2197375	-	630	148653570	-	PsycPRwf_1773	-	major facilitator transporter
1754	 47.63	0	2197692..2198621	+	309	148653571	-	PsycPRwf_1774	-	transcriptional regulator CysB-like protein
1755	 49.08	0	2198942..2201506	+	854	148653572	-	PsycPRwf_1775	-	Pyrrolo-quinoline quinone
1756	 51.00	+1	2201822..2202823	+	333	148653573	-	PsycPRwf_1776	-	luciferase family protein
1757	 41.08	-1	2202872..2204020	-	382	148653574	-	PsycPRwf_1777	-	IS605 family transposase OrfB
1758	 41.95	-1	2204196..2204543	-	115	148653575	-	PsycPRwf_1778	-	hypothetical protein
1759	 45.75	0	2204691..2204996	-	101	148653576	-	PsycPRwf_1779	-	hypothetical protein
1760	 46.42	0	2205172..2206080	-	302	148653577	-	PsycPRwf_1780	-	auxin efflux carrier
1761	 49.14	0	2206303..2208231	-	642	148653578	-	PsycPRwf_1781	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1762	 47.52	0	2208729..2210321	+	530	148653579	-	PsycPRwf_1782	-	peptidase M16 domain-containing protein
1763	 49.44	+1	2210420..2211934	+	504	148653580	-	PsycPRwf_1783	-	peptidase M16 domain-containing protein
1764	 45.03	0	2212071..2212643	-	190	148653581	-	PsycPRwf_1784	-	hypothetical protein
1765	 48.00	0	2213000..2213824	-	274	148653582	-	PsycPRwf_1785	-	hypothetical protein
1766	 48.38	0	2214236..2215378	+	380	148653583	-	PsycPRwf_1786	-	rod shape-determining protein RodA
1767	 47.52	0	2215553..2216821	+	422	148653584	-	PsycPRwf_1787	-	radical SAM domain-containing protein
1768	 46.24	0	2216856..2217707	+	283	148653585	-	PsycPRwf_1788	-	hypothetical protein
1769	 45.51	0	2217961..2219151	+	396	148653586	-	PsycPRwf_1789	-	glycosyl transferase, group 1
1770	 46.56	0	2219563..2220726	-	387	148653587	-	PsycPRwf_1790	-	endonuclease/exonuclease/phosphatase
1771	 49.52	+1	2221096..2222238	+	380	148653588	-	PsycPRwf_1791	-	aspartate-semialdehyde dehydrogenase
1772	 44.79	0	2222358..2223719	-	453	148653589	-	PsycPRwf_1792	-	sodium:neurotransmitter symporter
1773	 44.74	0	2223962..2224741	-	259	148653590	-	PsycPRwf_1793	-	UDP-N-acetylglucosamine acyltransferase
1774	 45.34	0	2224930..2225487	-	185	148653591	-	PsycPRwf_1794	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1775	 51.35	+1	2225537..2226607	-	356	148653592	-	PsycPRwf_1795	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
1776	 44.53	0	2226757..2229213	-	818	148653593	-	PsycPRwf_1796	-	surface antigen (D15)
1777	 47.85	0	2229349..2230788	-	479	148653594	-	PsycPRwf_1797	-	putative membrane-associated zinc metalloprotease
1778	 47.82	0	2230776..2232011	-	411	148653595	-	PsycPRwf_1798	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1779	 49.15	0	2232146..2232973	-	275	148653596	-	PsycPRwf_1799	-	phosphatidate cytidylyltransferase
1780	 48.70	0	2233095..2233901	-	268	148653597	-	PsycPRwf_1800	-	undecaprenyl diphosphate synthase
1781	 46.49	0	2234166..2234720	-	184	148653598	-	PsycPRwf_1801	-	ribosome recycling factor
1782	 46.42	0	2234860..2235585	-	241	148653599	-	PsycPRwf_1802	-	uridylate kinase
1783	 47.30	0	2235884..2237458	-	524	148653600	-	PsycPRwf_1803	-	MiaB-like tRNA modifying enzyme YliG
