IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1512	 45.56	0	1871996..1873435	-	479	148653329	-	PsycPRwf_1531	-	amino acid permease-associated region
1513	 48.33	0	1873550..1874809	-	419	148653330	-	PsycPRwf_1532	-	4-aminobutyrate aminotransferase
1514	 48.66	0	1874952..1876406	-	484	148653331	-	PsycPRwf_1533	-	succinic semialdehyde dehydrogenase
1515	 48.72	0	1876787..1877566	+	259	148653332	-	PsycPRwf_1534	-	regulatory protein, IclR
1516	 51.65	+1	1877625..1878863	-	412	148653333	-	PsycPRwf_1535	-	L-carnitine dehydratase/bile acid-inducible protein F
1517	 48.04	0	1878993..1880189	-	398	148653334	-	PsycPRwf_1536	-	acyl-CoA dehydrogenase domain-containing protein
1518	 47.78	0	1880460..1881407	+	315	148653335	-	PsycPRwf_1537	-	regulatory protein, IclR
1519	 48.48	0	1881491..1883491	-	666	148653336	-	PsycPRwf_1538	-	transketolase
1520	 48.33	0	1883643..1884929	-	428	148653337	-	PsycPRwf_1539	-	seryl-tRNA synthetase
1521	 44.65	0	1885336..1885998	+	220	148653338	-	PsycPRwf_1540	-	hypothetical protein
1522	 41.19	-1	1886498..1886968	+	156	148653339	-	PsycPRwf_1541	-	Ferritin, Dps family protein
1523	 45.76	0	1887093..1888541	-	482	148653340	-	PsycPRwf_1542	-	anion transporter
1524	 47.60	0	1888886..1889635	+	249	148653341	-	PsycPRwf_1543	-	AzlC family protein
1525	 48.33	0	1889625..1889984	+	119	148653342	-	PsycPRwf_1544	-	branched-chain amino acid transport
1526	 46.07	0	1890237..1891649	+	470	148653343	aspA	PsycPRwf_1545	-	aspartate ammonia-lyase
1527	 49.36	+1	1891753..1892145	+	130	148653344	-	PsycPRwf_1546	-	hypothetical protein
1528	 45.82	0	1892262..1893206	-	314	148653345	-	PsycPRwf_1547	-	uroporphyrin-III C-methyltransferase
1529	 46.69	0	1893334..1896336	-	1000	148653346	-	PsycPRwf_1548	-	molybdopterin oxidoreductase
1530	 46.21	0	1896417..1897892	-	491	148653347	-	PsycPRwf_1549	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1531	 43.41	0	1897987..1899990	-	667	148653348	-	PsycPRwf_1550	-	protein kinase
1532	 43.38	0	1900380..1901882	-	500	148653349	-	PsycPRwf_1551	-	major facilitator transporter
1533	 43.85	0	1902246..1904888	+	880	148653350	-	PsycPRwf_1552	-	nitrite reductase (NAD(P)H), large subunit
1534	 43.92	0	1904985..1905362	+	125	148653351	-	PsycPRwf_1553	-	nitrite reductase (NAD(P)H), small subunit
1535	 45.33	0	1905482..1907599	-	705	148653352	-	PsycPRwf_1554	-	excinuclease ABC subunit B
1536	 47.84	0	1907801..1908496	-	231	148653353	-	PsycPRwf_1555	-	hypothetical protein
1537	 44.83	0	1908631..1909239	-	202	148653354	-	PsycPRwf_1556	-	hypothetical protein
1538	 46.74	0	1909291..1909857	-	188	148653355	-	PsycPRwf_1557	-	thioesterase superfamily protein
1539	 41.81	-1	1911015..1911356	+	113	148653356	-	PsycPRwf_1558	-	hypothetical protein
1540	 48.62	0	1911917..1913146	-	409	148653357	-	PsycPRwf_1559	-	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
1541	 46.31	0	1913252..1915231	-	659	148653358	-	PsycPRwf_1560	-	AAA ATPase
1542	 47.46	0	1915354..1915983	-	209	148653359	-	PsycPRwf_1561	-	hypothetical protein
1543	 46.11	0	1916201..1916959	-	252	148653360	-	PsycPRwf_1562	-	beta-lactamase domain-containing protein
1544	 50.00	+1	1917213..1917902	-	229	148653361	-	PsycPRwf_1563	-	Delta 1-pyrroline-5-carboxylate dehydrogenase-like protein
