IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1020	 45.55	0	1236035..1237270	-	411	148652837	-	PsycPRwf_1030	-	hypothetical protein
1021	 46.30	0	1237461..1238486	+	341	148652838	-	PsycPRwf_1031	-	LysR family transcriptional regulator
1022	 47.36	0	1238585..1239739	-	384	148652839	-	PsycPRwf_1032	-	S-(hydroxymethyl)glutathione dehydrogenase
1023	 46.38	0	1239858..1240754	+	298	148652840	-	PsycPRwf_1033	-	LysR family transcriptional regulator
1024	 46.37	0	1240760..1241626	-	288	148652841	-	PsycPRwf_1034	-	MscS mechanosensitive ion channel
1025	 51.37	+1	1241818..1243275	-	485	148652842	-	PsycPRwf_1035	-	aminoacyl-histidine dipeptidase
1026	 41.03	-1	1243625..1243858	-	77	148652843	-	PsycPRwf_1036	-	hypothetical protein
1027	 46.18	0	1244069..1244644	-	191	148652844	-	PsycPRwf_1037	-	glyoxalase/bleomycin resistance protein/dioxygenase
1028	 48.45	0	1244680..1245969	-	429	148652845	-	PsycPRwf_1038	-	fumarylacetoacetase
1029	 47.93	0	1246146..1247111	-	321	148652846	-	PsycPRwf_1039	-	LysR family transcriptional regulator
1030	 48.53	0	1247267..1248385	+	372	148652847	-	PsycPRwf_1040	-	4-hydroxyphenylpyruvate dioxygenase
1031	 47.87	0	1248472..1249269	+	265	148652848	phhA	PsycPRwf_1041	-	phenylalanine 4-monooxygenase
1032	 47.37	0	1249332..1249673	+	113	148652849	-	PsycPRwf_1042	-	transcriptional coactivator/pterin dehydratase
1033	 46.21	0	1249751..1251163	+	470	148652850	-	PsycPRwf_1043	-	Na+/H+ antiporter NhaC
1034	 46.71	0	1251271..1252107	-	278	148652851	-	PsycPRwf_1044	-	phosphoesterase, PA-phosphatase related
1035	 46.71	0	1252136..1252606	-	156	148652852	-	PsycPRwf_1045	-	diacylglycerol kinase
1036	 44.34	0	1252822..1254156	-	444	148652853	-	PsycPRwf_1046	-	integral membrane sensor signal transduction histidine kinase
1037	 45.11	0	1254202..1254897	-	231	148652854	-	PsycPRwf_1047	-	two component transcriptional regulator
1038	 43.37	0	1254996..1256738	-	580	148652855	-	PsycPRwf_1048	-	sulfatase
1039	 41.96	-1	1257384..1258241	+	285	148652856	-	PsycPRwf_1049	-	Outer membrane protein and related peptidoglycan-associated (lipo)protein-like protein
1040	 44.55	0	1258353..1259297	+	314	148652857	-	PsycPRwf_1050	-	hypothetical protein
1041	 50.27	+1	1259294..1272586	+	4430	148652858	-	PsycPRwf_1051	-	hypothetical protein
1042	 41.41	-1	1272639..1272935	+	98	148652859	-	PsycPRwf_1052	-	transposase IS3/IS911 family protein
1043	 43.86	0	1272950..1273804	+	284	148652860	-	PsycPRwf_1053	-	integrase catalytic subunit
1044	 37.69	-2	1273804..1275387	+	527	148652861	-	PsycPRwf_1054	-	hypothetical protein
1045	 35.18	-2	1275674..1276432	-	252	148652862	-	PsycPRwf_1055	-	integrase catalytic subunit
1046	 36.46	-2	1276501..1277043	-	180	148652863	-	PsycPRwf_1056	-	hypothetical protein
1047	 44.12	0	1277109..1277516	+	135	148652864	-	PsycPRwf_1057	-	transposase IS3/IS911 family protein
1048	 47.25	0	1277513..1277857	+	114	148652865	-	PsycPRwf_1058	-	IS66 Orf2 family protein
1049	 46.44	0	1277900..1279639	+	579	148652866	-	PsycPRwf_1059	-	transposase IS66
1050	 44.28	0	1279895..1280881	-	328	148652867	-	PsycPRwf_1060	-	glutathione S-transferase-like protein
1051	 45.26	0	1281296..1282444	+	382	148652868	potA	PsycPRwf_1061	-	putrescine/spermidine ABC transporter ATPase protein
