IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1048	 47.25	0	1277513..1277857	+	114	148652865	-	PsycPRwf_1058	-	IS66 Orf2 family protein
1049	 46.44	0	1277900..1279639	+	579	148652866	-	PsycPRwf_1059	-	transposase IS66
1050	 44.28	0	1279895..1280881	-	328	148652867	-	PsycPRwf_1060	-	glutathione S-transferase-like protein
1051	 45.26	0	1281296..1282444	+	382	148652868	potA	PsycPRwf_1061	-	putrescine/spermidine ABC transporter ATPase protein
1052	 44.12	0	1282413..1283339	+	308	148652869	-	PsycPRwf_1062	-	binding-protein-dependent transport systems inner membrane component
1053	 44.66	0	1283349..1284125	+	258	148652870	potC	PsycPRwf_1063	-	spermidine/putrescine ABC transporter membrane protein
1054	 46.22	0	1284135..1285259	+	374	148652871	-	PsycPRwf_1064	-	extracellular solute-binding protein
1055	 41.42	-1	1285338..1285955	+	205	148652872	-	PsycPRwf_1065	-	membrane protein-like protein
1056	 46.22	0	1286056..1286769	-	237	148652873	-	PsycPRwf_1066	-	exonuclease, RNase T and DNA polymerase III
1057	 44.87	0	1286931..1288022	-	363	148652874	-	PsycPRwf_1067	-	hypothetical protein
1058	 39.89	-1	1288253..1288618	+	121	148652875	-	PsycPRwf_1068	-	hypothetical protein
1059	 48.33	0	1288778..1289704	+	308	148652876	-	PsycPRwf_1069	-	hypothetical protein
1060	 41.19	-1	1290087..1291193	+	368	148652877	-	PsycPRwf_1070	-	IS605 family transposase OrfB
1061	 47.35	0	1291263..1292339	+	358	148652878	-	PsycPRwf_1071	-	iron-containing alcohol dehydrogenase
1062	 42.97	0	1292502..1293248	-	248	148652879	-	PsycPRwf_1072	-	hypothetical protein
1063	 47.45	0	1293782..1295686	+	634	148652880	-	PsycPRwf_1073	-	hypothetical protein
1064	 45.21	0	1295785..1297560	+	591	148652881	-	PsycPRwf_1074	-	hypothetical protein
1065	 44.78	0	1297742..1298737	+	331	148652882	-	PsycPRwf_1075	-	phosphoesterase, PA-phosphatase related
1066	 49.29	0	1298791..1300050	-	419	148652883	-	PsycPRwf_1076	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
1067	 43.68	0	1300280..1300714	-	144	148652884	-	PsycPRwf_1077	-	hypothetical protein
1068	 40.83	-1	1300724..1301830	+	368	148652885	-	PsycPRwf_1078	-	IS605 family transposase OrfB
1069	 45.31	0	1301804..1302421	-	205	148652886	-	PsycPRwf_1079	-	LysR family transcriptional regulator
1070	 45.46	0	1302634..1304406	+	590	148652887	-	PsycPRwf_1080	-	D-lactate dehydrogenase
1071	 47.76	0	1304575..1306245	+	556	148652888	-	PsycPRwf_1081	-	AMP-dependent synthetase and ligase
1072	 47.96	0	1306463..1307734	+	423	148652889	-	PsycPRwf_1082	-	enoyl-CoA hydratase/isomerase
1073	 46.24	0	1307949..1308986	+	345	148652890	-	PsycPRwf_1083	-	amino acid aldolase or racemase-like protein
1074	 46.49	0	1309145..1310482	+	445	148652891	-	PsycPRwf_1084	-	FAD linked oxidase domain-containing protein
1075	 48.32	0	1310612..1311892	+	426	148652892	-	PsycPRwf_1085	-	hypothetical protein
1076	 39.47	-1	1312478..1313422	+	314	148652893	-	PsycPRwf_1086	-	OmpA/MotB domain-containing protein
1077	 42.81	0	1313661..1328957	+	5098	148652894	-	PsycPRwf_1087	-	putative outer membrane adhesin like proteiin
1078	 46.44	0	1329169..1330908	-	579	148652895	-	PsycPRwf_1088	-	transposase IS66
1079	 47.25	0	1330951..1331295	-	114	148652896	-	PsycPRwf_1089	-	IS66 Orf2 family protein
1080	 44.12	0	1331292..1331699	-	135	148652897	-	PsycPRwf_1090	-	transposase IS3/IS911 family protein