1545	 49.84	+1	1917978..1921193	-	1071	148653362	-	PsycPRwf_1564	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1546	 44.83	0	1921624..1922919	-	431	148653363	-	PsycPRwf_1565	-	xanthine/uracil/vitamin C permease
1547	 47.47	0	1923585..1924376	+	263	148653364	-	PsycPRwf_1566	-	Tol-Pal system, TolQ
1548	 47.78	0	1924389..1924838	+	149	148653365	-	PsycPRwf_1567	-	biopolymer transport protein ExbD/TolR
1549	 52.19	+1	1924916..1925806	+	296	148653366	-	PsycPRwf_1568	-	TonB family protein
1550	 48.74	0	1925907..1927256	+	449	148653367	-	PsycPRwf_1569	-	WD40 domain-containing protein
1551	 52.02	+1	1927630..1928271	-	213	148653368	-	PsycPRwf_1570	-	NADPH-dependent FMN reductase
1552	 48.99	0	1928366..1929457	-	363	148653369	-	PsycPRwf_1571	-	hypothetical protein
1553	 49.88	+1	1929617..1930879	-	420	148653370	-	PsycPRwf_1572	-	RluA family pseudouridine synthase
1554	 47.46	0	1931164..1932345	+	393	148653371	-	PsycPRwf_1573	-	DNA uptake lipoprotein-like protein
1555	 48.11	0	1932555..1934672	+	705	148653372	-	PsycPRwf_1574	-	DNA primase
1556	 46.74	0	1935099..1936970	+	623	148653373	-	PsycPRwf_1575	-	RNA polymerase, sigma 70 subunit, RpoD
1557	 41.52	-1	1937168..1937509	+	113	148653374	-	PsycPRwf_1576	-	hypothetical protein
1558	 46.55	0	1938073..1940349	+	758	148653375	-	PsycPRwf_1577	-	ribonucleotide-diphosphate reductase subunit alpha
1559	 43.03	0	1940551..1941684	+	377	148653376	nrdB	PsycPRwf_1578	-	ribonucleotide-diphosphate reductase subunit beta
1560	 44.96	0	1941768..1942025	+	85	148653377	-	PsycPRwf_1579	-	ferredoxin
1561	 48.50	0	1942145..1943476	-	443	148653378	-	PsycPRwf_1580	-	2-alkenal reductase
1562	 48.45	0	1943786..1944592	+	268	148653379	-	PsycPRwf_1581	-	hypothetical protein
1563	 48.09	0	1945742..1946974	+	410	148653380	-	PsycPRwf_1582	-	lytic transglycosylase, catalytic
1564	 48.52	0	1947065..1950304	-	1079	148653381	-	PsycPRwf_1583	-	lytic transglycosylase, catalytic
1565	 44.92	0	1950440..1950931	-	163	148653382	-	PsycPRwf_1584	-	hypothetical protein
1566	 43.67	0	1951224..1952297	-	357	148653383	-	PsycPRwf_1585	-	hypothetical protein
1567	 43.33	0	1952523..1952822	-	99	148653384	-	PsycPRwf_1586	-	histone family protein DNA-binding protein
1568	 44.05	0	1953206..1954885	-	559	148653385	rpsA	PsycPRwf_1587	-	30S ribosomal protein S1
1569	 47.93	0	1955135..1955833	-	232	148653386	-	PsycPRwf_1588	-	cytidylate kinase
1570	 50.79	+1	1956224..1956796	-	190	148653387	-	PsycPRwf_1589	-	CMP/dCMP deaminase, zinc-binding
1571	 44.69	0	1956912..1957721	-	269	148653388	-	PsycPRwf_1590	-	uracil-DNA glycosylase
1572	 45.34	0	1957893..1960457	-	854	148653389	-	PsycPRwf_1591	-	ATP-dependent Clp protease, ATP-binding subunit clpA
1573	 33.78	-2	1960567..1960791	+	74	148653390	-	PsycPRwf_1592	-	hypothetical protein
1574	 43.49	0	1960879..1961823	-	314	148653391	-	PsycPRwf_1593	-	auxin efflux carrier
1575	 48.40	0	1961845..1963344	-	499	148653392	-	PsycPRwf_1594	-	thiamine pyrophosphate binding domain-containing protein
1576	 47.74	0	1963927..1965738	+	603	148653393	-	PsycPRwf_1595	-	pyruvate oxidase
1577	 43.97	0	1965922..1966344	-	140	148653394	-	PsycPRwf_1596	-	ATP-dependent Clp protease adaptor protein ClpS