1052	 44.12	0	1282413..1283339	+	308	148652869	-	PsycPRwf_1062	-	binding-protein-dependent transport systems inner membrane component
1053	 44.66	0	1283349..1284125	+	258	148652870	potC	PsycPRwf_1063	-	spermidine/putrescine ABC transporter membrane protein
1054	 46.22	0	1284135..1285259	+	374	148652871	-	PsycPRwf_1064	-	extracellular solute-binding protein
1055	 41.42	-1	1285338..1285955	+	205	148652872	-	PsycPRwf_1065	-	membrane protein-like protein
1056	 46.22	0	1286056..1286769	-	237	148652873	-	PsycPRwf_1066	-	exonuclease, RNase T and DNA polymerase III
1057	 44.87	0	1286931..1288022	-	363	148652874	-	PsycPRwf_1067	-	hypothetical protein
1058	 39.89	-1	1288253..1288618	+	121	148652875	-	PsycPRwf_1068	-	hypothetical protein
1059	 48.33	0	1288778..1289704	+	308	148652876	-	PsycPRwf_1069	-	hypothetical protein
1060	 41.19	-1	1290087..1291193	+	368	148652877	-	PsycPRwf_1070	-	IS605 family transposase OrfB
1061	 47.35	0	1291263..1292339	+	358	148652878	-	PsycPRwf_1071	-	iron-containing alcohol dehydrogenase
1062	 42.97	0	1292502..1293248	-	248	148652879	-	PsycPRwf_1072	-	hypothetical protein
1063	 47.45	0	1293782..1295686	+	634	148652880	-	PsycPRwf_1073	-	hypothetical protein
1064	 45.21	0	1295785..1297560	+	591	148652881	-	PsycPRwf_1074	-	hypothetical protein
1065	 44.78	0	1297742..1298737	+	331	148652882	-	PsycPRwf_1075	-	phosphoesterase, PA-phosphatase related
1066	 49.29	0	1298791..1300050	-	419	148652883	-	PsycPRwf_1076	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
1067	 43.68	0	1300280..1300714	-	144	148652884	-	PsycPRwf_1077	-	hypothetical protein
1068	 40.83	-1	1300724..1301830	+	368	148652885	-	PsycPRwf_1078	-	IS605 family transposase OrfB
1069	 45.31	0	1301804..1302421	-	205	148652886	-	PsycPRwf_1079	-	LysR family transcriptional regulator
1070	 45.46	0	1302634..1304406	+	590	148652887	-	PsycPRwf_1080	-	D-lactate dehydrogenase
1071	 47.76	0	1304575..1306245	+	556	148652888	-	PsycPRwf_1081	-	AMP-dependent synthetase and ligase
1072	 47.96	0	1306463..1307734	+	423	148652889	-	PsycPRwf_1082	-	enoyl-CoA hydratase/isomerase
1073	 46.24	0	1307949..1308986	+	345	148652890	-	PsycPRwf_1083	-	amino acid aldolase or racemase-like protein
1074	 46.49	0	1309145..1310482	+	445	148652891	-	PsycPRwf_1084	-	FAD linked oxidase domain-containing protein
1075	 48.32	0	1310612..1311892	+	426	148652892	-	PsycPRwf_1085	-	hypothetical protein
1076	 39.47	-1	1312478..1313422	+	314	148652893	-	PsycPRwf_1086	-	OmpA/MotB domain-containing protein
1077	 42.81	0	1313661..1328957	+	5098	148652894	-	PsycPRwf_1087	-	putative outer membrane adhesin like proteiin
1078	 46.44	0	1329169..1330908	-	579	148652895	-	PsycPRwf_1088	-	transposase IS66
1079	 47.25	0	1330951..1331295	-	114	148652896	-	PsycPRwf_1089	-	IS66 Orf2 family protein
1080	 44.12	0	1331292..1331699	-	135	148652897	-	PsycPRwf_1090	-	transposase IS3/IS911 family protein
1081	 35.18	-2	1331737..1332495	-	252	148652898	-	PsycPRwf_1091	-	integrase catalytic subunit
1082	 36.46	-2	1332564..1333106	-	180	148652899	-	PsycPRwf_1092	-	hypothetical protein
1083	 42.70	0	1333250..1333879	-	209	148652900	-	PsycPRwf_1093	-	glutathione S-transferase domain-containing protein
1084	 47.49	0	1333906..1334583	-	225	148652901	-	PsycPRwf_1094	-	ThiJ/PfpI domain-containing protein
1085	 47.61	0	1334642..1335706	-	354	148652902	-	PsycPRwf_1095	-	alcohol dehydrogenase