1081	 35.18	-2	1331737..1332495	-	252	148652898	-	PsycPRwf_1091	-	integrase catalytic subunit
1082	 36.46	-2	1332564..1333106	-	180	148652899	-	PsycPRwf_1092	-	hypothetical protein
1083	 42.70	0	1333250..1333879	-	209	148652900	-	PsycPRwf_1093	-	glutathione S-transferase domain-containing protein
1084	 47.49	0	1333906..1334583	-	225	148652901	-	PsycPRwf_1094	-	ThiJ/PfpI domain-containing protein
1085	 47.61	0	1334642..1335706	-	354	148652902	-	PsycPRwf_1095	-	alcohol dehydrogenase
1086	 44.75	0	1335942..1337150	-	402	148652903	-	PsycPRwf_1096	-	iron-containing alcohol dehydrogenase
1087	 46.02	0	1337652..1338242	-	196	148652904	-	PsycPRwf_1097	-	TetR family transcriptional regulator
1088	 47.42	0	1338861..1343738	+	1625	148652905	-	PsycPRwf_1098	-	NAD-glutamate dehydrogenase
1089	 46.82	0	1343891..1347931	-	1346	148652906	-	PsycPRwf_1099	-	SMC domain-containing protein
1090	 50.31	+1	1348049..1349662	-	537	148652907	-	PsycPRwf_1100	-	nuclease SbcCD, D subunit
1091	 50.29	+1	1349876..1351078	+	400	148652908	-	PsycPRwf_1101	-	methyltransferase small
1092	 47.06	0	1351315..1352079	+	254	148652909	-	PsycPRwf_1102	-	ABC transporter related
1093	 50.20	+1	1352222..1353199	+	325	148652910	-	PsycPRwf_1103	-	periplasmic binding protein
1094	 52.09	+1	1353210..1355294	+	694	148652911	-	PsycPRwf_1104	-	iron-hydroxamate transporter permease subunit
1095	 47.88	0	1355315..1356799	+	494	148652912	-	PsycPRwf_1105	-	major facilitator transporter
1096	 46.47	0	1357161..1359428	+	755	148652913	-	PsycPRwf_1106	-	TonB-dependent receptor, plug
1097	 51.37	+1	1359615..1361078	-	487	148652914	-	PsycPRwf_1107	-	uroporphyrin-III C-methyltransferase
1098	 45.08	0	1361295..1361924	-	209	148652915	-	PsycPRwf_1108	-	phosphoadenosine phosphosulfate reductase
1099	 50.75	+1	1362025..1362627	-	200	148652916	-	PsycPRwf_1109	-	hypothetical protein
1100	 47.89	0	1362620..1364302	-	560	148652917	-	PsycPRwf_1110	-	nitrite and sulphite reductase 4Fe-4S region
1101	 49.29	0	1364602..1365861	+	419	148652918	-	PsycPRwf_1111	-	sulfate adenylyltransferase
1102	 45.33	0	1366402..1366776	+	124	148652919	-	PsycPRwf_1112	-	hypothetical protein
1103	 51.64	+1	1367055..1368491	+	478	148652920	-	PsycPRwf_1113	-	phospholipase D/transphosphatidylase
1104	 47.32	0	1368634..1369398	-	254	148652921	-	PsycPRwf_1114	-	hypothetical protein
1105	 46.18	0	1369395..1372718	-	1107	148652922	-	PsycPRwf_1115	-	HsdR family type I site-specific deoxyribonuclease
1106	 38.31	-2	1372931..1373452	-	173	148652923	-	PsycPRwf_1116	-	hypothetical protein
1107	 41.38	-1	1373670..1373930	+	86	148652924	-	PsycPRwf_1117	-	transposase IS3/IS911 family protein
1108	 42.13	-1	1374017..1374391	+	124	148652925	-	PsycPRwf_1118	-	hypothetical protein
1109	 41.41	-1	1374444..1374740	+	98	148652926	-	PsycPRwf_1119	-	transposase IS3/IS911 family protein
1110	 43.86	0	1374755..1375609	+	284	148652927	-	PsycPRwf_1120	-	integrase catalytic subunit
1111	 36.81	-2	1375724..1376701	-	325	148652928	-	PsycPRwf_1121	-	hypothetical protein
1112	 42.45	-1	1377399..1377815	-	138	148652929	-	PsycPRwf_1123	-	hypothetical protein
1113	 38.87	-2	1377817..1379784	-	655	148652930	-	PsycPRwf_1124	-	hypothetical protein
1114	 37.39	-2	1379784..1381385	-	533	148652931	-	PsycPRwf_1125	-	phage integrase family protein
