IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1431	 42.85	0	1770053..1771450	-	465	148653248	-	PsycPRwf_1446	-	aldehyde dehydrogenase
1432	 47.17	0	1771635..1772624	-	329	148653249	-	PsycPRwf_1447	-	LysR family transcriptional regulator
1433	 44.51	0	1773186..1774769	+	527	148653250	-	PsycPRwf_1448	-	isocitrate lyase
1434	 46.60	0	1775118..1776677	+	519	148653251	-	PsycPRwf_1449	-	adenylate cyclase
1435	 46.93	0	1776815..1777351	-	178	148653252	-	PsycPRwf_1450	-	ErfK/YbiS/YcfS/YnhG family protein
1436	 45.30	0	1777486..1778613	+	375	148653253	-	PsycPRwf_1451	-	hypothetical protein
1437	 49.08	0	1778728..1779705	-	325	148653254	ruvB	PsycPRwf_1452	-	Holliday junction DNA helicase B
1438	 43.27	0	1780016..1780921	-	301	148653255	-	PsycPRwf_1453	-	LysR family transcriptional regulator
1439	 45.57	0	1781069..1783324	-	751	148653256	-	PsycPRwf_1454	-	DNA polymerase III, subunits gamma and tau
1440	 42.90	0	1783467..1784909	-	480	148653257	-	PsycPRwf_1455	-	hypothetical protein
1441	 45.53	0	1785232..1786764	-	510	148653258	lysS	PsycPRwf_1456	-	lysyl-tRNA synthetase
1442	 48.22	0	1786896..1787990	-	364	148653259	prfA	PsycPRwf_1457	-	peptide chain release factor 1
1443	 44.94	0	1788307..1789452	-	381	148653260	-	PsycPRwf_1458	-	3-oxoacyl-(acyl carrier protein) synthase III
1444	 48.38	0	1789761..1790345	+	194	148653261	-	PsycPRwf_1459	-	ATPase/kinase involved in NAD metabolism-like protein
1445	 49.39	+1	1790372..1791592	-	406	148653262	-	PsycPRwf_1460	-	tryptophan synthase subunit beta
1446	 46.24	0	1791913..1793268	+	451	148653263	-	PsycPRwf_1461	-	sodium:dicarboxylate symporter
1447	 45.61	0	1793547..1794605	+	352	148653264	-	PsycPRwf_1462	-	FMN-dependent alpha-hydroxy acid dehydrogenase
1448	 43.15	0	1794867..1795997	+	376	148653265	-	PsycPRwf_1463	-	porin
1449	 44.44	0	1796736..1797239	+	167	148653266	-	PsycPRwf_1464	-	hypothetical protein
1450	 46.80	0	1797903..1798823	-	306	148653267	-	PsycPRwf_1466	-	hypothetical protein
1451	 49.74	+1	1799366..1799944	+	192	148653268	-	PsycPRwf_1467	-	TetR family transcriptional regulator
1452	 44.44	0	1800001..1801476	+	491	148653269	-	PsycPRwf_1468	-	EmrB/QacA family drug resistance transporter
1453	 40.67	-1	1801499..1801798	+	99	148653270	-	PsycPRwf_1469	-	transposase IS3/IS911 family protein
1454	 42.67	0	1801846..1802145	+	99	148653271	-	PsycPRwf_1470	-	hypothetical protein
1455	 41.52	-1	1802156..1802656	-	166	148653272	-	PsycPRwf_1471	-	integrase catalytic subunit
1456	 41.84	-1	1802698..1803426	-	242	148653273	-	PsycPRwf_1472	-	integrase catalytic subunit
1457	 41.38	-1	1803513..1803773	-	86	148653274	-	PsycPRwf_1473	-	transposase IS3/IS911 family protein
1458	 37.04	-2	1804082..1804675	+	197	148653275	-	PsycPRwf_1474	-	hypothetical protein
1459	 35.25	-2	1806393..1807070	+	225	148653276	-	PsycPRwf_1475	-	hypothetical protein
1460	 43.86	0	1807058..1807912	-	284	148653277	-	PsycPRwf_1476	-	integrase catalytic subunit
1461	 41.41	-1	1807927..1808223	-	98	148653278	-	PsycPRwf_1477	-	transposase IS3/IS911 family protein
1462	 35.18	-2	1808544..1809302	-	252	148653279	-	PsycPRwf_1478	-	integrase catalytic subunit
1463	 36.46	-2	1809371..1809913	-	180	148653280	-	PsycPRwf_1479	-	hypothetical protein
