IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.93   STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
54	 48.62	0	67680..69164	+	494	148651871	-	PsycPRwf_0054	-	permease YjgP/YjgQ family protein
55	 48.74	0	69161..70510	+	449	148651872	-	PsycPRwf_0055	-	permease YjgP/YjgQ family protein
56	 46.96	0	70721..71329	-	202	148651873	-	PsycPRwf_0056	-	methyltransferase small
57	 48.50	0	71419..72117	-	232	148651874	-	PsycPRwf_0057	-	phosphoglycolate phosphatase
58	 48.70	0	72142..72642	-	166	148651875	-	PsycPRwf_0058	-	hypothetical protein
59	 43.47	0	72940..73383	-	147	148651876	-	PsycPRwf_0059	-	hypothetical protein
60	 46.25	0	73612..74238	+	208	148651877	hisB	PsycPRwf_0060	-	imidazoleglycerol-phosphate dehydratase
61	 48.27	0	74243..74878	+	211	148651878	hisH	PsycPRwf_0061	-	imidazole glycerol phosphate synthase subunit HisH
62	 43.97	0	75246..75593	+	115	148651879	-	PsycPRwf_0062	-	hypothetical protein
63	 44.14	0	75685..76128	+	147	148651880	-	PsycPRwf_0063	-	transmembrane pair domain-containing protein
64	 49.19	0	76195..78975	-	926	148651881	acnA	PsycPRwf_0064	-	aconitate hydratase
65	 42.50	-1	79483..79842	-	119	148651882	-	PsycPRwf_0065	-	hypothetical protein
66	 46.04	0	79932..81788	-	618	148651883	-	PsycPRwf_0066	-	amidohydrolase 3
67	 45.28	0	82072..83142	-	356	148651884	-	PsycPRwf_0067	-	hypothetical protein
68	 51.57	+1	83647..84540	-	297	148651885	-	PsycPRwf_0068	-	alpha/beta hydrolase fold
69	 46.73	0	84811..86415	+	534	148651886	-	PsycPRwf_0069	-	cholesterol oxidase
70	 47.29	0	86426..87457	+	343	148651887	-	PsycPRwf_0070	-	lipoyltransferase and lipoate-protein ligase
71	 40.89	-1	87576..87959	+	127	148651888	-	PsycPRwf_0071	-	hypothetical protein
72	 42.47	-1	88199..88789	-	196	148651889	-	PsycPRwf_0072	-	cytochrome B561
73	 49.57	+1	89243..91897	-	884	148651890	-	PsycPRwf_0073	-	hypothetical protein
74	 44.62	0	92102..92863	-	253	148651891	-	PsycPRwf_0074	-	C factor cell-cell signaling protein
75	 45.49	0	93199..93774	+	191	148651892	-	PsycPRwf_0075	-	stress protein
76	 44.81	0	93929..95017	+	362	148651893	-	PsycPRwf_0076	-	hypothetical protein
77	 47.57	0	95318..95893	+	191	148651894	-	PsycPRwf_0077	-	stress protein
78	 47.01	0	95983..96735	+	250	148651895	-	PsycPRwf_0078	-	hypothetical protein
79	 48.38	0	96792..97409	+	205	148651896	-	PsycPRwf_0079	-	stress protein
80	 49.80	+1	97552..98790	-	412	148651897	-	PsycPRwf_0080	-	stress protein
81	 48.53	0	99115..100233	+	372	148651898	-	PsycPRwf_0081	-	hypothetical protein
82	 51.29	+1	100375..101655	+	426	148651899	-	PsycPRwf_0082	-	hypothetical protein
83	 47.60	0	101658..102512	+	284	148651900	-	PsycPRwf_0083	-	hypothetical protein
84	 49.00	0	102631..103830	+	399	148651901	-	PsycPRwf_0084	-	hypothetical protein
85	 50.19	+1	103978..105015	+	345	148651902	-	PsycPRwf_0085	-	citrate lyase beta subunit-like protein
86	 51.00	+1	105041..105742	-	233	148651903	-	PsycPRwf_0086	-	ABC transporter related
87	 51.69	+1	105835..106635	-	266	148651904	-	PsycPRwf_0087	-	GDSL family lipase
88	 48.22	0	106771..107388	-	205	148651905	-	PsycPRwf_0088	-	GCN5-related N-acetyltransferase
