IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1549	 52.19	+1	1924916..1925806	+	296	148653366	-	PsycPRwf_1568	-	TonB family protein
1550	 48.74	0	1925907..1927256	+	449	148653367	-	PsycPRwf_1569	-	WD40 domain-containing protein
1551	 52.02	+1	1927630..1928271	-	213	148653368	-	PsycPRwf_1570	-	NADPH-dependent FMN reductase
1552	 48.99	0	1928366..1929457	-	363	148653369	-	PsycPRwf_1571	-	hypothetical protein
1553	 49.88	+1	1929617..1930879	-	420	148653370	-	PsycPRwf_1572	-	RluA family pseudouridine synthase
1554	 47.46	0	1931164..1932345	+	393	148653371	-	PsycPRwf_1573	-	DNA uptake lipoprotein-like protein
1555	 48.11	0	1932555..1934672	+	705	148653372	-	PsycPRwf_1574	-	DNA primase
1556	 46.74	0	1935099..1936970	+	623	148653373	-	PsycPRwf_1575	-	RNA polymerase, sigma 70 subunit, RpoD
1557	 41.52	-1	1937168..1937509	+	113	148653374	-	PsycPRwf_1576	-	hypothetical protein
1558	 46.55	0	1938073..1940349	+	758	148653375	-	PsycPRwf_1577	-	ribonucleotide-diphosphate reductase subunit alpha
1559	 43.03	0	1940551..1941684	+	377	148653376	nrdB	PsycPRwf_1578	-	ribonucleotide-diphosphate reductase subunit beta
1560	 44.96	0	1941768..1942025	+	85	148653377	-	PsycPRwf_1579	-	ferredoxin
1561	 48.50	0	1942145..1943476	-	443	148653378	-	PsycPRwf_1580	-	2-alkenal reductase
1562	 48.45	0	1943786..1944592	+	268	148653379	-	PsycPRwf_1581	-	hypothetical protein
1563	 48.09	0	1945742..1946974	+	410	148653380	-	PsycPRwf_1582	-	lytic transglycosylase, catalytic
1564	 48.52	0	1947065..1950304	-	1079	148653381	-	PsycPRwf_1583	-	lytic transglycosylase, catalytic
1565	 44.92	0	1950440..1950931	-	163	148653382	-	PsycPRwf_1584	-	hypothetical protein
1566	 43.67	0	1951224..1952297	-	357	148653383	-	PsycPRwf_1585	-	hypothetical protein
1567	 43.33	0	1952523..1952822	-	99	148653384	-	PsycPRwf_1586	-	histone family protein DNA-binding protein
1568	 44.05	0	1953206..1954885	-	559	148653385	rpsA	PsycPRwf_1587	-	30S ribosomal protein S1
1569	 47.93	0	1955135..1955833	-	232	148653386	-	PsycPRwf_1588	-	cytidylate kinase
1570	 50.79	+1	1956224..1956796	-	190	148653387	-	PsycPRwf_1589	-	CMP/dCMP deaminase, zinc-binding
1571	 44.69	0	1956912..1957721	-	269	148653388	-	PsycPRwf_1590	-	uracil-DNA glycosylase
1572	 45.34	0	1957893..1960457	-	854	148653389	-	PsycPRwf_1591	-	ATP-dependent Clp protease, ATP-binding subunit clpA
1573	 33.78	-2	1960567..1960791	+	74	148653390	-	PsycPRwf_1592	-	hypothetical protein
1574	 43.49	0	1960879..1961823	-	314	148653391	-	PsycPRwf_1593	-	auxin efflux carrier
1575	 48.40	0	1961845..1963344	-	499	148653392	-	PsycPRwf_1594	-	thiamine pyrophosphate binding domain-containing protein
1576	 47.74	0	1963927..1965738	+	603	148653393	-	PsycPRwf_1595	-	pyruvate oxidase
1577	 43.97	0	1965922..1966344	-	140	148653394	-	PsycPRwf_1596	-	ATP-dependent Clp protease adaptor protein ClpS
1578	 45.11	0	1966383..1967189	-	268	148653395	-	PsycPRwf_1597	-	hypothetical protein
1579	 47.00	0	1967533..1968600	-	355	148653396	-	PsycPRwf_1598	-	N-acetyl-gamma-glutamyl-phosphate reductase
1580	 46.43	0	1968809..1969915	-	368	148653397	-	PsycPRwf_1599	-	uroporphyrinogen decarboxylase
1581	 46.96	0	1970059..1971276	-	405	148653398	-	PsycPRwf_1600	-	gamma-glutamyl kinase
1582	 49.13	0	1971426..1972634	-	402	148653399	obgE	PsycPRwf_1601	-	GTPase ObgE