1464	 44.12	0	1809979..1810386	+	135	148653281	-	PsycPRwf_1480	-	transposase IS3/IS911 family protein
1465	 47.25	0	1810383..1810727	+	114	148653282	-	PsycPRwf_1481	-	IS66 Orf2 family protein
1466	 46.44	0	1810770..1812509	+	579	148653283	-	PsycPRwf_1482	-	transposase IS66
1467	 44.06	0	1812836..1813609	-	257	148653284	-	PsycPRwf_1483	-	hypothetical protein
1468	 45.45	0	1813893..1814882	+	329	148653285	-	PsycPRwf_1484	-	alpha/beta fold family hydrolase-like protein
1469	 47.22	0	1814963..1817296	-	777	148653286	-	PsycPRwf_1485	-	outer membrane receptor FepA
1470	 42.48	-1	1817682..1818632	+	316	148653287	-	PsycPRwf_1486	-	hypothetical protein
1471	 46.37	0	1818642..1819577	-	311	148653288	-	PsycPRwf_1487	-	hypothetical protein
1472	 47.18	0	1819783..1820331	-	182	148653289	-	PsycPRwf_1488	-	isochorismatase hydrolase
1473	 41.15	-1	1820717..1821151	+	144	148653290	-	PsycPRwf_1489	-	hypothetical protein
1474	 36.06	-2	1821766..1823085	-	439	148653291	-	PsycPRwf_1490	-	nucleoside recognition domain-containing protein
1475	 41.84	-1	1823544..1824272	-	242	148653292	-	PsycPRwf_1492	-	integrase catalytic subunit
1476	 41.38	-1	1824359..1824619	-	86	148653293	-	PsycPRwf_1493	-	transposase IS3/IS911 family protein
1477	 41.33	-1	1824675..1825049	-	124	148653294	-	PsycPRwf_1494	-	hypothetical protein
1478	 45.05	0	1825705..1826523	-	272	148653295	-	PsycPRwf_1495	-	integrase catalytic subunit
1479	 43.43	0	1826574..1826870	-	98	148653296	-	PsycPRwf_1496	-	transposase IS3/IS911 family protein
1480	 49.52	+1	1827022..1827954	+	310	148653297	-	PsycPRwf_1497	-	homocysteine S-methyltransferase
1481	 47.46	0	1827959..1829296	+	445	148653298	-	PsycPRwf_1498	-	amino acid permease-associated region
1482	 45.89	0	1829561..1830691	+	376	148653299	-	PsycPRwf_1499	-	sugar efflux transporter
1483	 48.24	0	1830832..1833099	+	755	148653300	-	PsycPRwf_1500	-	TonB-dependent siderophore receptor
1484	 46.77	0	1833308..1834981	+	557	148653301	-	PsycPRwf_1501	-	cyclic peptide transporter
1485	 46.46	0	1835131..1836288	+	385	148653302	-	PsycPRwf_1502	-	siderophore-interacting protein
1486	 44.77	0	1836414..1838345	-	643	148653303	-	PsycPRwf_1503	-	TonB-dependent siderophore receptor
1487	 41.84	-1	1838479..1839207	-	242	148653304	-	PsycPRwf_1504	-	integrase catalytic subunit
1488	 41.38	-1	1839294..1839554	-	86	148653305	-	PsycPRwf_1505	-	transposase IS3/IS911 family protein
1489	 45.10	0	1839823..1841946	-	707	148653306	-	PsycPRwf_1506	-	TonB-dependent receptor
1490	 48.10	0	1842226..1843410	+	394	148653307	-	PsycPRwf_1507	-	hemin-degrading family protein
1491	 50.68	+1	1843477..1844283	+	268	148653308	-	PsycPRwf_1508	-	periplasmic binding protein
1492	 50.92	+1	1844304..1845281	+	325	148653309	-	PsycPRwf_1509	-	transport system permease protein
1493	 48.40	0	1845426..1846301	+	291	148653310	-	PsycPRwf_1510	-	ABC transporter related
1494	 44.96	0	1846310..1847608	-	432	148653311	-	PsycPRwf_1511	-	hypothetical protein
1495	 45.52	0	1847843..1848244	-	133	148653312	-	PsycPRwf_1512	-	biopolymer transport protein ExbD/TolR
1496	 47.42	0	1848287..1848946	-	219	148653313	-	PsycPRwf_1513	-	MotA/TolQ/ExbB proton channel
1497	 51.20	+1	1849158..1850153	-	331	148653314	-	PsycPRwf_1514	-	TonB family protein
