IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.93   STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1363	 45.86	0	1691028..1692440	-	470	148653180	-	PsycPRwf_1378	-	aldehyde dehydrogenase
1364	 46.19	0	1692635..1693513	-	292	148653181	-	PsycPRwf_1379	-	short-chain dehydrogenase/reductase SDR
1365	 47.26	0	1693750..1694553	+	267	148653182	-	PsycPRwf_1380	-	lipoate-protein ligase B
1366	 45.18	0	1694580..1695263	+	227	148653183	-	PsycPRwf_1381	-	hypothetical protein
1367	 51.92	+1	1695390..1697294	+	634	148653184	-	PsycPRwf_1382	-	dihydroxy-acid dehydratase
1368	 43.77	0	1697388..1697684	-	98	148653185	-	PsycPRwf_1383	-	hypothetical protein
1369	 45.67	0	1697831..1698292	+	153	148653186	-	PsycPRwf_1384	-	hypothetical protein
1370	 46.27	0	1698648..1699907	+	419	148653187	-	PsycPRwf_1385	-	sodium/hydrogen exchanger
1371	 47.87	0	1700016..1701377	-	453	148653188	-	PsycPRwf_1386	-	beta-lactamase
1372	 48.40	0	1701450..1701980	-	176	148653189	-	PsycPRwf_1387	-	hypothetical protein
1373	 44.04	0	1702115..1703011	-	298	148653190	-	PsycPRwf_1388	-	dehydratase
1374	 47.11	0	1703177..1704577	-	466	148653191	fabG	PsycPRwf_1389	-	3-ketoacyl-(acyl-carrier-protein) reductase
1375	 46.80	0	1705218..1707044	+	608	148653192	-	PsycPRwf_1390	-	acetyl-CoA acetyltransferase
1376	 48.62	0	1707155..1708279	-	374	148653193	-	PsycPRwf_1391	-	DNA-directed DNA polymerase
1377	 41.10	-1	1708335..1709441	-	368	148653194	-	PsycPRwf_1392	-	IS605 family transposase OrfB
1378	 48.31	0	1709589..1710416	-	275	148653195	-	PsycPRwf_1393	-	3-deoxy-manno-octulosonate cytidylyltransferase
1379	 49.47	+1	1710550..1711677	-	375	148653196	-	PsycPRwf_1394	-	tetraacyldisaccharide 4'-kinase
1380	 46.15	0	1711848..1713680	-	610	148653197	-	PsycPRwf_1395	-	lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
1381	 49.40	+1	1713809..1714897	-	362	148653198	-	PsycPRwf_1396	-	parB-like partition protein
1382	 47.03	0	1715138..1715911	-	257	148653199	-	PsycPRwf_1397	-	cobyrinic acid a,c-diamide synthase
1383	 42.92	0	1716031..1716708	-	225	148653200	-	PsycPRwf_1398	-	methyltransferase GidB
1384	 47.31	0	1716885..1719317	+	810	148653201	-	PsycPRwf_1399	-	peptidase S16, lon domain-containing protein
1385	 49.53	+1	1719425..1720492	+	355	148653202	-	PsycPRwf_1400	-	hypothetical protein
1386	 48.18	0	1720605..1721264	+	219	148653203	-	PsycPRwf_1401	-	hypothetical protein
1387	 43.27	0	1721356..1722351	-	331	148653204	-	PsycPRwf_1402	-	Ion transport protein
1388	 47.81	0	1722528..1724213	-	561	148653205	-	PsycPRwf_1403	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
1389	 47.31	0	1724342..1727167	-	941	148653206	aceE	PsycPRwf_1404	-	pyruvate dehydrogenase subunit E1
1390	 45.80	0	1727862..1728302	+	146	148653207	-	PsycPRwf_1405	-	hypothetical protein
1391	 43.34	0	1728378..1729496	-	372	148653208	-	PsycPRwf_1406	-	AFG1 family ATPase
1392	 48.65	0	1729553..1730218	-	221	148653209	-	PsycPRwf_1407	-	alpha/beta fold family hydrolase-like protein
1393	 46.61	0	1730681..1731064	+	127	148653210	-	PsycPRwf_1408	-	hypothetical protein
1394	 48.17	0	1731126..1732163	-	345	148653211	-	PsycPRwf_1409	-	binding-protein-dependent transport systems inner membrane component
1395	 45.79	0	1732165..1733232	-	355	148653212	-	PsycPRwf_1410	-	binding-protein-dependent transport systems inner membrane component