89	 46.28	0	107494..108798	-	434	148651906	avtA	PsycPRwf_0089	-	valine--pyruvate transaminase
90	 51.32	+1	108859..110148	-	429	148651907	-	PsycPRwf_0090	-	major facilitator transporter
91	 44.98	0	110349..110597	-	82	148651908	-	PsycPRwf_0091	-	hypothetical protein
92	 49.83	+1	110832..112007	-	391	148651909	-	PsycPRwf_0092	-	ApbE family lipoprotein
93	 49.19	0	112127..112927	-	266	148651910	-	PsycPRwf_0093	-	short-chain dehydrogenase/reductase SDR
94	 41.67	-1	113061..114344	+	427	148651911	-	PsycPRwf_0094	-	transposase, IS4 family protein
95	 46.41	0	114491..115729	-	412	148651912	-	PsycPRwf_0095	-	Na(+)-translocating NADH-quinone reductase subunit F
96	 44.17	0	115794..116402	-	202	148651913	-	PsycPRwf_0096	-	Na(+)-translocating NADH-quinone reductase subunit E
97	 42.81	0	116402..117076	-	224	148651914	-	PsycPRwf_0097	-	Na(+)-translocating NADH-quinone reductase subunit D
98	 46.41	0	117078..117941	-	287	148651915	-	PsycPRwf_0098	-	Na(+)-translocating NADH-quinone reductase subunit C
99	 48.01	0	117925..119157	-	410	148651916	-	PsycPRwf_0099	-	Na(+)-translocating NADH-quinone reductase subunit B
100	 48.35	0	119163..120527	-	454	148651917	-	PsycPRwf_0100	-	Na(+)-translocating NADH-quinone reductase subunit A
101	 51.54	+1	120917..121696	+	259	148651918	-	PsycPRwf_0101	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
102	 48.64	0	121869..123482	+	537	148651919	-	PsycPRwf_0102	-	MscS mechanosensitive ion channel
103	 45.83	0	123597..123812	-	71	148651920	-	PsycPRwf_0103	-	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase-like protein
104	 45.09	0	123847..125037	+	396	148651921	-	PsycPRwf_0104	-	hypothetical protein
105	 47.58	0	125180..126169	+	329	148651922	-	PsycPRwf_0105	-	alcohol dehydrogenase
106	 45.85	0	126261..126899	-	212	148651923	-	PsycPRwf_0106	-	2OG-Fe(II) oxygenase
107	 49.26	0	126926..127873	-	315	148651924	-	PsycPRwf_0107	-	alpha/beta hydrolase fold
108	 49.56	+1	128077..129987	-	636	148651925	-	PsycPRwf_0108	-	ABC transporter related
109	 47.80	0	130474..131358	+	294	148651926	-	PsycPRwf_0109	-	hypothetical protein
110	 48.24	0	131560..132525	-	321	148651927	-	PsycPRwf_0110	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
111	 36.00	-2	132728..132952	+	74	148651928	-	PsycPRwf_0111	-	hypothetical protein
112	 50.05	+1	133133..136015	+	960	148651929	-	PsycPRwf_0112	-	ATP-dependent helicase HepA
113	 51.71	+1	136158..136625	+	155	148651930	-	PsycPRwf_0113	-	ybaK/ebsC protein
114	 49.60	+1	136691..137065	+	124	148651931	-	PsycPRwf_0114	-	5-carboxymethyl-2-hydroxymuconate isomerase-like protein
115	 49.28	0	137070..137558	-	162	148651932	-	PsycPRwf_0115	-	hypothetical protein
116	 44.15	0	137725..139545	-	606	148651933	-	PsycPRwf_0116	-	acyl-CoA dehydrogenase domain-containing protein
117	 41.10	-1	139848..140954	-	368	148651934	-	PsycPRwf_0117	-	IS605 family transposase OrfB
118	 47.37	0	141266..142369	+	367	148651935	-	PsycPRwf_0118	-	hypothetical protein
119	 49.27	0	142442..143326	-	294	148651936	-	PsycPRwf_0119	-	shikimate 5-dehydrogenase
120	 47.84	0	143813..144508	+	231	148651937	-	PsycPRwf_0120	-	hypothetical protein