1578	 45.11	0	1966383..1967189	-	268	148653395	-	PsycPRwf_1597	-	hypothetical protein
1579	 47.00	0	1967533..1968600	-	355	148653396	-	PsycPRwf_1598	-	N-acetyl-gamma-glutamyl-phosphate reductase
1580	 46.43	0	1968809..1969915	-	368	148653397	-	PsycPRwf_1599	-	uroporphyrinogen decarboxylase
1581	 46.96	0	1970059..1971276	-	405	148653398	-	PsycPRwf_1600	-	gamma-glutamyl kinase
1582	 49.13	0	1971426..1972634	-	402	148653399	obgE	PsycPRwf_1601	-	GTPase ObgE
1583	 44.49	0	1972957..1974399	-	480	148653400	-	PsycPRwf_1602	-	glyceraldehyde-3-phosphate dehydrogenase
1584	 45.20	0	1974757..1975422	-	221	148653401	-	PsycPRwf_1603	-	Lipocalin family protein
1585	 46.94	0	1975693..1976802	-	369	148653402	-	PsycPRwf_1604	-	NUDIX hydrolase
1586	 44.85	0	1977042..1977206	+	54	148653403	-	PsycPRwf_1605	-	hypothetical protein
1587	 47.24	0	1977335..1982656	-	1773	148653404	-	PsycPRwf_1606	-	hypothetical protein
1588	 48.14	0	1982958..1986299	-	1113	148653405	-	PsycPRwf_1607	-	surface antigen (D15)
1589	 41.36	-1	1986547..1987866	+	439	148653406	-	PsycPRwf_1608	-	major facilitator transporter
1590	 41.15	-1	1988000..1988191	-	63	148653407	-	PsycPRwf_1609	-	hypothetical protein
1591	 47.23	0	1988720..1990360	+	546	148653408	-	PsycPRwf_1610	-	hypothetical protein
1592	 47.79	0	1990599..1993310	+	903	148653409	-	PsycPRwf_1611	-	alanyl-tRNA synthetase
1593	 46.26	0	1993766..1995049	+	427	148653410	-	PsycPRwf_1612	-	aspartate kinase
1594	 42.28	-1	1995520..1995765	+	81	148653411	-	PsycPRwf_1613	-	carbon storage regulator, CsrA
1595	 42.67	0	1995895..1996269	+	124	148653412	-	PsycPRwf_1614	-	HopJ type III effector protein
1596	 41.67	-1	1996663..1997946	+	427	148653413	-	PsycPRwf_1615	-	transposase, IS4 family protein
1597	 48.87	0	1998065..1998373	-	102	148653414	-	PsycPRwf_1616	-	hypothetical protein
1598	 47.21	0	1998422..1999444	-	340	148653415	ppnK	PsycPRwf_1617	-	inorganic polyphosphate/ATP-NAD kinase
1599	 45.54	0	1999978..2000706	+	242	148653416	-	PsycPRwf_1618	-	hypothetical protein
1600	 49.45	+1	2000832..2003729	-	965	148653417	-	PsycPRwf_1619	-	heavy metal translocating P-type ATPase
1601	 47.54	0	2003947..2006592	+	881	148653418	-	PsycPRwf_1620	-	penicillin-binding protein 1B
1602	 51.77	+1	2006623..2007528	+	301	148653419	-	PsycPRwf_1621	-	hypothetical protein
1603	 48.81	0	2007599..2008522	+	307	148653420	-	PsycPRwf_1622	-	ribosomal protein L11 methyltransferase
1604	 46.20	0	2008625..2008966	+	113	148653421	-	PsycPRwf_1623	-	Fis family transcriptional regulator
1605	 48.19	0	2009136..2010710	+	524	148653422	-	PsycPRwf_1624	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1606	 45.71	0	2010835..2012709	-	624	148653423	-	PsycPRwf_1625	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1607	 40.66	-1	2012852..2013124	-	90	148653424	-	PsycPRwf_1626	-	histone family protein DNA-binding protein
1608	 44.03	0	2013696..2014340	+	214	148653425	-	PsycPRwf_1627	-	hypothetical protein
1609	 42.72	0	2014956..2015477	+	173	148653426	-	PsycPRwf_1628	-	BadM/Rrf2 family transcriptional regulator
1610	 46.13	0	2015474..2016700	+	408	148653427	-	PsycPRwf_1629	-	cysteine desulfurase IscS
1611	 44.78	0	2016824..2017216	+	130	148653428	-	PsycPRwf_1630	-	scaffold protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.