1396	 48.72	0	1733302..1734081	-	259	148653213	-	PsycPRwf_1411	-	hydroxyacylglutathione hydrolase
1397	 46.13	0	1734151..1736010	-	619	148653214	-	PsycPRwf_1412	-	extracellular solute-binding protein
1398	 46.95	0	1736047..1737192	-	381	148653215	-	PsycPRwf_1413	-	phosphoserine aminotransferase
1399	 48.09	0	1737306..1738118	-	270	148653216	-	PsycPRwf_1414	-	hypothetical protein
1400	 43.44	0	1738475..1739374	-	299	148653217	-	PsycPRwf_1415	-	NLPA lipoprotein
1401	 47.22	0	1739618..1740301	-	227	148653218	-	PsycPRwf_1416	-	binding-protein-dependent transport systems inner membrane component
1402	 45.49	0	1740305..1741069	-	254	148653219	-	PsycPRwf_1417	-	ABC transporter related
1403	 40.10	-1	1741312..1741518	-	68	148653220	-	PsycPRwf_1418	-	hypothetical protein
1404	 49.22	0	1741876..1743153	+	425	148653221	-	PsycPRwf_1419	-	phosphoribosylamine--glycine ligase
1405	 46.61	0	1743449..1744909	+	486	148653222	-	PsycPRwf_1420	-	hypothetical protein
1406	 47.20	0	1745011..1745796	-	261	148653223	-	PsycPRwf_1421	-	putative methyltransferase
1407	 49.76	+1	1745959..1746165	+	68	148653224	-	PsycPRwf_1422	-	hypothetical protein
1408	 49.37	+1	1746284..1747480	+	398	148653225	-	PsycPRwf_1423	-	acetylornithine aminotransferase
1409	 48.34	0	1747578..1748210	-	210	148653226	-	PsycPRwf_1424	-	Holliday junction DNA helicase RuvA
1410	 49.59	+1	1748378..1748746	-	122	148653227	-	PsycPRwf_1425	-	hypothetical protein
1411	 44.00	0	1749092..1750300	-	402	148653228	-	PsycPRwf_1426	-	phosphoglycerate kinase
1412	 44.55	0	1750571..1750900	+	109	148653229	-	PsycPRwf_1427	-	TraR/DksA family transcriptional regulator
1413	 46.67	0	1751034..1752068	-	344	148653230	-	PsycPRwf_1428	-	peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
1414	 42.61	0	1752505..1753140	+	211	148653231	-	PsycPRwf_1429	-	two component LuxR family transcriptional regulator
1415	 47.66	0	1753258..1754772	-	504	148653232	-	PsycPRwf_1430	-	carboxyl-terminal protease
1416	 46.64	0	1754801..1756393	-	530	148653233	-	PsycPRwf_1431	-	phosphoglyceromutase
1417	 44.99	0	1757028..1757636	-	202	148653234	-	PsycPRwf_1432	-	FxsA cytoplasmic membrane protein
1418	 49.23	0	1757863..1758447	+	194	148653235	-	PsycPRwf_1433	-	crossover junction endodeoxyribonuclease RuvC
1419	 48.77	0	1758453..1759307	-	284	148653236	-	PsycPRwf_1434	-	hypothetical protein
1420	 41.59	-1	1759343..1759972	-	209	148653237	-	PsycPRwf_1435	-	glutathione S-transferase domain-containing protein
1421	 43.61	0	1760224..1760865	-	213	148653238	-	PsycPRwf_1436	-	peroxidase
1422	 43.54	0	1761205..1761831	-	208	148653239	-	PsycPRwf_1437	-	hypothetical protein
1423	 43.42	0	1762060..1762872	-	270	148653240	-	PsycPRwf_1438	-	ATPase involved in DNA replication initiation-like protein
1424	 43.42	0	1763049..1764149	-	366	148653241	-	PsycPRwf_1439	-	hypothetical protein
1425	 47.99	0	1764519..1765610	+	363	148653242	-	PsycPRwf_1440	-	phosphoribosylaminoimidazole synthetase
1426	 49.07	0	1765612..1766310	+	232	148653243	-	PsycPRwf_1441	-	phosphoribosylglycinamide formyltransferase
1427	 46.18	0	1766405..1767058	-	217	148653244	-	PsycPRwf_1442	-	lysine exporter protein LysE/YggA
1428	 43.95	0	1767158..1767892	-	244	148653245	-	PsycPRwf_1443	-	ABC transporter related
1429	 42.84	0	1767941..1768897	-	318	148653246	-	PsycPRwf_1444	-	NMT1/THI5-like protein