121	 51.58	+1	144592..145572	+	326	148651938	-	PsycPRwf_0121	-	branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase-like protein
122	 38.81	-2	145518..145718	-	66	148651939	-	PsycPRwf_0122	-	hypothetical protein
123	 38.83	-2	145859..146422	+	187	148651940	-	PsycPRwf_0123	-	hypothetical protein
124	 41.44	-1	146473..147237	-	254	148651941	-	PsycPRwf_0124	-	Type II site-specific deoxyribonuclease
125	 49.24	0	147359..148540	+	393	148651942	-	PsycPRwf_0125	-	aminodeoxychorismate lyase
126	 50.24	+1	148636..149262	+	208	148651943	-	PsycPRwf_0126	-	dTMP kinase
127	 47.53	0	149406..151688	-	760	148651944	-	PsycPRwf_0127	-	sodium/hydrogen exchanger
128	 51.02	+1	152506..153930	+	474	148651945	-	PsycPRwf_0128	-	protease Do
129	 46.55	0	154567..155451	-	294	148651946	-	PsycPRwf_0129	-	pirin domain-containing protein
130	 44.77	0	155658..156164	+	168	148651947	-	PsycPRwf_0130	-	hypothetical protein
131	 48.48	0	156290..157807	-	505	148651948	gltX	PsycPRwf_0131	-	glutamyl-tRNA synthetase
132	 51.37	+1	158286..159305	+	339	148651949	-	PsycPRwf_0132	-	S-adenosyl-methyltransferase MraW
133	 48.15	0	159459..159917	+	152	148651950	-	PsycPRwf_0133	-	cell division protein FtsL
134	 48.61	0	160003..162012	+	669	148651951	-	PsycPRwf_0134	-	peptidoglycan glycosyltransferase
135	 50.35	+1	162117..163826	+	569	148651952	-	PsycPRwf_0135	-	UDP-N-acetylmuramyl-tripeptide synthetase
136	 50.33	+1	163891..165408	+	505	148651953	-	PsycPRwf_0136	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
137	 46.26	0	165724..166845	+	373	148651954	-	PsycPRwf_0137	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
138	 49.53	+1	167017..167979	+	320	148651955	-	PsycPRwf_0138	-	rRNA (guanine-N(1)-)-methyltransferase
139	 51.22	+1	168080..169018	-	312	148651956	-	PsycPRwf_0139	-	tyrosine recombinase XerD
140	 47.62	0	169059..169352	-	97	148651957	-	PsycPRwf_0140	-	SirA family protein
141	 42.46	-1	169445..170551	-	368	148651958	-	PsycPRwf_0141	-	IS605 family transposase OrfB
142	 47.31	0	170628..171128	-	166	148651959	-	PsycPRwf_0142	-	hypothetical protein
143	 51.31	+1	171218..171751	-	177	148651960	-	PsycPRwf_0143	-	Holliday junction resolvase YqgF
144	 50.44	+1	171889..172455	-	188	148651961	-	PsycPRwf_0144	-	hypothetical protein
145	 50.00	+1	172579..174390	-	603	148651962	-	PsycPRwf_0145	-	DNA repair protein RecN
146	 45.35	0	175039..175371	+	110	148651963	-	PsycPRwf_0146	-	hypothetical protein
147	 52.42	+1	175574..176359	+	261	148651964	-	PsycPRwf_0147	-	RNA methyltransferase
148	 49.38	+1	176463..177110	-	215	148651965	-	PsycPRwf_0148	-	dephospho-CoA kinase
149	 49.84	+1	177662..178582	-	306	148651966	-	PsycPRwf_0149	-	peptidase A24A domain-containing protein
150	 48.99	0	178666..179898	-	410	148651967	-	PsycPRwf_0150	-	type II secretion system protein
151	 49.64	+1	179959..181221	-	420	148651968	-	PsycPRwf_0151	-	type II secretion system protein E
152	 48.62	0	181557..182354	+	265	148651969	-	PsycPRwf_0152	-	Triose-phosphate isomerase
153	 49.69	+1	182520..182837	+	105	148651970	secG	PsycPRwf_0153	-	preprotein translocase subunit SecG
45.93	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.