IslandPath Analysis: Pseudomonas putida KT2440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.83   STD DEV: 4.04
Pseudomonas putida KT2440, complete genome - 1..6181863
5350 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
910	 61.21	0	1062198..1062728	+	176	26987655	-	PP_0919	-	hypothetical protein
911	 64.00	0	1062837..1063886	-	349	26987656	xenB	PP_0920	-	NADH:flavin oxidoreductase/NADH oxidase
912	 58.42	0	1063904..1064206	-	100	26987657	-	PP_0921	-	ArsR family transcriptional regulator
913	 63.25	0	1064357..1064941	+	194	26987658	-	PP_0922	-	hypothetical protein
914	 65.15	0	1065054..1065842	-	262	26987659	-	PP_0923	-	phospholipid/glycerol acyltransferase
915	 63.62	0	1065842..1066597	-	251	26987660	-	PP_0924	-	hypothetical protein
916	 68.24	+1	1066758..1067645	+	295	26987661	-	PP_0925	-	hypothetical protein
917	 62.24	0	1067833..1068780	+	315	26987662	-	PP_0926	-	auxin efflux carrier
918	 61.60	0	1068837..1070198	+	453	26987663	aroP	PP_0927	-	amino acid ABC transporter permease
919	 64.37	0	1070340..1071383	-	347	26987664	-	PP_0928	-	Na+/Ca+ antiporter, CaCA family
920	 65.07	0	1071444..1071818	-	124	26987665	-	PP_0929	-	rare lipoprotein A
921	 61.07	0	1071945..1073390	-	481	26987666	gatB	PP_0930	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
922	 65.43	0	1073402..1074853	-	483	26987667	gatA	PP_0931	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
923	 62.50	0	1074869..1075156	-	95	161378141	gatC	PP_0932	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
924	 61.13	0	1075281..1076399	+	372	26987669	mreB	PP_0933	-	cell shape determining protein, MreB/Mrl family
925	 65.87	0	1076620..1077618	+	332	26987670	mreC	PP_0934	-	rod shape-determining protein MreC
926	 61.18	0	1077615..1078106	+	163	26987671	mreD	PP_0935	-	rod shape-determining protein MreD
927	 63.89	0	1078139..1078750	+	203	26987672	maf	PP_0936	-	Maf-like protein
928	 60.49	0	1078804..1080261	+	485	26987673	cafA	PP_0937	-	ribonuclease, Rne/Rng family
929	 64.70	0	1080344..1084165	+	1273	26987674	-	PP_0938	-	hypothetical protein
930	 65.14	0	1084174..1085025	+	283	26987675	-	PP_0939	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
931	 64.38	0	1085028..1086467	+	479	26987676	tldD	PP_0940	-	tldD protein
932	 61.88	0	1086525..1087046	-	173	26987677	-	PP_0941	-	hypothetical protein
933	 62.84	0	1087144..1088502	+	452	26987678	pmbA	PP_0942	-	pmbA protein
934	 61.83	0	1088756..1089148	+	130	26987679	fagA	PP_0943	-	hypothetical protein
935	 61.81	0	1089138..1090517	+	459	26987680	fumC	PP_0944	-	fumarate hydratase
936	 62.99	0	1090545..1091006	+	153	26987681	-	PP_0945	-	hypothetical protein
937	 59.56	0	1090987..1091619	+	210	26987682	sodA	PP_0946	-	superoxide dismutase
938	 64.14	0	1091616..1092524	+	302	26987683	-	PP_0947	-	zinc/iron permease
939	 63.37	0	1092552..1092824	-	90	26987684	ptsO	PP_0948	-	phosphotransferase system, phosphocarrier protein HPr
940	 60.94	0	1092843..1093697	-	284	26987685	-	PP_0949	-	hypothetical protein
941	 61.29	0	1093700..1094164	-	154	26987686	ptsN	PP_0950	-	PTS IIA-like nitrogen-regulatory protein PtsN