1430	 40.26	-1	1769036..1769815	-	259	148653247	-	PsycPRwf_1445	-	binding-protein-dependent transport systems inner membrane component
1431	 42.85	0	1770053..1771450	-	465	148653248	-	PsycPRwf_1446	-	aldehyde dehydrogenase
1432	 47.17	0	1771635..1772624	-	329	148653249	-	PsycPRwf_1447	-	LysR family transcriptional regulator
1433	 44.51	0	1773186..1774769	+	527	148653250	-	PsycPRwf_1448	-	isocitrate lyase
1434	 46.60	0	1775118..1776677	+	519	148653251	-	PsycPRwf_1449	-	adenylate cyclase
1435	 46.93	0	1776815..1777351	-	178	148653252	-	PsycPRwf_1450	-	ErfK/YbiS/YcfS/YnhG family protein
1436	 45.30	0	1777486..1778613	+	375	148653253	-	PsycPRwf_1451	-	hypothetical protein
1437	 49.08	0	1778728..1779705	-	325	148653254	ruvB	PsycPRwf_1452	-	Holliday junction DNA helicase B
1438	 43.27	0	1780016..1780921	-	301	148653255	-	PsycPRwf_1453	-	LysR family transcriptional regulator
1439	 45.57	0	1781069..1783324	-	751	148653256	-	PsycPRwf_1454	-	DNA polymerase III, subunits gamma and tau
1440	 42.90	0	1783467..1784909	-	480	148653257	-	PsycPRwf_1455	-	hypothetical protein
1441	 45.53	0	1785232..1786764	-	510	148653258	lysS	PsycPRwf_1456	-	lysyl-tRNA synthetase
1442	 48.22	0	1786896..1787990	-	364	148653259	prfA	PsycPRwf_1457	-	peptide chain release factor 1
1443	 44.94	0	1788307..1789452	-	381	148653260	-	PsycPRwf_1458	-	3-oxoacyl-(acyl carrier protein) synthase III
1444	 48.38	0	1789761..1790345	+	194	148653261	-	PsycPRwf_1459	-	ATPase/kinase involved in NAD metabolism-like protein
1445	 49.39	+1	1790372..1791592	-	406	148653262	-	PsycPRwf_1460	-	tryptophan synthase subunit beta
1446	 46.24	0	1791913..1793268	+	451	148653263	-	PsycPRwf_1461	-	sodium:dicarboxylate symporter
1447	 45.61	0	1793547..1794605	+	352	148653264	-	PsycPRwf_1462	-	FMN-dependent alpha-hydroxy acid dehydrogenase
1448	 43.15	0	1794867..1795997	+	376	148653265	-	PsycPRwf_1463	-	porin
1449	 44.44	0	1796736..1797239	+	167	148653266	-	PsycPRwf_1464	-	hypothetical protein
1450	 46.80	0	1797903..1798823	-	306	148653267	-	PsycPRwf_1466	-	hypothetical protein
1451	 49.74	+1	1799366..1799944	+	192	148653268	-	PsycPRwf_1467	-	TetR family transcriptional regulator
1452	 44.44	0	1800001..1801476	+	491	148653269	-	PsycPRwf_1468	-	EmrB/QacA family drug resistance transporter
1453	 40.67	-1	1801499..1801798	+	99	148653270	-	PsycPRwf_1469	-	transposase IS3/IS911 family protein
1454	 42.67	0	1801846..1802145	+	99	148653271	-	PsycPRwf_1470	-	hypothetical protein
1455	 41.52	-1	1802156..1802656	-	166	148653272	-	PsycPRwf_1471	-	integrase catalytic subunit
1456	 41.84	-1	1802698..1803426	-	242	148653273	-	PsycPRwf_1472	-	integrase catalytic subunit
1457	 41.38	-1	1803513..1803773	-	86	148653274	-	PsycPRwf_1473	-	transposase IS3/IS911 family protein
1458	 37.04	-2	1804082..1804675	+	197	148653275	-	PsycPRwf_1474	-	hypothetical protein
1459	 35.25	-2	1806393..1807070	+	225	148653276	-	PsycPRwf_1475	-	hypothetical protein
1460	 43.86	0	1807058..1807912	-	284	148653277	-	PsycPRwf_1476	-	integrase catalytic subunit
1461	 41.41	-1	1807927..1808223	-	98	148653278	-	PsycPRwf_1477	-	transposase IS3/IS911 family protein
1462	 35.18	-2	1808544..1809302	-	252	148653279	-	PsycPRwf_1478	-	integrase catalytic subunit
45.93	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.