1086	 44.75	0	1335942..1337150	-	402	148652903	-	PsycPRwf_1096	-	iron-containing alcohol dehydrogenase
1087	 46.02	0	1337652..1338242	-	196	148652904	-	PsycPRwf_1097	-	TetR family transcriptional regulator
1088	 47.42	0	1338861..1343738	+	1625	148652905	-	PsycPRwf_1098	-	NAD-glutamate dehydrogenase
1089	 46.82	0	1343891..1347931	-	1346	148652906	-	PsycPRwf_1099	-	SMC domain-containing protein
1090	 50.31	+1	1348049..1349662	-	537	148652907	-	PsycPRwf_1100	-	nuclease SbcCD, D subunit
1091	 50.29	+1	1349876..1351078	+	400	148652908	-	PsycPRwf_1101	-	methyltransferase small
1092	 47.06	0	1351315..1352079	+	254	148652909	-	PsycPRwf_1102	-	ABC transporter related
1093	 50.20	+1	1352222..1353199	+	325	148652910	-	PsycPRwf_1103	-	periplasmic binding protein
1094	 52.09	+1	1353210..1355294	+	694	148652911	-	PsycPRwf_1104	-	iron-hydroxamate transporter permease subunit
1095	 47.88	0	1355315..1356799	+	494	148652912	-	PsycPRwf_1105	-	major facilitator transporter
1096	 46.47	0	1357161..1359428	+	755	148652913	-	PsycPRwf_1106	-	TonB-dependent receptor, plug
1097	 51.37	+1	1359615..1361078	-	487	148652914	-	PsycPRwf_1107	-	uroporphyrin-III C-methyltransferase
1098	 45.08	0	1361295..1361924	-	209	148652915	-	PsycPRwf_1108	-	phosphoadenosine phosphosulfate reductase
1099	 50.75	+1	1362025..1362627	-	200	148652916	-	PsycPRwf_1109	-	hypothetical protein
1100	 47.89	0	1362620..1364302	-	560	148652917	-	PsycPRwf_1110	-	nitrite and sulphite reductase 4Fe-4S region
1101	 49.29	0	1364602..1365861	+	419	148652918	-	PsycPRwf_1111	-	sulfate adenylyltransferase
1102	 45.33	0	1366402..1366776	+	124	148652919	-	PsycPRwf_1112	-	hypothetical protein
1103	 51.64	+1	1367055..1368491	+	478	148652920	-	PsycPRwf_1113	-	phospholipase D/transphosphatidylase
1104	 47.32	0	1368634..1369398	-	254	148652921	-	PsycPRwf_1114	-	hypothetical protein
1105	 46.18	0	1369395..1372718	-	1107	148652922	-	PsycPRwf_1115	-	HsdR family type I site-specific deoxyribonuclease
1106	 38.31	-2	1372931..1373452	-	173	148652923	-	PsycPRwf_1116	-	hypothetical protein
1107	 41.38	-1	1373670..1373930	+	86	148652924	-	PsycPRwf_1117	-	transposase IS3/IS911 family protein
1108	 42.13	-1	1374017..1374391	+	124	148652925	-	PsycPRwf_1118	-	hypothetical protein
1109	 41.41	-1	1374444..1374740	+	98	148652926	-	PsycPRwf_1119	-	transposase IS3/IS911 family protein
1110	 43.86	0	1374755..1375609	+	284	148652927	-	PsycPRwf_1120	-	integrase catalytic subunit
1111	 36.81	-2	1375724..1376701	-	325	148652928	-	PsycPRwf_1121	-	hypothetical protein
1112	 42.45	-1	1377399..1377815	-	138	148652929	-	PsycPRwf_1123	-	hypothetical protein
1113	 38.87	-2	1377817..1379784	-	655	148652930	-	PsycPRwf_1124	-	hypothetical protein
1114	 37.39	-2	1379784..1381385	-	533	148652931	-	PsycPRwf_1125	-	phage integrase family protein
1115	 39.04	-2	1381372..1382562	-	396	148652932	-	PsycPRwf_1126	-	phage integrase family protein
1116	 49.06	0	1382751..1383659	-	302	148652933	-	PsycPRwf_1127	-	N-6 DNA methylase
1117	 38.61	-2	1383709..1384182	-	157	148652934	-	PsycPRwf_1128	-	hypothetical protein
1118	 47.85	0	1384631..1385002	+	123	148652935	-	PsycPRwf_1129	-	hypothetical protein
1119	 53.79	+2	1385158..1385685	-	175	148652936	-	PsycPRwf_1130	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.