IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1174	 46.27	0	1447928..1450099	-	723	148652991	-	PsycPRwf_1185	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
1175	 49.05	0	1450197..1451405	-	402	148652992	-	PsycPRwf_1186	-	acetyl-CoA acetyltransferase
1176	 45.40	0	1451536..1452687	-	383	148652993	-	PsycPRwf_1187	-	acyl-CoA dehydrogenase domain-containing protein
1177	 42.44	-1	1452874..1453521	+	215	148652994	-	PsycPRwf_1188	-	TetR family transcriptional regulator
1178	 47.16	0	1454018..1455283	+	421	148652995	-	PsycPRwf_1189	-	phage integrase family protein
1179	 39.20	-1	1455303..1455677	-	124	148652996	-	PsycPRwf_1190	-	hypothetical protein
1180	 49.54	+1	1455956..1456282	-	108	148652997	-	PsycPRwf_1191	-	hypothetical protein
1181	 46.69	0	1456409..1457935	-	508	148652998	-	PsycPRwf_1192	-	aldehyde dehydrogenase
1182	 46.05	0	1458354..1459619	+	421	148652999	-	PsycPRwf_1193	-	manganese transporter NRAMP
1183	 45.95	0	1459730..1460989	+	419	148653000	-	PsycPRwf_1194	-	manganese transporter NRAMP
1184	 45.69	0	1461221..1461916	+	231	148653001	-	PsycPRwf_1195	-	hypothetical protein
1185	 47.66	0	1461964..1462926	+	320	148653002	-	PsycPRwf_1196	-	LysR family transcriptional regulator
1186	 46.53	0	1463221..1464114	+	297	148653003	prpB	PsycPRwf_1197	-	2-methylisocitrate lyase
1187	 48.63	0	1464312..1465442	+	376	148653004	-	PsycPRwf_1198	-	methylcitrate synthase
1188	 48.93	0	1465657..1468368	+	903	148653005	-	PsycPRwf_1199	-	aconitate hydratase
1189	 48.80	0	1468484..1469737	+	417	148653006	-	PsycPRwf_1200	-	putative AcnD-accessory protein PrpF
1190	 44.12	0	1469953..1471806	+	617	148653007	-	PsycPRwf_1201	-	ABC transporter related
1191	 44.50	0	1471868..1472458	+	196	148653008	-	PsycPRwf_1202	-	GCN5-related N-acetyltransferase
1192	 47.05	0	1472582..1473922	+	446	148653009	-	PsycPRwf_1203	-	hypothetical protein
1193	 44.09	0	1474076..1475023	+	315	148653010	-	PsycPRwf_1204	-	sterol desaturase-like protein
1194	 49.39	+1	1475125..1476687	+	520	148653011	-	PsycPRwf_1205	-	GTP-binding protein, HSR1-related
1195	 49.20	0	1476734..1477729	-	331	148653012	-	PsycPRwf_1206	-	arsenite-activated ATPase ArsA
1196	 47.57	0	1477771..1478037	-	88	148653013	-	PsycPRwf_1207	-	hypothetical protein
1197	 44.84	0	1478182..1479849	-	555	148653014	-	PsycPRwf_1208	-	carbon starvation protein CstA
1198	 39.49	-1	1480281..1480946	+	221	148653015	-	PsycPRwf_1209	-	hypothetical protein
1199	 42.15	-1	1481037..1481603	+	188	148653016	-	PsycPRwf_1210	-	hypoxanthine-guanine phosphoribosyltransferase
1200	 44.67	0	1481693..1484056	-	787	148653017	-	PsycPRwf_1211	-	exodeoxyribonuclease V, alpha subunit
1201	 46.36	0	1484140..1488630	-	1496	148653018	-	PsycPRwf_1212	-	UvrD/REP helicase
1202	 47.47	0	1488714..1493225	-	1503	148653019	-	PsycPRwf_1213	-	exonuclease V gamma subunit-like protein
1203	 45.91	0	1493539..1494309	-	256	148653020	-	PsycPRwf_1214	-	pseudouridine synthase
1204	 41.58	-1	1494419..1494697	-	92	148653021	-	PsycPRwf_1215	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1205	 43.67	0	1495159..1496367	+	402	148653022	-	PsycPRwf_1216	-	phage integrase family protein