1583	 44.49	0	1972957..1974399	-	480	148653400	-	PsycPRwf_1602	-	glyceraldehyde-3-phosphate dehydrogenase
1584	 45.20	0	1974757..1975422	-	221	148653401	-	PsycPRwf_1603	-	Lipocalin family protein
1585	 46.94	0	1975693..1976802	-	369	148653402	-	PsycPRwf_1604	-	NUDIX hydrolase
1586	 44.85	0	1977042..1977206	+	54	148653403	-	PsycPRwf_1605	-	hypothetical protein
1587	 47.24	0	1977335..1982656	-	1773	148653404	-	PsycPRwf_1606	-	hypothetical protein
1588	 48.14	0	1982958..1986299	-	1113	148653405	-	PsycPRwf_1607	-	surface antigen (D15)
1589	 41.36	-1	1986547..1987866	+	439	148653406	-	PsycPRwf_1608	-	major facilitator transporter
1590	 41.15	-1	1988000..1988191	-	63	148653407	-	PsycPRwf_1609	-	hypothetical protein
1591	 47.23	0	1988720..1990360	+	546	148653408	-	PsycPRwf_1610	-	hypothetical protein
1592	 47.79	0	1990599..1993310	+	903	148653409	-	PsycPRwf_1611	-	alanyl-tRNA synthetase
1593	 46.26	0	1993766..1995049	+	427	148653410	-	PsycPRwf_1612	-	aspartate kinase
1594	 42.28	-1	1995520..1995765	+	81	148653411	-	PsycPRwf_1613	-	carbon storage regulator, CsrA
1595	 42.67	0	1995895..1996269	+	124	148653412	-	PsycPRwf_1614	-	HopJ type III effector protein
1596	 41.67	-1	1996663..1997946	+	427	148653413	-	PsycPRwf_1615	-	transposase, IS4 family protein
1597	 48.87	0	1998065..1998373	-	102	148653414	-	PsycPRwf_1616	-	hypothetical protein
1598	 47.21	0	1998422..1999444	-	340	148653415	ppnK	PsycPRwf_1617	-	inorganic polyphosphate/ATP-NAD kinase
1599	 45.54	0	1999978..2000706	+	242	148653416	-	PsycPRwf_1618	-	hypothetical protein
1600	 49.45	+1	2000832..2003729	-	965	148653417	-	PsycPRwf_1619	-	heavy metal translocating P-type ATPase
1601	 47.54	0	2003947..2006592	+	881	148653418	-	PsycPRwf_1620	-	penicillin-binding protein 1B
1602	 51.77	+1	2006623..2007528	+	301	148653419	-	PsycPRwf_1621	-	hypothetical protein
1603	 48.81	0	2007599..2008522	+	307	148653420	-	PsycPRwf_1622	-	ribosomal protein L11 methyltransferase
1604	 46.20	0	2008625..2008966	+	113	148653421	-	PsycPRwf_1623	-	Fis family transcriptional regulator
1605	 48.19	0	2009136..2010710	+	524	148653422	-	PsycPRwf_1624	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1606	 45.71	0	2010835..2012709	-	624	148653423	-	PsycPRwf_1625	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1607	 40.66	-1	2012852..2013124	-	90	148653424	-	PsycPRwf_1626	-	histone family protein DNA-binding protein
1608	 44.03	0	2013696..2014340	+	214	148653425	-	PsycPRwf_1627	-	hypothetical protein
1609	 42.72	0	2014956..2015477	+	173	148653426	-	PsycPRwf_1628	-	BadM/Rrf2 family transcriptional regulator
1610	 46.13	0	2015474..2016700	+	408	148653427	-	PsycPRwf_1629	-	cysteine desulfurase IscS
1611	 44.78	0	2016824..2017216	+	130	148653428	-	PsycPRwf_1630	-	scaffold protein
1612	 43.61	0	2017356..2017676	+	106	148653429	-	PsycPRwf_1631	-	iron-sulfur cluster assembly protein IscA
1613	 43.30	0	2017875..2018426	+	183	148653430	-	PsycPRwf_1632	-	co-chaperone Hsc20
1614	 48.95	0	2018531..2020483	+	650	148653431	hscA	PsycPRwf_1633	-	chaperone protein HscA
1615	 44.84	0	2020567..2020905	+	112	148653432	-	PsycPRwf_1634	-	ferredoxin, 2Fe-2S type, ISC system
1616	 44.14	0	2021007..2021441	-	144	148653433	-	PsycPRwf_1635	-	histidine triad (HIT) protein
