IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.93   STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1660	 41.27	-1	2077985..2078362	+	125	148653477	-	PsycPRwf_1680	-	glutaredoxin 2
1661	 45.34	0	2078685..2080442	+	585	148653478	-	PsycPRwf_1681	-	L-lactate transport
1662	 49.01	0	2080514..2081725	+	403	148653479	-	PsycPRwf_1682	-	FMN-dependent alpha-hydroxy acid dehydrogenase
1663	 44.31	0	2081918..2082664	+	248	148653480	-	PsycPRwf_1683	-	rhomboid family protein
1664	 47.22	0	2082749..2083540	+	263	148653481	-	PsycPRwf_1684	-	MltA-interacting MipA family protein
1665	 42.41	-1	2083598..2084401	+	267	148653482	-	PsycPRwf_1685	-	hypothetical protein
1666	 45.09	0	2084514..2085338	-	274	148653483	-	PsycPRwf_1686	-	oxidoreductase FAD/NAD(P)-binding subunit
1667	 43.50	0	2085486..2086961	-	491	148653484	-	PsycPRwf_1687	-	proton-translocating NADH-quinone oxidoreductase, chain N
1668	 46.48	0	2086961..2088694	-	577	148653485	-	PsycPRwf_1688	-	NADH dehydrogenase subunit M
1669	 45.49	0	2088696..2090570	-	624	148653486	-	PsycPRwf_1689	-	NADH dehydrogenase subunit L
1670	 46.13	0	2090575..2090949	-	124	148653487	-	PsycPRwf_1690	-	NADH-ubiquinone oxidoreductase, chain 4L
1671	 44.96	0	2091033..2091737	-	234	148653488	-	PsycPRwf_1691	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
1672	 46.99	0	2091734..2092282	-	182	148653489	-	PsycPRwf_1692	-	NADH dehydrogenase subunit I
1673	 45.46	0	2092445..2093491	-	348	148653490	-	PsycPRwf_1693	-	NADH dehydrogenase subunit H
1674	 46.65	0	2093493..2096525	-	1010	148653491	-	PsycPRwf_1694	-	NADH dehydrogenase subunit G
1675	 48.76	0	2096542..2098155	-	537	148653492	-	PsycPRwf_1695	-	NADH-quinone oxidoreductase, F subunit
1676	 44.64	0	2098152..2098664	-	170	148653493	-	PsycPRwf_1696	-	NADH dehydrogenase subunit E
1677	 47.32	0	2098754..2100541	-	595	148653494	-	PsycPRwf_1697	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1678	 48.88	0	2100663..2101331	-	222	148653495	-	PsycPRwf_1698	-	NADH dehydrogenase subunit B
1679	 44.65	0	2101342..2101977	-	211	148653496	-	PsycPRwf_1699	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1680	 44.10	0	2102358..2102933	-	191	148653497	dcd	PsycPRwf_1700	-	deoxycytidine triphosphate deaminase
1681	 47.95	0	2103247..2104464	-	405	148653498	-	PsycPRwf_1701	-	hypothetical protein
1682	 47.47	0	2104528..2105814	-	428	148653499	-	PsycPRwf_1702	-	ATPase involved in chromosome partitioning-like protein
1683	 47.09	0	2106002..2107339	-	445	148653500	-	PsycPRwf_1703	-	magnesium transporter
1684	 46.24	0	2107668..2108465	-	265	148653501	-	PsycPRwf_1704	-	3-hydroxybutyrate dehydrogenase
1685	 49.21	0	2108537..2109166	-	209	148653502	-	PsycPRwf_1705	-	3-oxoacid CoA-transferase, B subunit
1686	 45.87	0	2109203..2109904	-	233	148653503	-	PsycPRwf_1706	-	3-oxoacid CoA-transferase, A subunit
1687	 44.82	0	2110362..2111771	+	469	148653504	-	PsycPRwf_1707	-	citrate transporter
1688	 47.35	0	2111885..2113225	-	446	148653505	-	PsycPRwf_1708	-	short chain fatty acid transporter
1689	 44.79	0	2113541..2115634	+	697	148653506	metG	PsycPRwf_1709	-	methionyl-tRNA synthetase
1690	 41.37	-1	2115680..2116786	-	368	148653507	-	PsycPRwf_1710	-	IS605 family transposase OrfB
1691	 48.70	0	2117035..2118147	+	370	148653508	-	PsycPRwf_1711	-	hypothetical protein