1498	 44.33	0	1850626..1851234	+	202	148653315	-	PsycPRwf_1515	-	YceI family protein
1499	 48.52	0	1851259..1851798	-	179	148653316	-	PsycPRwf_1516	-	hypothetical protein
1500	 44.70	0	1852029..1852820	+	263	148653317	-	PsycPRwf_1517	-	hypothetical protein
1501	 45.97	0	1853321..1854412	+	363	148653318	-	PsycPRwf_1518	-	hypothetical protein
1502	 43.90	0	1854520..1856553	-	677	148653319	-	PsycPRwf_1519	-	TonB-dependent heme/hemoglobin receptor family protein
1503	 45.35	0	1857063..1859342	+	759	148653320	-	PsycPRwf_1520	-	nitric oxide reductase large subunit-like protein
1504	 45.13	0	1860862..1861641	-	259	148653321	-	PsycPRwf_1523	-	2OG-Fe(II) oxygenase
1505	 42.77	0	1861839..1864382	-	847	148653322	-	PsycPRwf_1524	-	TonB-dependent siderophore receptor
1506	 39.74	-1	1865037..1865738	+	233	148653323	-	PsycPRwf_1525	-	IS1 transposase
1507	 44.46	0	1865892..1867526	+	544	148653324	-	PsycPRwf_1526	-	extracellular solute-binding protein
1508	 47.98	0	1867737..1868753	+	338	148653325	-	PsycPRwf_1527	-	nickel-transporting ATPase
1509	 49.78	+1	1868850..1869761	+	303	148653326	-	PsycPRwf_1528	-	binding-protein-dependent transport systems inner membrane component
1510	 49.01	0	1869761..1870870	+	369	148653327	-	PsycPRwf_1529	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1511	 50.78	+1	1870867..1871898	+	343	148653328	dppF	PsycPRwf_1530	-	dipeptide transporter ATP-binding subunit
1512	 45.56	0	1871996..1873435	-	479	148653329	-	PsycPRwf_1531	-	amino acid permease-associated region
1513	 48.33	0	1873550..1874809	-	419	148653330	-	PsycPRwf_1532	-	4-aminobutyrate aminotransferase
1514	 48.66	0	1874952..1876406	-	484	148653331	-	PsycPRwf_1533	-	succinic semialdehyde dehydrogenase
1515	 48.72	0	1876787..1877566	+	259	148653332	-	PsycPRwf_1534	-	regulatory protein, IclR
1516	 51.65	+1	1877625..1878863	-	412	148653333	-	PsycPRwf_1535	-	L-carnitine dehydratase/bile acid-inducible protein F
1517	 48.04	0	1878993..1880189	-	398	148653334	-	PsycPRwf_1536	-	acyl-CoA dehydrogenase domain-containing protein
1518	 47.78	0	1880460..1881407	+	315	148653335	-	PsycPRwf_1537	-	regulatory protein, IclR
1519	 48.48	0	1881491..1883491	-	666	148653336	-	PsycPRwf_1538	-	transketolase
1520	 48.33	0	1883643..1884929	-	428	148653337	-	PsycPRwf_1539	-	seryl-tRNA synthetase
1521	 44.65	0	1885336..1885998	+	220	148653338	-	PsycPRwf_1540	-	hypothetical protein
1522	 41.19	-1	1886498..1886968	+	156	148653339	-	PsycPRwf_1541	-	Ferritin, Dps family protein
1523	 45.76	0	1887093..1888541	-	482	148653340	-	PsycPRwf_1542	-	anion transporter
1524	 47.60	0	1888886..1889635	+	249	148653341	-	PsycPRwf_1543	-	AzlC family protein
1525	 48.33	0	1889625..1889984	+	119	148653342	-	PsycPRwf_1544	-	branched-chain amino acid transport
1526	 46.07	0	1890237..1891649	+	470	148653343	aspA	PsycPRwf_1545	-	aspartate ammonia-lyase
1527	 49.36	+1	1891753..1892145	+	130	148653344	-	PsycPRwf_1546	-	hypothetical protein
1528	 45.82	0	1892262..1893206	-	314	148653345	-	PsycPRwf_1547	-	uroporphyrin-III C-methyltransferase
1529	 46.69	0	1893334..1896336	-	1000	148653346	-	PsycPRwf_1548	-	molybdopterin oxidoreductase
1530	 46.21	0	1896417..1897892	-	491	148653347	-	PsycPRwf_1549	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.