1617	 48.19	0	2022248..2026063	-	1271	148653434	-	PsycPRwf_1636	-	transcription-repair coupling factor
1618	 46.21	0	2026354..2026881	-	175	148653435	-	PsycPRwf_1638	-	ribonuclease activity regulator protein RraA
1619	 43.88	0	2026984..2027694	-	236	148653436	-	PsycPRwf_1639	-	nucleoside-diphosphate-sugar epimerase-like protein
1620	 43.21	0	2028050..2028454	+	134	148653437	rpsF	PsycPRwf_1640	-	30S ribosomal protein S6
1621	 39.47	-1	2028481..2028708	+	75	148653438	rpsR	PsycPRwf_1641	-	30S ribosomal protein S18
1622	 43.64	0	2028728..2029222	+	164	148653439	rplI	PsycPRwf_1642	-	50S ribosomal protein L9
1623	 45.26	0	2030394..2031575	-	393	148653440	-	PsycPRwf_1643	-	competence/damage-inducible protein CinA
1624	 42.29	-1	2032262..2032987	+	241	148653441	-	PsycPRwf_1644	-	hypothetical protein
1625	 44.75	0	2033068..2034477	-	469	148653442	-	PsycPRwf_1645	-	glutamine synthetase, type I
1626	 45.11	0	2035184..2035786	+	200	148653443	-	PsycPRwf_1646	-	glutamine amidotransferase of anthranilate synthase
1627	 46.94	0	2035861..2036970	+	369	148653444	trpD	PsycPRwf_1647	-	anthranilate phosphoribosyltransferase
1628	 46.81	0	2037011..2037856	+	281	148653445	-	PsycPRwf_1648	-	indole-3-glycerol-phosphate synthase
1629	 45.13	0	2037904..2038632	+	242	148653446	-	PsycPRwf_1649	-	Smr protein/MutS2
1630	 44.54	0	2038751..2040463	-	570	148653447	-	PsycPRwf_1650	-	MscS mechanosensitive ion channel
1631	 39.65	-1	2040776..2042722	+	648	148653448	-	PsycPRwf_1651	-	TonB-dependent receptor
1632	 40.03	-1	2042854..2043540	-	228	148653449	-	PsycPRwf_1652	-	TetR family transcriptional regulator
1633	 44.64	0	2043740..2044765	-	341	148653450	-	PsycPRwf_1653	-	endonuclease/exonuclease/phosphatase
1634	 48.62	0	2044902..2046491	-	529	148653451	-	PsycPRwf_1654	-	glycerol kinase
1635	 46.78	0	2046611..2047867	-	418	148653452	-	PsycPRwf_1655	-	putative oxygen-independent coproporphyrinogen III oxidase
1636	 47.48	0	2048272..2049642	+	456	148653453	-	PsycPRwf_1656	-	MATE efflux family protein
1637	 45.00	0	2049827..2050246	+	139	148653454	-	PsycPRwf_1657	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
1638	 47.04	0	2050262..2051611	+	449	148653455	-	PsycPRwf_1658	-	acetyl-CoA carboxylase, biotin carboxylase
1639	 45.39	0	2051713..2052948	-	411	148653456	-	PsycPRwf_1659	-	argininosuccinate synthase
1640	 49.02	0	2053483..2054604	+	373	148653457	-	PsycPRwf_1660	-	dihydroorotase
1641	 45.09	0	2054678..2055502	+	274	148653458	-	PsycPRwf_1661	-	ribonuclease T
1642	 48.82	0	2056464..2057225	-	253	148653459	-	PsycPRwf_1662	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1643	 43.22	0	2057237..2057590	-	117	148653460	-	PsycPRwf_1663	-	septum formation initiator
1644	 45.86	0	2057782..2059098	-	438	148653461	-	PsycPRwf_1664	-	phosphopyruvate hydratase
1645	 49.59	+1	2059338..2061662	-	774	148653462	-	PsycPRwf_1665	-	heavy metal translocating P-type ATPase
1646	 48.65	0	2061862..2062083	-	73	148653463	-	PsycPRwf_1666	-	copper ion binding protein
1647	 45.78	0	2062151..2062399	-	82	148653464	-	PsycPRwf_1667	-	hypothetical protein
1648	 45.76	0	2062443..2063303	-	286	148653465	-	PsycPRwf_1668	-	2-dehydro-3-deoxyphosphooctonate aldolase
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.