version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 838 61.11 0 982988..983329 + 113 26987583 - PP_0847 - ferredoxin, 2Fe-2S type, ISC system 839 55.22 -1 983340..983540 + 66 26987584 - PP_0848 - hypothetical protein 840 56.34 -1 983629..984054 + 141 26987585 ndk PP_0849 - nucleoside-diphosphate kinase 841 59.42 0 984083..985228 + 381 26987586 - PP_0850 - radical SAM enzyme, Cfr family 842 60.81 0 985237..986004 + 255 26987587 pilF PP_0851 - type IV pilus biogenesis/stability protein PilW 843 65.28 0 986001..987008 + 335 26987588 - PP_0852 - Cro/CI family transcriptional regulator 844 62.52 0 987012..988121 + 369 26987589 ispG PP_0853 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 845 63.10 0 988147..989436 + 429 26987590 hisS PP_0854 - histidyl-tRNA synthetase 846 63.08 0 989476..990117 + 213 26987591 - PP_0855 - hypothetical protein 847 63.25 0 990118..991260 + 380 26987592 - PP_0856 - hypothetical protein 848 60.86 0 991377..992840 + 487 26987593 engA PP_0857 - GTP-binding protein EngA 849 62.05 0 992992..994140 + 382 26987594 - PP_0858 - putative aminotransferase 850 63.51 0 994128..994919 + 263 26987595 - PP_0859 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 851 64.55 0 995044..997593 - 849 26987596 - PP_0860 - flavodoxin/nitric oxide synthase 852 62.65 0 997825..1000167 - 780 26987597 - PP_0861 - TonB-dependent siderophore receptor 853 62.70 0 1000338..1001018 + 226 26987598 - PP_0862 - putative hydroxylase 854 65.89 +1 1001022..1001792 + 256 26987599 - PP_0863 - Sel1 domain protein repeat-containing protein 855 59.68 0 1001821..1002936 - 371 26987600 - PP_0864 - ornithine decarboxylase 856 63.79 0 1003492..1003977 + 161 26987601 - PP_0865 - RNA polymerase, sigma-24 subunit, ECF subfamily 857 65.25 0 1003974..1004960 + 328 26987602 - PP_0866 - anti-FecI sigma factor, FecR 858 62.47 0 1005069..1007498 + 809 26987603 - PP_0867 - FecA-like outer membrane receptor 859 60.97 0 1007588..1008745 - 385 26987604 - PP_0868 - glycine betaine/L-proline ABC transporter, ATPase subunit 860 65.29 0 1008742..1009395 - 217 26987605 - PP_0869 - binding-protein-dependent transport systems inner membrane component 861 62.85 0 1009392..1010333 - 313 26987606 - PP_0870 - substrate-binding region of ABC-type glycine betaine transport system 862 64.92 0 1010317..1011060 - 247 26987607 - PP_0871 - binding-protein-dependent transport systems inner membrane component 863 61.49 0 1011587..1013170 + 527 26987608 prfC PP_0872 - peptide chain release factor 3 864 59.54 0 1013301..1014380 - 359 26987609 - PP_0873 - periplasmic polyamine-binding protein, putative 865 61.11 0 1014433..1014774 - 113 26987610 - PP_0874 - hypothetical protein 866 65.83 0 1014808..1016238 - 476 26987611 - PP_0875 - FAD dependent oxidoreductase 867 64.24 0 1016279..1017103 - 274 26987612 - PP_0876 - AraC family transcriptional regulator 868 45.83 -2 1017155..1017250 - 31 26987613 - PP_0877 - hypothetical protein 869 64.19 0 1018090..1019058 - 322 26987614 dppF PP_0878 - dipeptide transporter ATP-binding subunit 870 64.71 0 1019058..1020026 - 322 26987615 dppD PP_0879 - oligopeptide/dipeptide ABC transporter, ATPase subunit 871 65.80 0 1020037..1020963 - 308 26987616 dppC PP_0880 - binding-protein-dependent transport systems inner membrane component 872 63.20 0 1020974..1021984 - 336 26987617 dppB PP_0881 - alkaline phosphatase 873 60.61 0 1022076..1023710 - 544 26987618 dppA PP_0882 - dipeptide ABC transporter, periplasmic dipeptide-binding protein 874 62.46 0 1023765..1025144 - 459 26987619 - PP_0883 - outer membrane porin 875 61.71 0 1025373..1026965 - 530 26987620 - PP_0884 - dipeptide ABC transporter, periplasmic peptide-binding protein 876 59.78 0 1027112..1028737 - 541 26987621 - PP_0885 - dipeptide ABC transporter, periplasmic peptide-binding protein 877 61.65 0 1029118..1029834 - 238 26987622 - PP_0886 - hypothetical protein 878 63.27 0 1029941..1031293 + 450 26987623 - PP_0887 - integral membrane sensor signal transduction histidine kinase 879 63.64 0 1031293..1031853 + 186 26987624 - PP_0888 - two component transcriptional regulator, Fis family 880 66.93 +1 1031905..1033041 + 378 26987625 - PP_0889 - beta-lactamase 881 63.97 0 1033038..1033334 + 98 26987626 - PP_0890 - hypothetical protein 882 61.17 0 1033379..1033960 + 193 26987627 - PP_0891 - YceI family protein 883 65.37 0 1033962..1035119 + 385 26987628 - PP_0892 - phospholipase family protein 884 64.29 0 1035162..1035749 + 195 26987629 - PP_0893 - intracellular protease, PfpI family 885 60.40 0 1035780..1036178 - 132 26987630 - PP_0894 - hypothetical protein 886 65.14 