1206	 38.45	-2	1496664..1497815	-	383	148653023	-	PsycPRwf_1217	-	hypothetical protein
1207	 38.39	-2	1497952..1499514	-	520	148653024	-	PsycPRwf_1218	-	Dyp-type peroxidase family protein
1208	 39.24	-1	1499732..1500307	-	191	148653025	-	PsycPRwf_1219	-	hypothetical protein
1209	 35.77	-2	1501558..1502418	+	286	148653026	-	PsycPRwf_1221	-	hypothetical protein
1210	 40.64	-1	1502508..1504862	-	784	148653027	-	PsycPRwf_1222	-	hypothetical protein
1211	 43.71	0	1504994..1505677	-	227	148653028	-	PsycPRwf_1223	-	hypothetical protein
1212	 42.20	-1	1506002..1506520	-	172	148653029	-	PsycPRwf_1224	-	hypothetical protein
1213	 41.19	-1	1506751..1507488	-	245	148653030	-	PsycPRwf_1225	-	hypothetical protein
1214	 45.73	0	1507485..1508339	-	284	148653031	-	PsycPRwf_1226	-	hypothetical protein
1215	 43.93	0	1508342..1510153	-	603	148653032	-	PsycPRwf_1227	-	hypothetical protein
1216	 38.70	-2	1510163..1511056	-	297	148653033	-	PsycPRwf_1228	-	hypothetical protein
1217	 43.43	0	1511074..1511370	+	98	148653034	-	PsycPRwf_1229	-	transposase IS3/IS911 family protein
1218	 45.05	0	1511421..1512239	+	272	148653035	-	PsycPRwf_1230	-	integrase catalytic subunit
1219	 46.61	0	1512763..1513899	-	378	148653036	-	PsycPRwf_1231	-	peptidase M14, carboxypeptidase A
1220	 47.56	0	1514141..1517752	+	1203	148653037	-	PsycPRwf_1232	-	DNA polymerase III, alpha subunit
1221	 41.67	-1	1518685..1519392	+	235	148653038	-	PsycPRwf_1233	-	isochorismatase hydrolase
1222	 44.44	0	1519521..1519745	+	74	148653039	-	PsycPRwf_1234	-	hypothetical protein
1223	 39.85	-1	1522178..1522960	-	260	148653040	-	PsycPRwf_1236	-	hypothetical protein
1224	 43.56	0	1522957..1524687	-	576	148653041	-	PsycPRwf_1237	-	hypothetical protein
1225	 43.60	0	1524754..1526418	-	554	148653042	-	PsycPRwf_1238	-	BCCT transporter
1226	 45.63	0	1526691..1527731	-	346	148653043	-	PsycPRwf_1239	-	peptidase M19, renal dipeptidase
1227	 46.39	0	1527816..1529270	-	484	148653044	-	PsycPRwf_1240	-	aldehyde dehydrogenase
1228	 45.80	0	1529401..1529793	-	130	148653045	-	PsycPRwf_1241	-	endoribonuclease L-PSP
1229	 43.76	0	1529990..1530871	+	293	148653046	-	PsycPRwf_1242	-	LysR family transcriptional regulator
1230	 47.27	0	1531006..1531866	+	286	148653047	-	PsycPRwf_1243	-	RNA methyltransferase
1231	 47.10	0	1531999..1532877	+	292	148653048	-	PsycPRwf_1244	-	serine O-acetyltransferase
1232	 43.53	0	1532930..1533547	-	205	148653049	-	PsycPRwf_1245	-	hypothetical protein
1233	 45.05	0	1533578..1533961	-	127	148653050	-	PsycPRwf_1246	-	dihydroneopterin aldolase
1234	 44.06	0	1534024..1534974	-	316	148653051	-	PsycPRwf_1247	-	transporter DMT superfamily protein
1235	 48.90	0	1535255..1537567	-	770	148653052	-	PsycPRwf_1248	-	3-phosphoshikimate 1-carboxyvinyltransferase
1236	 47.83	0	1537631..1538734	-	367	148653053	-	PsycPRwf_1249	-	histidinol-phosphate aminotransferase
1237	 45.17	0	1538813..1539961	-	382	148653054	-	PsycPRwf_1250	-	chorismate mutase
1238	 45.01	0	1540305..1541255	+	316	148653055	-	PsycPRwf_1251	-	transaldolase B
1239	 46.60	0	1541341..1541913	-	190	148653056	-	PsycPRwf_1252	-	adenine phosphoribosyltransferase