1784	 47.00	0	2237914..2239113	+	399	148653601	-	PsycPRwf_1804	-	signal transduction histidine kinase, nitrogen specific, NtrB
1785	 49.47	+1	2239205..2241013	+	602	148653602	-	PsycPRwf_1805	-	nitrogen metabolism transcriptional regulator, NtrC, Fis family
1786	 45.09	0	2242085..2243122	-	345	148653603	-	PsycPRwf_1806	-	protein kinase
1787	 45.23	0	2243272..2244162	+	296	148653604	-	PsycPRwf_1807	-	hypothetical protein
1788	 47.61	0	2244240..2245304	-	354	148653605	-	PsycPRwf_1808	-	ribonuclease Z
1789	 47.76	0	2245313..2245804	-	163	148653606	-	PsycPRwf_1809	-	dehydratase
1790	 46.67	0	2245959..2247248	-	429	148653607	-	PsycPRwf_1810	-	adenylosuccinate synthetase
1791	 44.29	0	2247370..2248665	-	431	148653608	-	PsycPRwf_1811	-	ATP phosphoribosyltransferase regulatory subunit
1792	 43.93	0	2249531..2249917	+	128	148653609	-	PsycPRwf_1812	-	hypothetical protein
1793	 44.02	0	2249989..2251092	+	367	148653610	-	PsycPRwf_1813	-	magnesium and cobalt transport protein CorA
1794	 41.93	-1	2251189..2251665	-	158	148653611	-	PsycPRwf_1814	-	phosphate-starvation-inducible E
1795	 46.80	0	2251833..2252708	-	291	148653612	-	PsycPRwf_1815	-	methenyltetrahydrofolate cyclohydrolase
1796	 41.59	-1	2253611..2254627	-	338	148653613	-	PsycPRwf_1816	-	fimbrial protein-like protein
1797	 42.76	0	2254617..2257172	-	851	148653614	-	PsycPRwf_1817	-	fimbrial biogenesis outer membrane usher protein
1798	 40.53	-1	2257251..2258000	-	249	148653615	-	PsycPRwf_1818	-	pili assembly chaperone
1799	 44.06	0	2258108..2258629	-	173	148653616	-	PsycPRwf_1819	-	fimbrial protein-like protein
1800	 40.30	-1	2259890..2260822	-	310	148653617	-	PsycPRwf_1820	-	hypothetical protein
1801	 47.80	0	2260943..2262214	-	423	148653618	-	PsycPRwf_1821	-	muramoyltetrapeptide carboxypeptidase
1802	 46.88	0	2262470..2263480	+	336	148653619	-	PsycPRwf_1822	-	delta-aminolevulinic acid dehydratase
1803	 41.90	-1	2263579..2264208	-	209	148653620	-	PsycPRwf_1823	-	OmpW family protein
1804	 47.40	0	2264597..2266636	+	679	148653621	-	PsycPRwf_1824	-	UvrD/REP helicase
1805	 47.27	0	2266858..2268249	+	463	148653622	-	PsycPRwf_1825	-	magnesium transporter
1806	 46.24	0	2268424..2268888	+	154	148653623	dut	PsycPRwf_1826	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1807	 48.04	0	2268964..2270574	+	536	148653624	-	PsycPRwf_1827	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
1808	 48.90	0	2270626..2271537	+	303	148653625	-	PsycPRwf_1828	-	acetylglutamate kinase
1809	 43.72	0	2271673..2272038	-	121	148653626	-	PsycPRwf_1829	-	arsenate reductase and related
1810	 48.23	0	2272301..2274958	+	885	148653627	-	PsycPRwf_1830	-	leucyl-tRNA synthetase
1811	 47.39	0	2274962..2275651	+	229	148653628	-	PsycPRwf_1831	-	hypothetical protein
1812	 47.38	0	2275655..2276722	+	355	148653629	-	PsycPRwf_1832	-	DNA polymerase III, delta subunit
1813	 48.53	0	2276992..2278386	+	464	148653630	-	PsycPRwf_1833	-	RND family efflux transporter MFP subunit
1814	 48.21	0	2278595..2280685	+	696	148653631	-	PsycPRwf_1834	-	ABC transporter related
