IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1306	 47.73	0	1616513..1619464	-	983	148653123	-	PsycPRwf_1321	-	hypothetical protein
1307	 37.34	-2	1619547..1620245	-	232	148653124	-	PsycPRwf_1322	-	LrgB family protein
1308	 38.01	-2	1620255..1620746	-	163	148653125	-	PsycPRwf_1323	-	LrgA family protein
1309	 38.10	-2	1620882..1621763	+	293	148653126	-	PsycPRwf_1324	-	LysR family transcriptional regulator
1310	 43.46	0	1621773..1625111	-	1112	148653127	-	PsycPRwf_1325	-	type III restriction enzyme, res subunit
1311	 34.50	-2	1625154..1626095	-	313	148653128	-	PsycPRwf_1326	-	hypothetical protein
1312	 37.35	-2	1626119..1627414	-	431	148653129	-	PsycPRwf_1327	-	restriction modification system DNA specificity subunit
1313	 44.36	0	1627414..1629834	-	806	148653130	-	PsycPRwf_1328	-	N-6 DNA methylase
1314	 42.68	0	1630037..1630924	-	295	148653131	-	PsycPRwf_1329	-	hypothetical protein
1315	 41.45	-1	1630924..1631613	-	229	148653132	-	PsycPRwf_1330	-	hypothetical protein
1316	 45.41	0	1631735..1632181	-	148	148653133	-	PsycPRwf_1331	-	VRR-NUC
1317	 43.94	0	1632420..1632683	-	87	148653134	-	PsycPRwf_1332	-	hypothetical protein
1318	 46.62	0	1632674..1633132	-	152	148653135	-	PsycPRwf_1333	-	hypothetical protein
1319	 44.74	0	1633147..1633707	-	186	148653136	-	PsycPRwf_1334	-	hypothetical protein
1320	 37.63	-2	1633724..1634608	-	294	148653137	-	PsycPRwf_1335	-	hypothetical protein
1321	 41.72	-1	1634646..1635110	-	154	148653138	-	PsycPRwf_1336	-	hypothetical protein
1322	 44.64	0	1635111..1635455	-	114	148653139	-	PsycPRwf_1337	-	hypothetical protein
1323	 39.22	-1	1635458..1635661	-	67	148653140	-	PsycPRwf_1338	-	hypothetical protein
1324	 43.79	0	1635760..1636419	+	219	148653141	-	PsycPRwf_1339	-	putative prophage repressor
1325	 35.23	-2	1636655..1637497	+	280	148653142	-	PsycPRwf_1340	-	hypothetical protein
1326	 37.21	-2	1637501..1638403	+	300	148653143	-	PsycPRwf_1341	-	hypothetical protein
1327	 35.62	-2	1638533..1639057	+	174	148653144	-	PsycPRwf_1342	-	hypothetical protein
1328	 40.32	-1	1639382..1640698	+	438	148653145	-	PsycPRwf_1343	-	Na+/H+ antiporter NhaC
1329	 38.99	-2	1641286..1641621	+	111	148653146	-	PsycPRwf_1344	-	hypothetical protein
1330	 43.95	0	1641944..1642960	+	338	148653147	-	PsycPRwf_1345	-	Phage-related protein endonuclease-like protein
1331	 36.61	-2	1642960..1643325	+	121	148653148	-	PsycPRwf_1346	-	hypothetical protein
1332	 44.38	0	1643318..1644286	+	322	148653149	-	PsycPRwf_1347	-	hypothetical protein
1333	 39.17	-1	1644347..1645168	+	273	148653150	-	PsycPRwf_1348	-	hypothetical protein
1334	 43.73	0	1645169..1645495	+	108	148653151	-	PsycPRwf_1349	-	hypothetical protein
1335	 41.04	-1	1645933..1646568	+	211	148653152	-	PsycPRwf_1350	-	hypothetical protein
1336	 41.32	-1	1647279..1648430	-	383	148653153	-	PsycPRwf_1351	-	hypothetical protein
1337	 41.05	-1	1648437..1648721	+	94	148653154	-	PsycPRwf_1352	-	hypothetical protein
1338	 40.66	-1	1648962..1650053	-	363	148653155	-	PsycPRwf_1353	-	5-methylcytosine-specific restriction enzyme subunit McrC
1339	 35.90	-2	1650055..1650249	-	64	148653156	-	PsycPRwf_1354	-	hypothetical protein