0 1036294..1036884 + 196 26987631 - PP_0895 - hypothetical protein 887 65.52 0 1036881..1037753 + 290 26987632 - PP_0896 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 888 62.60 0 1037869..1039392 - 507 26987633 - PP_0897 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit 889 63.74 0 1039407..1039577 - 56 26987634 - PP_0898 - hypothetical protein 890 65.15 0 1039642..1040562 + 306 26987635 - PP_0899 - hypothetical protein 891 62.00 0 1040604..1041332 - 242 26987636 - PP_0900 - PAP2 family protein 892 63.60 0 1041516..1042199 + 227 26987637 colR PP_0901 - winged helix family two component transcriptional regulator 893 64.36 0 1042156..1043499 + 447 26987638 - PP_0902 - integral membrane sensor signal transduction histidine kinase 894 58.15 0 1043607..1044287 + 226 26987639 - PP_0903 - methyltransferase type 11 895 61.68 0 1044291..1044992 + 233 26987640 - PP_0904 - lipopolysaccharide kinase 896 61.11 0 1044992..1045225 + 77 26987641 - PP_0905 - hypothetical protein 897 61.44 0 1045331..1048375 - 1014 26987642 - PP_0906 - multidrug efflux protein 898 63.88 0 1048377..1049597 - 406 26987643 - PP_0907 - RND efflux membrane fusion protein-related protein 899 65.21 0 1049753..1050850 - 365 26987644 - PP_0908 - hypothetical protein 900 62.72 0 1050853..1051917 - 354 26987645 - PP_0909 - hypothetical protein 901 65.90 +1 1051937..1053364 - 475 26987646 - PP_0910 - hypothetical protein 902 56.85 -1 1053474..1053860 - 128 26987647 - PP_0911 - hypothetical protein 903 60.03 0 1053874..1054461 - 195 26987648 - PP_0912 - hypothetical protein 904 63.89 0 1054498..1055829 - 443 26987649 - PP_0913 - hypothetical protein 905 61.77 0 1055988..1058069 - 693 26987650 - PP_0914 - GGDEF domain-containing protein 906 60.13 0 1058289..1058885 - 198 26987651 sodB PP_0915 - superoxide dismutase 907 66.83 +1 1059152..1059766 - 204 26987652 - PP_0916 - amino acid transporter LysE 908 65.54 0 1059853..1060743 + 296 26987653 - PP_0917 - chromosome replication initiation inhibitor protein 909 62.34 0 1060793..1061785 + 330 26987654 - PP_0918 - NAD-dependent epimerase/dehydratase 910 61.21 0 1062198..1062728 + 176 26987655 - PP_0919 - hypothetical protein 911 64.00 0 1062837..1063886 - 349 26987656 xenB PP_0920 - NADH:flavin oxidoreductase/NADH oxidase 912 58.42 0 1063904..1064206 - 100 26987657 - PP_0921 - ArsR family transcriptional regulator 913 63.25 0 1064357..1064941 + 194 26987658 - PP_0922 - hypothetical protein 914 65.15 0 1065054..1065842 - 262 26987659 - PP_0923 - phospholipid/glycerol acyltransferase 915 63.62 0 1065842..1066597 - 251 26987660 - PP_0924 - hypothetical protein 916 68.24 +1 1066758..1067645 + 295 26987661 - PP_0925 - hypothetical protein 917 62.24 0 1067833..1068780 + 315 26987662 - PP_0926 - auxin efflux carrier 918 61.60 0 1068837..1070198 + 453 26987663 aroP PP_0927 - amino acid ABC transporter permease 919 64.37 0 1070340..1071383 - 347 26987664 - PP_0928 - Na+/Ca+ antiporter, CaCA family 920 65.07 0 1071444..1071818 - 124 26987665 - PP_0929 - rare lipoprotein A 921 61.07 0 1071945..1073390 - 481 26987666 gatB PP_0930 - aspartyl/glutamyl-tRNA amidotransferase subunit B 922 65.43 0 1073402..1074853 - 483 26987667 gatA PP_0931 - aspartyl/glutamyl-tRNA amidotransferase subunit A 923 62.50 0 1074869..1075156 - 95 161378141 gatC PP_0932 - aspartyl/glutamyl-tRNA amidotransferase subunit C 924 61.13 0 1075281..1076399 + 372 26987669 mreB PP_0933 - cell shape determining protein, MreB/Mrl family 925 65.87 0 1076620..1077618 + 332 26987670 mreC PP_0934 - rod shape-determining protein MreC 926 61.18 0 1077615..1078106 + 163 26987671 mreD PP_0935 - rod shape-determining protein MreD 927 63.89 0 1078139..1078750 + 203 26987672 maf PP_0936 - Maf-like protein 928 60.49 0 1078804..1080261 + 485 26987673 cafA PP_0937 - ribonuclease, Rne/Rng family 929 64.70 0 1080344..1084165 + 1273 26987674 - PP_0938 - hypothetical protein 930 65.14 0 1084174..1085025 + 283 26987675 - PP_0939 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 931 64.38 0 1085028..1086467 + 479 26987676 tldD PP_0940 - tldD protein 932 61.88 0 1086525..1087046 - 173 26987677 - PP_0941 - hypothetical protein 933 62.84 0 1087144..1088502 + 452 26987678 pmbA PP_0942 - pmbA protein 934 61.83 0 1088756..1089148 + 130 26987679 fagA PP_0943 - hypothetical protein 935 61.81 0 1089138..1090517 + 459 26987680 fumC PP_0944 - fumarate hydratase 936 62.99 0 1090545..1091006 + 153 26987681 - PP_0945 - hypothetical protein 937 59.56 0 1090987..1091619 + 210 26987682 sodA PP_0946 - superoxide dismutase 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.