942	 54.69	-1	1094177..1094485	-	102	26987687	rpoX	PP_0951	-	sigma 54 modulation protein/ribosomal protein S30EA
943	 59.84	0	1094565..1096058	-	497	26987688	rpoN	PP_0952	-	RNA polymerase factor sigma-54
944	 60.88	0	1096234..1096959	-	241	26987689	-	PP_0953	-	ABC transporter ATP-binding protein
945	 59.81	0	1096960..1097484	-	174	26987690	-	PP_0954	-	hypothetical protein
946	 57.59	-1	1097471..1098043	-	190	26987691	-	PP_0955	-	hypothetical protein
947	 63.81	0	1098052..1098576	-	174	26987692	-	PP_0956	-	YrbI family phosphatase
948	 64.00	0	1098589..1099563	-	324	26987693	-	PP_0957	-	KpsF/GutQ family protein
949	 63.33	0	1099812..1100621	+	269	26987694	ttg2A	PP_0958	-	toluene tolerance ABC efflux transporter, ATP-binding protein
950	 61.30	0	1100618..1101418	+	266	26987695	ttg2B	PP_0959	-	hypothetical protein
951	 57.20	-1	1101418..1101903	+	161	26987696	ttg2C	PP_0960	-	hypothetical protein
952	 59.57	0	1101913..1102560	+	215	26987697	ttg2D	PP_0961	-	toluene tolerance family protein
953	 61.72	0	1102557..1102859	+	100	26987698	ttg2E	PP_0962	-	toluene-tolerance protein
954	 55.00	-1	1102977..1103216	+	79	26987699	ttg2F	PP_0963	-	BolA family protein
955	 62.16	0	1103240..1104505	+	421	26987700	murA	PP_0964	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
956	 61.95	0	1104597..1105232	+	211	26987701	hisG	PP_0965	-	ATP phosphoribosyltransferase catalytic subunit
957	 63.88	0	1105519..1106844	+	441	26987702	hisD	PP_0966	-	histidinol dehydrogenase
958	 62.37	0	1106847..1107893	+	348	26987703	hisC	PP_0967	-	histidinol-phosphate aminotransferase
959	 59.26	0	1108009..1109250	-	413	26987704	-	PP_0968	-	hypothetical protein
960	 64.36	0	1109333..1109983	+	216	26987705	-	PP_0969	-	GntR family transcriptional regulator
961	 64.37	0	1109973..1111277	+	434	26987706	-	PP_0970	-	cyanate transporter
962	 61.01	0	1111387..1111863	+	158	26987707	-	PP_0971	-	hypothetical protein
963	 63.21	0	1111880..1112197	+	105	26987708	-	PP_0972	-	GIY-YIG nuclease superfamily protein
964	 60.52	0	1112145..1113152	-	335	26987709	ndpA	PP_0973	-	nucleoid-associated protein NdpA
965	 49.70	-2	1113202..1113531	+	109	26987710	-	PP_0974	-	hypothetical protein
966	 57.09	-1	1113522..1113803	+	93	26987711	hupN	PP_0975	-	histone family protein DNA-binding protein
967	 63.63	0	1113851..1114804	-	317	26987712	-	PP_0976	-	putative SAM-dependent methyltransferase
968	 62.03	0	1114983..1117829	-	948	26987713	valS	PP_0977	-	valyl-tRNA synthetase
969	 64.21	0	1117913..1118278	-	121	26987714	-	PP_0978	-	hypothetical protein
970	 62.24	0	1118284..1118712	-	142	26987715	holC	PP_0979	-	DNA polymerase III subunit chi
971	 64.52	0	1118763..1120256	-	497	26987716	pepA	PP_0980	-	leucyl aminopeptidase
972	 60.94	0	1120241..1120432	-	63	26987717	-	PP_0981	-	hypothetical protein
973	 64.70	0	1120558..1121673	+	371	26987718	-	PP_0982	-	permease YjgP/YjgQ family protein
974	 62.05	0	1121666..1122727	+	353	26987719	-	PP_0983	-	permease YjgP/YjgQ family protein
975	 60.33	0	1122874..1123362	-	162	26987720	-	PP_0984	-	RDD domain containing protein
976	 51.20	-2	1123452..1123949	-	165	26987721	-	PP_0985	-	cold-shock domain-contain protein