1692	 49.03	0	2118258..2119289	+	343	148653509	-	PsycPRwf_1712	-	hypothetical protein
1693	 47.11	0	2119641..2120540	+	299	148653510	-	PsycPRwf_1713	-	inner-membrane translocator
1694	 47.55	0	2120593..2121387	+	264	148653511	-	PsycPRwf_1714	-	ABC transporter related
1695	 46.02	0	2121493..2122761	-	422	148653512	-	PsycPRwf_1715	-	saccharopine dehydrogenase
1696	 42.89	0	2123098..2124237	-	379	148653513	-	PsycPRwf_1716	-	carboxynorspermidine decarboxylase
1697	 44.44	0	2124358..2124915	-	185	148653514	-	PsycPRwf_1717	-	hypothetical protein
1698	 49.08	0	2125004..2126248	-	414	148653515	-	PsycPRwf_1718	-	hypothetical protein
1699	 43.99	0	2126321..2127193	-	290	148653516	-	PsycPRwf_1719	-	ATPase central domain-containing protein
1700	 49.07	0	2127642..2128232	-	196	148653517	-	PsycPRwf_1720	-	hypothetical protein
1701	 42.06	-1	2128495..2128815	-	106	148653518	-	PsycPRwf_1721	-	hypothetical protein
1702	 46.60	0	2129772..2130917	+	381	148653519	gcvT	PsycPRwf_1722	-	glycine cleavage system aminomethyltransferase T
1703	 47.77	0	2131148..2131528	+	126	148653520	-	PsycPRwf_1723	-	glycine cleavage system protein H
1704	 46.24	0	2131718..2132515	+	265	148653521	-	PsycPRwf_1724	-	nitroreductase
1705	 48.76	0	2132624..2135527	+	967	148653522	-	PsycPRwf_1725	-	glycine dehydrogenase
1706	 47.20	0	2135714..2136463	+	249	148653523	-	PsycPRwf_1726	-	hypothetical protein
1707	 46.45	0	2136460..2137755	-	431	148653524	-	PsycPRwf_1727	-	3'-5' exonuclease
1708	 49.66	+1	2137815..2138402	-	195	148653525	-	PsycPRwf_1728	-	recombination protein RecR
1709	 45.35	0	2138598..2138930	-	110	148653526	-	PsycPRwf_1729	-	hypothetical protein
1710	 49.73	+1	2139142..2140446	-	434	148653527	-	PsycPRwf_1730	-	O-succinylhomoserine sulfhydrylase
1711	 50.97	+1	2140622..2141551	+	309	148653528	-	PsycPRwf_1731	-	6-phosphogluconate dehydrogenase, NAD-binding
1712	 43.87	0	2141950..2143581	+	543	148653529	-	PsycPRwf_1732	-	phospholipase D/transphosphatidylase
1713	 43.50	0	2143671..2144978	+	435	148653530	-	PsycPRwf_1733	-	major facilitator transporter
1714	 49.19	0	2145115..2146161	+	348	148653531	-	PsycPRwf_1734	-	tRNA-dihydrouridine synthase A
1715	 47.99	0	2146264..2147082	-	272	148653532	-	PsycPRwf_1735	-	abortive infection protein
1716	 47.17	0	2147092..2147973	-	293	148653533	-	PsycPRwf_1736	-	hypothetical protein
1717	 45.54	0	2147974..2149038	-	354	148653534	-	PsycPRwf_1737	-	signal peptide peptidase SppA, 36K type
1718	 48.17	0	2149353..2152460	-	1035	148653535	-	PsycPRwf_1738	-	ComEC/Rec2-related protein
1719	 49.20	0	2152551..2153237	-	228	148653536	-	PsycPRwf_1739	-	lipoprotein releasing system, ATP-binding protein
1720	 45.71	0	2153311..2154546	-	411	148653537	-	PsycPRwf_1740	-	LolC/E family lipoprotein releasing system, transmembrane protein
1721	 44.58	0	2154955..2155923	+	322	148653538	-	PsycPRwf_1741	-	hypothetical protein
1722	 41.61	-1	2156283..2156765	+	160	148653539	-	PsycPRwf_1742	-	hypothetical protein
1723	 41.28	-1	2156905..2157294	-	129	148653540	-	PsycPRwf_1743	-	hypothetical protein
1724	 43.19	0	2157964..2159454	+	496	148653541	-	PsycPRwf_1744	-	cytochrome c oxidase, cbb3-type, subunit I
1725	 46.79	0	2159480..2160118	+	212	148653542	-	PsycPRwf_1745	-	cytochrome c oxidase, cbb3-type, subunit II