1340	 41.41	-1	1650348..1650644	+	98	148653157	-	PsycPRwf_1355	-	transposase IS3/IS911 family protein
1341	 43.86	0	1650888..1651742	-	284	148653158	-	PsycPRwf_1356	-	integrase catalytic subunit
1342	 41.41	-1	1651757..1652053	-	98	148653159	-	PsycPRwf_1357	-	transposase IS3/IS911 family protein
1343	 42.74	0	1652166..1652792	+	208	148653160	-	PsycPRwf_1358	-	integrase catalytic subunit
1344	 38.36	-2	1652835..1654802	-	655	148653161	-	PsycPRwf_1359	-	ATPase
1345	 35.13	-2	1655094..1655705	+	203	148653162	-	PsycPRwf_1360	-	hypothetical protein
1346	 44.26	0	1656069..1663058	-	2329	148653163	-	PsycPRwf_1361	-	hypothetical protein
1347	 35.18	-2	1663134..1663892	-	252	148653164	-	PsycPRwf_1362	-	integrase catalytic subunit
1348	 36.46	-2	1663961..1664503	-	180	148653165	-	PsycPRwf_1363	-	hypothetical protein
1349	 43.87	0	1664569..1664976	+	135	148653166	-	PsycPRwf_1364	-	transposase IS3/IS911 family protein
1350	 47.25	0	1664973..1665317	+	114	148653167	-	PsycPRwf_1365	-	IS66 Orf2 family protein
1351	 46.49	0	1665360..1667099	+	579	148653168	-	PsycPRwf_1366	-	transposase IS66
1352	 48.75	0	1667116..1677306	-	3396	148653169	-	PsycPRwf_1367	-	putative outer membrane adhesin like proteiin
1353	 41.10	-1	1677964..1678491	-	175	148653170	-	PsycPRwf_1368	-	redoxin domain-containing protein
1354	 47.54	0	1678685..1680211	+	508	148653171	xseA	PsycPRwf_1369	-	exodeoxyribonuclease VII large subunit
1355	 42.28	-1	1680291..1680614	+	107	148653172	-	PsycPRwf_1370	-	hypothetical protein
1356	 42.75	0	1680778..1682136	+	452	148653173	-	PsycPRwf_1371	-	gluconate transporter
1357	 48.99	0	1682223..1683416	+	397	148653174	-	PsycPRwf_1372	-	glycerate kinase
1358	 48.87	0	1683526..1685379	+	617	148653175	-	PsycPRwf_1373	-	gamma-glutamyltransferase
1359	 47.32	0	1685403..1687175	-	590	148653176	-	PsycPRwf_1374	-	methionine-R-sulfoxide reductase
1360	 47.36	0	1687332..1688222	-	296	148653177	-	PsycPRwf_1375	-	ABC transporter related
1361	 49.00	0	1688267..1690225	-	652	148653178	-	PsycPRwf_1376	-	substrate-binding region of ABC-type glycine betaine transport system
1362	 47.96	0	1690450..1690866	-	138	148653179	-	PsycPRwf_1377	-	class I peptide chain release factor
1363	 45.86	0	1691028..1692440	-	470	148653180	-	PsycPRwf_1378	-	aldehyde dehydrogenase
1364	 46.19	0	1692635..1693513	-	292	148653181	-	PsycPRwf_1379	-	short-chain dehydrogenase/reductase SDR
1365	 47.26	0	1693750..1694553	+	267	148653182	-	PsycPRwf_1380	-	lipoate-protein ligase B
1366	 45.18	0	1694580..1695263	+	227	148653183	-	PsycPRwf_1381	-	hypothetical protein
1367	 51.92	+1	1695390..1697294	+	634	148653184	-	PsycPRwf_1382	-	dihydroxy-acid dehydratase
1368	 43.77	0	1697388..1697684	-	98	148653185	-	PsycPRwf_1383	-	hypothetical protein
1369	 45.67	0	1697831..1698292	+	153	148653186	-	PsycPRwf_1384	-	hypothetical protein
1370	 46.27	0	1698648..1699907	+	419	148653187	-	PsycPRwf_1385	-	sodium/hydrogen exchanger
1371	 47.87	0	1700016..1701377	-	453	148653188	-	PsycPRwf_1386	-	beta-lactamase
1372	 48.40	0	1701450..1701980	-	176	148653189	-	PsycPRwf_1387	-	hypothetical protein
1373	 44.04	0	1702115..1703011	-	298	148653190	-	PsycPRwf_1388	-	dehydratase
1374	 47.11	0	1703177..1704577	-	466	148653191	fabG	PsycPRwf_1389	-	3-ketoacyl-(acyl-carrier-protein) reductase