1240	 46.06	0	1542283..1542447	+	54	148653057	-	PsycPRwf_1253	-	rubredoxin-type Fe(Cys)4 protein
1241	 47.40	0	1542500..1543459	+	319	148653058	-	PsycPRwf_1254	-	alpha/beta hydrolase fold
1242	 44.18	0	1543621..1544625	+	334	148653059	-	PsycPRwf_1255	-	alpha/beta hydrolase fold
1243	 41.73	-1	1544750..1545154	-	134	148653060	-	PsycPRwf_1256	-	hypothetical protein
1244	 48.55	0	1545375..1546616	-	413	148653061	argJ	PsycPRwf_1257	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1245	 43.75	0	1546676..1547491	-	271	148653062	-	PsycPRwf_1258	-	exonuclease III
1246	 47.38	0	1547579..1548226	-	215	148653063	-	PsycPRwf_1259	-	pyridoxamine 5'-phosphate oxidase
1247	 47.12	0	1548351..1549706	-	451	148653064	-	PsycPRwf_1260	-	phosphoglucosamine mutase
1248	 47.32	0	1549910..1551382	-	490	148653065	-	PsycPRwf_1261	-	inosine-5'-monophosphate dehydrogenase
1249	 47.29	0	1551736..1553619	-	627	148653066	-	PsycPRwf_1262	-	MscS mechanosensitive ion channel
1250	 47.50	0	1553778..1555295	-	505	148653067	-	PsycPRwf_1263	-	cysteinyl-tRNA synthetase
1251	 44.77	0	1555465..1556076	+	203	148653068	-	PsycPRwf_1264	-	ATP--cobalamin adenosyltransferase
1252	 48.29	0	1556187..1557149	-	320	148653069	-	PsycPRwf_1265	-	hypothetical protein
1253	 45.81	0	1557484..1558413	+	309	148653070	-	PsycPRwf_1266	-	glycerophosphoryl diester phosphodiesterase
1254	 45.42	0	1558872..1560062	+	396	148653071	-	PsycPRwf_1267	-	stearoyl-CoA 9-desaturase
1255	 47.78	0	1560379..1561956	+	525	148653072	-	PsycPRwf_1268	-	hypothetical protein
1256	 44.44	0	1562236..1564575	+	779	148653073	-	PsycPRwf_1269	-	malic enzyme
1257	 38.10	-2	1564645..1565295	-	216	148653074	-	PsycPRwf_1270	-	BLUF domain-containing protein
1258	 45.65	0	1565497..1566738	+	413	148653075	-	PsycPRwf_1271	-	tRNA cytidylyltransferase
1259	 39.67	-1	1567080..1568357	+	425	148653076	-	PsycPRwf_1272	-	phage integrase family protein
1260	 34.70	-2	1569287..1569505	+	72	148653077	-	PsycPRwf_1274	-	hypothetical protein
1261	 35.19	-2	1569596..1570456	+	286	148653078	-	PsycPRwf_1275	-	hypothetical protein
1262	 40.68	-1	1570549..1572903	-	784	148653079	-	PsycPRwf_1276	-	hypothetical protein
1263	 42.98	0	1573035..1573718	-	227	148653080	-	PsycPRwf_1277	-	hypothetical protein
1264	 40.85	-1	1574043..1574561	-	172	148653081	-	PsycPRwf_1278	-	hypothetical protein
1265	 42.01	-1	1574792..1575529	-	245	148653082	-	PsycPRwf_1279	-	hypothetical protein
1266	 45.15	0	1575526..1576380	-	284	148653083	-	PsycPRwf_1280	-	hypothetical protein
1267	 43.65	0	1576383..1578194	-	603	148653084	-	PsycPRwf_1281	-	hypothetical protein
1268	 40.24	-1	1578204..1580360	-	718	148653085	-	PsycPRwf_1282	-	hypothetical protein
1269	 47.37	0	1581011..1581295	-	94	148653086	-	PsycPRwf_1283	-	hypothetical protein
1270	 40.21	-1	1581305..1581973	-	222	148653087	-	PsycPRwf_1284	-	hypothetical protein
1271	 45.98	0	1581973..1583601	-	542	148653088	-	PsycPRwf_1285	-	hypothetical protein
1272	 48.21	0	1583610..1584281	-	223	148653089	-	PsycPRwf_1286	-	hypothetical protein
1273	 43.78	0	1584278..1585186	-	302	148653090	-	PsycPRwf_1287	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.