IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.93   STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
91	 44.98	0	110349..110597	-	82	148651908	-	PsycPRwf_0091	-	hypothetical protein
92	 49.83	+1	110832..112007	-	391	148651909	-	PsycPRwf_0092	-	ApbE family lipoprotein
93	 49.19	0	112127..112927	-	266	148651910	-	PsycPRwf_0093	-	short-chain dehydrogenase/reductase SDR
94	 41.67	-1	113061..114344	+	427	148651911	-	PsycPRwf_0094	-	transposase, IS4 family protein
95	 46.41	0	114491..115729	-	412	148651912	-	PsycPRwf_0095	-	Na(+)-translocating NADH-quinone reductase subunit F
96	 44.17	0	115794..116402	-	202	148651913	-	PsycPRwf_0096	-	Na(+)-translocating NADH-quinone reductase subunit E
97	 42.81	0	116402..117076	-	224	148651914	-	PsycPRwf_0097	-	Na(+)-translocating NADH-quinone reductase subunit D
98	 46.41	0	117078..117941	-	287	148651915	-	PsycPRwf_0098	-	Na(+)-translocating NADH-quinone reductase subunit C
99	 48.01	0	117925..119157	-	410	148651916	-	PsycPRwf_0099	-	Na(+)-translocating NADH-quinone reductase subunit B
100	 48.35	0	119163..120527	-	454	148651917	-	PsycPRwf_0100	-	Na(+)-translocating NADH-quinone reductase subunit A
101	 51.54	+1	120917..121696	+	259	148651918	-	PsycPRwf_0101	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
102	 48.64	0	121869..123482	+	537	148651919	-	PsycPRwf_0102	-	MscS mechanosensitive ion channel
103	 45.83	0	123597..123812	-	71	148651920	-	PsycPRwf_0103	-	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase-like protein
104	 45.09	0	123847..125037	+	396	148651921	-	PsycPRwf_0104	-	hypothetical protein
105	 47.58	0	125180..126169	+	329	148651922	-	PsycPRwf_0105	-	alcohol dehydrogenase
106	 45.85	0	126261..126899	-	212	148651923	-	PsycPRwf_0106	-	2OG-Fe(II) oxygenase
107	 49.26	0	126926..127873	-	315	148651924	-	PsycPRwf_0107	-	alpha/beta hydrolase fold
108	 49.56	+1	128077..129987	-	636	148651925	-	PsycPRwf_0108	-	ABC transporter related
109	 47.80	0	130474..131358	+	294	148651926	-	PsycPRwf_0109	-	hypothetical protein
110	 48.24	0	131560..132525	-	321	148651927	-	PsycPRwf_0110	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
111	 36.00	-2	132728..132952	+	74	148651928	-	PsycPRwf_0111	-	hypothetical protein
112	 50.05	+1	133133..136015	+	960	148651929	-	PsycPRwf_0112	-	ATP-dependent helicase HepA
113	 51.71	+1	136158..136625	+	155	148651930	-	PsycPRwf_0113	-	ybaK/ebsC protein
114	 49.60	+1	136691..137065	+	124	148651931	-	PsycPRwf_0114	-	5-carboxymethyl-2-hydroxymuconate isomerase-like protein
115	 49.28	0	137070..137558	-	162	148651932	-	PsycPRwf_0115	-	hypothetical protein
116	 44.15	0	137725..139545	-	606	148651933	-	PsycPRwf_0116	-	acyl-CoA dehydrogenase domain-containing protein
117	 41.10	-1	139848..140954	-	368	148651934	-	PsycPRwf_0117	-	IS605 family transposase OrfB
118	 47.37	0	141266..142369	+	367	148651935	-	PsycPRwf_0118	-	hypothetical protein
119	 49.27	0	142442..143326	-	294	148651936	-	PsycPRwf_0119	-	shikimate 5-dehydrogenase
120	 47.84	0	143813..144508	+	231	148651937	-	PsycPRwf_0120	-	hypothetical protein
121	 51.58	+1	144592..145572	+	326	148651938	-	PsycPRwf_0121	-	branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase-like protein