977	 63.10	0	1124019..1125140	-	373	26987722	gcvT-1	PP_0986	-	glycine cleavage system T protein
978	 65.29	0	1125168..1126544	-	458	26987723	sda-2	PP_0987	-	L-serine dehydratase 1
979	 65.34	0	1126693..1129548	-	951	26987724	gcvP-1	PP_0988	-	glycine dehydrogenase
980	 60.16	0	1129560..1129943	-	127	26987725	gcvH	PP_0989	-	glycine cleavage system protein H
981	 61.76	0	1130247..1130633	-	128	26987726	-	PP_0990	-	DoxX family protein
982	 63.31	0	1130707..1131480	-	257	26987727	-	PP_0991	-	hypothetical protein
983	 59.59	0	1131477..1132310	-	277	26987728	-	PP_0992	-	hypothetical protein
984	 63.54	0	1132327..1132614	-	95	26987729	-	PP_0993	-	hypothetical protein
985	 58.29	0	1132838..1133422	+	194	161378140	-	PP_0994	-	RNA polymerase sigma factor
986	 65.73	0	1133412..1134053	+	213	26987731	-	PP_0995	-	hypothetical protein
987	 56.14	-1	1134131..1135336	-	401	26987732	gltS	PP_0996	-	sodium/glutamate symporter
988	 65.08	0	1135464..1136972	-	502	26987733	-	PP_0997	-	sigma-54 dependent transcriptional regulator/sensory box protein
989	 55.94	-1	1137113..1137541	-	142	26987734	-	PP_0998	-	hypothetical protein
990	 62.26	0	1137538..1138467	-	309	26987735	arcC	PP_0999	-	carbamate kinase
991	 59.74	0	1138632..1139642	-	336	26987736	argI	PP_1000	-	ornithine carbamoyltransferase
992	 61.96	0	1139712..1140965	-	417	26987737	arcA	PP_1001	-	arginine deiminase
993	 61.27	0	1140999..1142426	-	475	26987738	arcD	PP_1002	-	arginine/ornithine antiporter
994	 62.89	0	1142863..1144290	+	475	26987739	-	PP_1003	-	arginine/ornithine antiporter
995	 64.25	0	1144270..1144683	-	137	26987740	-	PP_1004	-	hypothetical protein
996	 66.84	+1	1144738..1145331	-	197	26987741	hemO	PP_1005	-	heme oxygenase
997	 60.83	0	1145472..1147751	-	759	26987742	-	PP_1006	-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
998	 66.10	+1	1148187..1149242	-	351	26987743	-	PP_1007	-	anti-FecI sigma factor, FecR
999	 62.18	0	1149239..1149751	-	170	26987744	-	PP_1008	-	ECF subfamily RNA polymerase sigma factor
1000	 63.87	0	1150008..1151009	-	333	26987745	gap-1	PP_1009	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1001	 66.17	+1	1151274..1153100	+	608	26987746	edd	PP_1010	-	phosphogluconate dehydratase
1002	 64.06	0	1153097..1154056	+	319	26987747	glk	PP_1011	-	glucokinase
1003	 64.46	0	1154135..1154860	+	241	26987748	gltR-2	PP_1012	-	winged helix family two component transcriptional regulator
1004	 64.95	0	1154841..1156295	+	484	26987749	-	PP_1013	-	integral membrane sensor signal transduction histidine kinase
1005	 64.91	0	1156511..1157761	+	416	26987750	-	PP_1014	-	hypothetical protein
1006	 61.15	0	1157866..1159152	+	428	26987751	-	PP_1015	-	sugar ABC transporter, periplasmic sugar-binding protein
1007	 64.03	0	1159286..1160194	+	302	26987752	-	PP_1016	-	binding-protein-dependent transport systems inner membrane component
1008	 61.23	0	1160187..1161032	+	281	26987753	-	PP_1017	-	binding-protein-dependent transport systems inner membrane component
1009	 63.98	0	1161036..1162190	+	384	26987754	-	PP_1018	-	sugar ABC transporter, ATP-binding subunit
61.83	MEAN

4.04	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.