1115	 39.04	-2	1381372..1382562	-	396	148652932	-	PsycPRwf_1126	-	phage integrase family protein
1116	 49.06	0	1382751..1383659	-	302	148652933	-	PsycPRwf_1127	-	N-6 DNA methylase
1117	 38.61	-2	1383709..1384182	-	157	148652934	-	PsycPRwf_1128	-	hypothetical protein
1118	 47.85	0	1384631..1385002	+	123	148652935	-	PsycPRwf_1129	-	hypothetical protein
1119	 53.79	+2	1385158..1385685	-	175	148652936	-	PsycPRwf_1130	-	hypothetical protein
1120	 49.66	+1	1385771..1386358	-	195	148652937	-	PsycPRwf_1131	-	hypothetical protein
1121	 47.54	0	1386841..1387959	+	372	148652938	-	PsycPRwf_1132	-	sulfate ABC transporter, periplasmic sulfate-binding protein
1122	 50.18	+1	1388212..1389351	+	379	148652939	-	PsycPRwf_1133	-	sulfate ABC transporter, periplasmic sulfate-binding protein
1123	 49.43	+1	1389590..1390471	+	293	148652940	-	PsycPRwf_1134	-	sulfate ABC transporter, inner membrane subunit CysT
1124	 51.44	+1	1390578..1391516	+	312	148652941	-	PsycPRwf_1135	-	sulfate ABC transporter, inner membrane subunit CysW
1125	 49.38	+1	1391637..1392359	+	240	148652942	-	PsycPRwf_1136	-	sulfate ABC transporter, ATPase subunit
1126	 51.19	+1	1392552..1393475	-	307	148652943	-	PsycPRwf_1137	-	UspA domain-containing protein
1127	 48.89	0	1393640..1393909	-	89	148652944	-	PsycPRwf_1138	-	regulatory protein, ArsR
1128	 48.89	0	1394235..1395539	+	434	148652945	-	PsycPRwf_1139	-	arsenical pump membrane protein
1129	 47.83	0	1395812..1396342	+	176	148652946	-	PsycPRwf_1140	-	protein tyrosine phosphatase
1130	 47.73	0	1396508..1397257	+	249	148652947	-	PsycPRwf_1141	-	arsenate resistance ArsH
1131	 45.89	0	1397309..1397746	+	145	148652948	-	PsycPRwf_1142	-	MgtC/SapB transporter
1132	 46.94	0	1397747..1398415	+	222	148652949	-	PsycPRwf_1143	-	hypothetical protein
1133	 46.70	0	1398523..1399869	-	448	148652950	-	PsycPRwf_1144	-	glutamate dehydrogenase
1134	 46.10	0	1400106..1401554	-	482	148652951	-	PsycPRwf_1145	-	EmrB/QacA family drug resistance transporter
1135	 46.01	0	1401765..1402616	+	283	148652952	-	PsycPRwf_1146	-	putative glutathione S-transferase YghU
1136	 49.00	0	1403100..1404650	+	516	148652953	-	PsycPRwf_1147	-	DEAD/DEAH box helicase domain-containing protein
1137	 42.86	0	1404831..1405544	+	237	148652954	-	PsycPRwf_1148	-	DSBA oxidoreductase
1138	 51.47	+1	1405630..1407129	-	499	148652955	-	PsycPRwf_1149	-	L-serine dehydratase 1
1139	 47.87	0	1407685..1408530	+	281	148652956	-	PsycPRwf_1150	-	extracellular solute-binding protein
1140	 47.97	0	1408527..1409264	+	245	148652957	-	PsycPRwf_1151	-	polar amino acid ABC transporter, inner membrane subunit
1141	 48.92	0	1409307..1410050	+	247	148652958	-	PsycPRwf_1152	-	ABC transporter related
1142	 49.92	+1	1410148..1410798	-	216	148652959	-	PsycPRwf_1153	-	glutamine amidotransferase of anthranilate synthase
1143	 48.97	0	1410899..1412311	-	470	148652960	-	PsycPRwf_1154	-	anthranilate synthase
1144	 49.04	0	1412423..1412734	-	103	148652961	-	PsycPRwf_1155	-	Trp operon repressor
1145	 45.90	0	1412904..1413500	-	198	148652962	-	PsycPRwf_1156	-	hypothetical protein
1146	 48.81	0	1413620..1415881	-	753	148652963	-	PsycPRwf_1157	-	ornithine decarboxylase
1147	 48.65	0	1416252..1417511	+	419	148652964	-	PsycPRwf_1158	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.