122	 38.81	-2	145518..145718	-	66	148651939	-	PsycPRwf_0122	-	hypothetical protein
123	 38.83	-2	145859..146422	+	187	148651940	-	PsycPRwf_0123	-	hypothetical protein
124	 41.44	-1	146473..147237	-	254	148651941	-	PsycPRwf_0124	-	Type II site-specific deoxyribonuclease
125	 49.24	0	147359..148540	+	393	148651942	-	PsycPRwf_0125	-	aminodeoxychorismate lyase
126	 50.24	+1	148636..149262	+	208	148651943	-	PsycPRwf_0126	-	dTMP kinase
127	 47.53	0	149406..151688	-	760	148651944	-	PsycPRwf_0127	-	sodium/hydrogen exchanger
128	 51.02	+1	152506..153930	+	474	148651945	-	PsycPRwf_0128	-	protease Do
129	 46.55	0	154567..155451	-	294	148651946	-	PsycPRwf_0129	-	pirin domain-containing protein
130	 44.77	0	155658..156164	+	168	148651947	-	PsycPRwf_0130	-	hypothetical protein
131	 48.48	0	156290..157807	-	505	148651948	gltX	PsycPRwf_0131	-	glutamyl-tRNA synthetase
132	 51.37	+1	158286..159305	+	339	148651949	-	PsycPRwf_0132	-	S-adenosyl-methyltransferase MraW
133	 48.15	0	159459..159917	+	152	148651950	-	PsycPRwf_0133	-	cell division protein FtsL
134	 48.61	0	160003..162012	+	669	148651951	-	PsycPRwf_0134	-	peptidoglycan glycosyltransferase
135	 50.35	+1	162117..163826	+	569	148651952	-	PsycPRwf_0135	-	UDP-N-acetylmuramyl-tripeptide synthetase
136	 50.33	+1	163891..165408	+	505	148651953	-	PsycPRwf_0136	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
137	 46.26	0	165724..166845	+	373	148651954	-	PsycPRwf_0137	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
138	 49.53	+1	167017..167979	+	320	148651955	-	PsycPRwf_0138	-	rRNA (guanine-N(1)-)-methyltransferase
139	 51.22	+1	168080..169018	-	312	148651956	-	PsycPRwf_0139	-	tyrosine recombinase XerD
140	 47.62	0	169059..169352	-	97	148651957	-	PsycPRwf_0140	-	SirA family protein
141	 42.46	-1	169445..170551	-	368	148651958	-	PsycPRwf_0141	-	IS605 family transposase OrfB
142	 47.31	0	170628..171128	-	166	148651959	-	PsycPRwf_0142	-	hypothetical protein
143	 51.31	+1	171218..171751	-	177	148651960	-	PsycPRwf_0143	-	Holliday junction resolvase YqgF
144	 50.44	+1	171889..172455	-	188	148651961	-	PsycPRwf_0144	-	hypothetical protein
145	 50.00	+1	172579..174390	-	603	148651962	-	PsycPRwf_0145	-	DNA repair protein RecN
146	 45.35	0	175039..175371	+	110	148651963	-	PsycPRwf_0146	-	hypothetical protein
147	 52.42	+1	175574..176359	+	261	148651964	-	PsycPRwf_0147	-	RNA methyltransferase
148	 49.38	+1	176463..177110	-	215	148651965	-	PsycPRwf_0148	-	dephospho-CoA kinase
149	 49.84	+1	177662..178582	-	306	148651966	-	PsycPRwf_0149	-	peptidase A24A domain-containing protein
150	 48.99	0	178666..179898	-	410	148651967	-	PsycPRwf_0150	-	type II secretion system protein
151	 49.64	+1	179959..181221	-	420	148651968	-	PsycPRwf_0151	-	type II secretion system protein E
152	 48.62	0	181557..182354	+	265	148651969	-	PsycPRwf_0152	-	Triose-phosphate isomerase
153	 49.69	+1	182520..182837	+	105	148651970	secG	PsycPRwf_0153	-	preprotein translocase subunit SecG
154	 45.11	0	183800..184300	+	166	148651971	-	PsycPRwf_0155	-	hypothetical protein
155	 43.88	0	184592..186079	+	495	148651972	nusA	PsycPRwf_0156	-	transcription elongation factor NusA
156	 47.50	0	186097..188814	+	905	148651973	infB	PsycPRwf_0157	-	translation initiation factor IF-2