1726	 40.98	-1	2160118..2160300	+	60	148653543	-	PsycPRwf_1746	-	Cbb3-type cytochrome oxidase component
1727	 45.13	0	2160297..2161415	+	372	148653544	-	PsycPRwf_1747	-	cytochrome c, class I
1728	 44.07	0	2161802..2163208	+	468	148653545	-	PsycPRwf_1748	-	cytochrome c oxidase cbb3 type, accessory protein FixG
1729	 42.18	-1	2163349..2163936	+	195	148653546	-	PsycPRwf_1749	-	hypothetical protein
1730	 43.18	0	2164052..2165158	-	368	148653547	-	PsycPRwf_1750	-	PP-loop domain-containing protein
1731	 45.20	0	2165446..2166237	+	263	148653548	-	PsycPRwf_1751	-	hypothetical protein
1732	 47.75	0	2166212..2166967	-	251	148653549	-	PsycPRwf_1752	-	nucleotidyl transferase
1733	 46.23	0	2167027..2168181	-	384	148653550	-	PsycPRwf_1753	-	aminoglycoside phosphotransferase
1734	 47.64	0	2168570..2171965	+	1131	148653551	-	PsycPRwf_1754	-	organic solvent tolerance protein
1735	 47.87	0	2172193..2173575	+	460	148653552	-	PsycPRwf_1755	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1736	 46.28	0	2173752..2174570	-	272	148653553	-	PsycPRwf_1756	-	peptidase M23B
1737	 39.87	-1	2175310..2175768	+	152	148653554	-	PsycPRwf_1757	-	hypothetical protein
1738	 45.97	0	2176294..2177535	+	413	148653555	-	PsycPRwf_1758	-	Serine-type D-Ala-D-Ala carboxypeptidase
1739	 46.84	0	2177613..2179034	-	473	148653556	engA	PsycPRwf_1759	-	GTP-binding protein EngA
1740	 45.76	0	2179505..2180212	+	235	148653557	-	PsycPRwf_1760	-	hypothetical protein
1741	 47.65	0	2180373..2182223	+	616	148653558	-	PsycPRwf_1761	-	potassium efflux system protein
1742	 47.62	0	2182258..2183223	-	321	148653559	-	PsycPRwf_1762	-	hypothetical protein
1743	 49.69	+1	2183400..2184200	+	266	148653560	-	PsycPRwf_1763	-	tRNA (guanine-N(7)-)-methyltransferase
1744	 47.85	0	2184913..2185401	+	162	148653561	-	PsycPRwf_1764	-	hypothetical protein
1745	 49.16	0	2185597..2186367	+	256	148653562	-	PsycPRwf_1765	-	extradiol ring-cleavage dioxygenase III subunit B
1746	 49.94	+1	2186488..2187258	+	256	148653563	-	PsycPRwf_1766	-	exsB protein
1747	 42.24	-1	2187529..2187876	+	115	148653564	-	PsycPRwf_1767	-	hypothetical protein
1748	 42.02	-1	2188141..2188635	+	164	148653565	-	PsycPRwf_1768	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1749	 45.67	0	2188752..2190299	+	515	148653566	-	PsycPRwf_1769	-	dihydrolipoamide dehydrogenase
1750	 48.24	0	2190510..2191730	+	406	148653567	-	PsycPRwf_1770	-	MscS mechanosensitive ion channel
1751	 46.29	0	2191977..2194400	+	807	148653568	-	PsycPRwf_1771	-	23S rRNA m(2)G2445 methyltransferase
1752	 45.82	0	2194521..2195465	-	314	148653569	-	PsycPRwf_1772	-	HemK family modification methylase
1753	 45.43	0	2195483..2197375	-	630	148653570	-	PsycPRwf_1773	-	major facilitator transporter
1754	 47.63	0	2197692..2198621	+	309	148653571	-	PsycPRwf_1774	-	transcriptional regulator CysB-like protein
1755	 49.08	0	2198942..2201506	+	854	148653572	-	PsycPRwf_1775	-	Pyrrolo-quinoline quinone
1756	 51.00	+1	2201822..2202823	+	333	148653573	-	PsycPRwf_1776	-	luciferase family protein
1757	 41.08	-1	2202872..2204020	-	382	148653574	-	PsycPRwf_1777	-	IS605 family transposase OrfB
1758	 41.95	-1	2204196..2204543	-	115	148653575	-	PsycPRwf_1778	-	hypothetical protein
1759	 45.75	0	2204691..2204996	-	101	148653576	-	PsycPRwf_1779	-	hypothetical protein
45.93	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.