1375	 46.80	0	1705218..1707044	+	608	148653192	-	PsycPRwf_1390	-	acetyl-CoA acetyltransferase
1376	 48.62	0	1707155..1708279	-	374	148653193	-	PsycPRwf_1391	-	DNA-directed DNA polymerase
1377	 41.10	-1	1708335..1709441	-	368	148653194	-	PsycPRwf_1392	-	IS605 family transposase OrfB
1378	 48.31	0	1709589..1710416	-	275	148653195	-	PsycPRwf_1393	-	3-deoxy-manno-octulosonate cytidylyltransferase
1379	 49.47	+1	1710550..1711677	-	375	148653196	-	PsycPRwf_1394	-	tetraacyldisaccharide 4'-kinase
1380	 46.15	0	1711848..1713680	-	610	148653197	-	PsycPRwf_1395	-	lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
1381	 49.40	+1	1713809..1714897	-	362	148653198	-	PsycPRwf_1396	-	parB-like partition protein
1382	 47.03	0	1715138..1715911	-	257	148653199	-	PsycPRwf_1397	-	cobyrinic acid a,c-diamide synthase
1383	 42.92	0	1716031..1716708	-	225	148653200	-	PsycPRwf_1398	-	methyltransferase GidB
1384	 47.31	0	1716885..1719317	+	810	148653201	-	PsycPRwf_1399	-	peptidase S16, lon domain-containing protein
1385	 49.53	+1	1719425..1720492	+	355	148653202	-	PsycPRwf_1400	-	hypothetical protein
1386	 48.18	0	1720605..1721264	+	219	148653203	-	PsycPRwf_1401	-	hypothetical protein
1387	 43.27	0	1721356..1722351	-	331	148653204	-	PsycPRwf_1402	-	Ion transport protein
1388	 47.81	0	1722528..1724213	-	561	148653205	-	PsycPRwf_1403	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
1389	 47.31	0	1724342..1727167	-	941	148653206	aceE	PsycPRwf_1404	-	pyruvate dehydrogenase subunit E1
1390	 45.80	0	1727862..1728302	+	146	148653207	-	PsycPRwf_1405	-	hypothetical protein
1391	 43.34	0	1728378..1729496	-	372	148653208	-	PsycPRwf_1406	-	AFG1 family ATPase
1392	 48.65	0	1729553..1730218	-	221	148653209	-	PsycPRwf_1407	-	alpha/beta fold family hydrolase-like protein
1393	 46.61	0	1730681..1731064	+	127	148653210	-	PsycPRwf_1408	-	hypothetical protein
1394	 48.17	0	1731126..1732163	-	345	148653211	-	PsycPRwf_1409	-	binding-protein-dependent transport systems inner membrane component
1395	 45.79	0	1732165..1733232	-	355	148653212	-	PsycPRwf_1410	-	binding-protein-dependent transport systems inner membrane component
1396	 48.72	0	1733302..1734081	-	259	148653213	-	PsycPRwf_1411	-	hydroxyacylglutathione hydrolase
1397	 46.13	0	1734151..1736010	-	619	148653214	-	PsycPRwf_1412	-	extracellular solute-binding protein
1398	 46.95	0	1736047..1737192	-	381	148653215	-	PsycPRwf_1413	-	phosphoserine aminotransferase
1399	 48.09	0	1737306..1738118	-	270	148653216	-	PsycPRwf_1414	-	hypothetical protein
1400	 43.44	0	1738475..1739374	-	299	148653217	-	PsycPRwf_1415	-	NLPA lipoprotein
1401	 47.22	0	1739618..1740301	-	227	148653218	-	PsycPRwf_1416	-	binding-protein-dependent transport systems inner membrane component
1402	 45.49	0	1740305..1741069	-	254	148653219	-	PsycPRwf_1417	-	ABC transporter related
1403	 40.10	-1	1741312..1741518	-	68	148653220	-	PsycPRwf_1418	-	hypothetical protein
1404	 49.22	0	1741876..1743153	+	425	148653221	-	PsycPRwf_1419	-	phosphoribosylamine--glycine ligase
1405	 46.61	0	1743449..1744909	+	486	148653222	-	PsycPRwf_1420	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.