157	 45.86	0	189011..189433	+	140	148651974	-	PsycPRwf_0158	-	ribosome-binding factor A
158	 47.73	0	189456..190490	+	344	148651975	-	PsycPRwf_0159	-	tRNA pseudouridine synthase B
159	 42.61	0	191213..191740	+	175	148651976	-	PsycPRwf_0160	-	ThiJ/PfpI domain-containing protein
160	 42.22	-1	191834..192013	+	59	148651977	-	PsycPRwf_0161	-	hypothetical protein
161	 50.62	+1	192085..192246	+	53	148651978	-	PsycPRwf_0162	-	hypothetical protein
162	 42.70	0	192402..192668	+	88	148651979	rpsO	PsycPRwf_0163	-	30S ribosomal protein S15
163	 46.24	0	193089..195203	+	704	148651980	-	PsycPRwf_0164	-	polynucleotide phosphorylase/polyadenylase
164	 45.64	0	196042..198876	-	944	148651981	-	PsycPRwf_0165	-	glycerol-3-phosphate acyltransferase
165	 47.99	0	199482..200375	+	297	148651982	-	PsycPRwf_0166	-	palmitoyl-CoA hydrolase
166	 50.82	+1	200529..201866	-	445	148651983	-	PsycPRwf_0167	-	lytic murein transglycosylase
167	 48.94	0	202029..203303	-	424	148651984	-	PsycPRwf_0168	-	A/G-specific adenine glycosylase
168	 47.43	0	203433..204404	-	323	148651985	rbgA	PsycPRwf_0169	-	ribosomal biogenesis GTPase
169	 49.80	+1	204627..205367	-	246	148651986	-	PsycPRwf_0170	-	dienelactone hydrolase
170	 51.15	+1	205637..206113	+	158	148651987	-	PsycPRwf_0171	-	hypothetical protein
171	 46.97	0	206272..207525	-	417	148651988	-	PsycPRwf_0172	-	Rh family protein/ammonium transporter
172	 44.25	0	207634..207972	-	112	148651989	-	PsycPRwf_0173	-	nitrogen regulatory protein P-II
173	 49.48	+1	208359..209219	-	286	148651990	-	PsycPRwf_0174	-	UspA domain-containing protein
174	 48.17	0	209376..210878	-	500	148651991	-	PsycPRwf_0175	-	sulphate transporter
175	 50.00	+1	211558..213015	+	485	148651992	murD	PsycPRwf_0176	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
176	 47.23	0	213137..214345	+	402	148651993	-	PsycPRwf_0177	-	cell cycle protein
177	 42.01	-1	214403..215509	-	368	148651994	-	PsycPRwf_0178	-	IS605 family transposase OrfB
178	 51.33	+1	215789..216727	-	312	148651995	-	PsycPRwf_0179	-	glutamate--tRNA ligase
179	 43.45	0	216759..217193	-	144	148651996	-	PsycPRwf_0180	-	TraR/DksA family transcriptional regulator
180	 46.43	0	217357..218379	-	340	148651997	-	PsycPRwf_0181	-	calcineurin phosphoesterase C-terminal domain-containing protein
181	 51.32	+1	218419..219213	-	264	148651998	-	PsycPRwf_0182	-	ABC-3 protein
182	 50.24	+1	219327..220154	-	275	148651999	-	PsycPRwf_0183	-	ABC transporter related
183	 48.88	0	220278..220856	-	192	148652000	-	PsycPRwf_0184	-	ferric uptake regulator family protein
184	 49.08	0	221384..222361	+	325	148652001	-	PsycPRwf_0185	-	periplasmic solute binding protein
185	 41.24	-1	222498..222965	+	155	148652002	-	PsycPRwf_0186	-	hypothetical protein
186	 41.06	-1	223321..224187	+	288	148652003	-	PsycPRwf_0187	-	F0F1 ATP synthase subunit A
187	 43.90	0	224222..224467	+	81	148652004	-	PsycPRwf_0188	-	F0F1 ATP synthase subunit C
188	 43.95	0	224572..225042	+	156	148652005	-	PsycPRwf_0189	-	F0F1 ATP synthase subunit B
189	 43.17	0	225257..225886	+	209	148652006	-	PsycPRwf_0190	-	F0F1 ATP synthase subunit delta
190	 44.60	0	226051..227595	+	514	148652007	-	PsycPRwf_0191	-	F0F1 ATP synthase subunit alpha
45.93	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.