1815	 45.63	0	2281464..2282252	-	262	148653632	-	PsycPRwf_1835	-	beta-lactamase domain-containing protein
1816	 45.93	0	2282420..2284507	-	695	148653633	-	PsycPRwf_1836	-	catalase
1817	 46.86	0	2284806..2285330	-	174	148653634	-	PsycPRwf_1837	-	hypothetical protein
1818	 50.98	+1	2285569..2286900	-	443	148653635	-	PsycPRwf_1838	-	peptidoglycan-binding LysM
1819	 47.94	0	2287377..2288225	+	282	148653636	thiG	PsycPRwf_1839	-	thiazole synthase
1820	 44.52	0	2288422..2289807	+	461	148653637	-	PsycPRwf_1840	-	acyltransferase ws/dgat/mgat family protein
1821	 46.34	0	2289930..2291390	+	486	148653638	-	PsycPRwf_1841	-	acyltransferase ws/dgat/mgat family protein
1822	 46.86	0	2291393..2291902	-	169	148653639	-	PsycPRwf_1842	-	hypothetical protein
1823	 48.76	0	2292039..2295137	-	1032	148653640	-	PsycPRwf_1843	-	peptidase M16C associated domain-containing protein
1824	 46.99	0	2295297..2295977	-	226	148653641	-	PsycPRwf_1844	-	phosphoglycerate mutase
1825	 49.22	0	2296583..2297608	+	341	148653642	-	PsycPRwf_1845	-	ribokinase-like domain-containing protein
1826	 48.71	0	2297750..2299063	-	437	148653643	-	PsycPRwf_1846	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1827	 47.47	0	2299305..2299955	-	216	148653644	-	PsycPRwf_1847	-	HesB/YadR/YfhF-family protein
1828	 44.94	0	2300337..2301611	+	424	148653645	-	PsycPRwf_1848	-	hypothetical protein
1829	 46.93	0	2301746..2302738	+	330	148653646	-	PsycPRwf_1849	-	transporter DMT superfamily protein
1830	 45.56	0	2302916..2303545	+	209	148653647	-	PsycPRwf_1850	-	glutathione S-transferase domain-containing protein
1831	 49.04	0	2303763..2304851	+	362	148653648	-	PsycPRwf_1851	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
1832	 47.21	0	2304979..2306376	+	465	148653649	-	PsycPRwf_1852	-	putative nicotinate phosphoribosyltransferase
1833	 48.36	0	2306642..2307433	+	263	148653650	-	PsycPRwf_1853	-	GDSL family lipase
1834	 48.41	0	2307498..2307968	-	156	148653651	-	PsycPRwf_1854	-	membrane protein-like protein
1835	 48.35	0	2307961..2309112	-	383	148653652	-	PsycPRwf_1855	-	dihydroorotase-like protein
1836	 48.94	0	2309232..2310320	-	362	148653653	pyrB	PsycPRwf_1856	-	aspartate carbamoyltransferase catalytic subunit
1837	 48.76	0	2310955..2311959	+	334	148653654	-	PsycPRwf_1857	-	fructose-1,6-bisphosphatase
1838	 43.85	0	2312150..2312986	+	278	148653655	-	PsycPRwf_1858	-	tRNA/rRNA methyltransferase (SpoU)
1839	 41.76	-1	2313069..2313875	-	268	148653656	-	PsycPRwf_1859	-	procollagen-proline dioxygenase
1840	 46.26	0	2314125..2315315	-	396	148653657	-	PsycPRwf_1860	-	elongation factor Tu
1841	 43.94	0	2315611..2317740	-	709	148653658	-	PsycPRwf_1861	-	elongation factor G
1842	 47.47	0	2318184..2318657	-	157	148653659	-	PsycPRwf_1862	-	30S ribosomal protein S7
1843	 45.07	0	2318811..2319185	-	124	148653660	rpsL	PsycPRwf_1863	-	30S ribosomal protein S12
1844	 45.61	0	2319783..2320295	+	170	148653661	-	PsycPRwf_1864	-	peptidylprolyl isomerase, FKBP-type
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.