IslandPath Analysis: Pseudomonas putida KT2440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.83   STD DEV: 4.04
Pseudomonas putida KT2440, complete genome - 1..6181863
5350 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
831	 63.36	0	977047..977832	+	261	26987576	cysE	PP_0840	-	serine O-acetyltransferase
832	 63.41	0	978012..978503	+	163	26987577	-	PP_0841	-	BadM/Rrf2 family transcriptional regulator
833	 60.08	0	978549..979763	+	404	26987578	iscS	PP_0842	-	cysteine desulfurase IscS
834	 59.17	0	979810..980196	+	128	26987579	iscU	PP_0843	-	scaffold protein
835	 58.95	0	980225..980548	+	107	26987580	iscA	PP_0844	-	iron-sulfur cluster assembly protein IscA
836	 62.45	0	980557..981078	+	173	26987581	hscB	PP_0845	-	co-chaperone HscB
837	 65.22	0	981122..982984	+	620	26987582	hscA	PP_0846	-	chaperone protein HscA
838	 61.11	0	982988..983329	+	113	26987583	-	PP_0847	-	ferredoxin, 2Fe-2S type, ISC system
839	 55.22	-1	983340..983540	+	66	26987584	-	PP_0848	-	hypothetical protein
840	 56.34	-1	983629..984054	+	141	26987585	ndk	PP_0849	-	nucleoside-diphosphate kinase
841	 59.42	0	984083..985228	+	381	26987586	-	PP_0850	-	radical SAM enzyme, Cfr family
842	 60.81	0	985237..986004	+	255	26987587	pilF	PP_0851	-	type IV pilus biogenesis/stability protein PilW
843	 65.28	0	986001..987008	+	335	26987588	-	PP_0852	-	Cro/CI family transcriptional regulator
844	 62.52	0	987012..988121	+	369	26987589	ispG	PP_0853	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
845	 63.10	0	988147..989436	+	429	26987590	hisS	PP_0854	-	histidyl-tRNA synthetase
846	 63.08	0	989476..990117	+	213	26987591	-	PP_0855	-	hypothetical protein
847	 63.25	0	990118..991260	+	380	26987592	-	PP_0856	-	hypothetical protein
848	 60.86	0	991377..992840	+	487	26987593	engA	PP_0857	-	GTP-binding protein EngA
849	 62.05	0	992992..994140	+	382	26987594	-	PP_0858	-	putative aminotransferase
850	 63.51	0	994128..994919	+	263	26987595	-	PP_0859	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
851	 64.55	0	995044..997593	-	849	26987596	-	PP_0860	-	flavodoxin/nitric oxide synthase
852	 62.65	0	997825..1000167	-	780	26987597	-	PP_0861	-	TonB-dependent siderophore receptor
853	 62.70	0	1000338..1001018	+	226	26987598	-	PP_0862	-	putative hydroxylase
854	 65.89	+1	1001022..1001792	+	256	26987599	-	PP_0863	-	Sel1 domain protein repeat-containing protein
855	 59.68	0	1001821..1002936	-	371	26987600	-	PP_0864	-	ornithine decarboxylase
856	 63.79	0	1003492..1003977	+	161	26987601	-	PP_0865	-	RNA polymerase, sigma-24 subunit, ECF subfamily
857	 65.25	0	1003974..1004960	+	328	26987602	-	PP_0866	-	anti-FecI sigma factor, FecR
858	 62.47	0	1005069..1007498	+	809	26987603	-	PP_0867	-	FecA-like outer membrane receptor
859	 60.97	0	1007588..1008745	-	385	26987604	-	PP_0868	-	glycine betaine/L-proline ABC transporter, ATPase subunit
860	 65.29	0	1008742..1009395	-	217	26987605	-	PP_0869	-	binding-protein-dependent transport systems inner membrane component
861	 62.85	0	1009392..1010333	-	313	26987606	-	PP_0870	-	substrate-binding region of ABC-type glycine betaine transport system
862	 64.92	0	1010317..1011060	-	247	26987607	-	PP_0871	-	binding-protein-dependent transport systems inner membrane component
863	 61.49	0	1011587..1013170	+	527	26987608	prfC	PP_0872	-	peptide chain release factor 3
864	 59.54	0	1013301..1014380	-	359	26987609	-	PP_0873	-	periplasmic polyamine-binding protein, putative
865	 61.11	0	1014433..1014774	-	113	26987610	-	PP_0874	-	hypothetical protein
866	 65.83	0	1014808..1016238	-	476	26987611	-	PP_0875	-	FAD dependent oxidoreductase
867	 64.24	0	1016279..1017103	-	274	26987612	-	PP_0876	-	AraC family transcriptional regulator
868	 45.83	-2	1017155..1017250	-	31	26987613	-	PP_0877	-	hypothetical protein
869	 64.19	0	1018090..1019058	-	322	26987614	dppF	PP_0878	-	dipeptide transporter ATP-binding subunit
870	 64.71	0	1019058..1020026	-	322	26987615	dppD	PP_0879	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
871	 65.80	0	1020037..1020963	-	308	26987616	dppC	PP_0880	-	binding-protein-dependent transport systems inner membrane component
872	 63.20	0	1020974..1021984	-	336	26987617	dppB	PP_0881	-	alkaline phosphatase
873	 60.61	0	1022076..1023710	-	544	26987618	dppA	PP_0882	-	dipeptide ABC transporter, periplasmic dipeptide-binding protein
874	 62.46	0	1023765..1025144	-	459	26987619	-	PP_0883	-	outer membrane porin
875	 61.71	0	1025373..1026965	-	530	26987620	-	PP_0884	-	dipeptide ABC transporter, periplasmic peptide-binding protein
876	 59.78	0	1027112..1028737	-	541	26987621	-	PP_0885	-	dipeptide ABC transporter, periplasmic peptide-binding protein
877	 61.65	0	1029118..1029834	-	238	26987622	-	PP_0886	-	hypothetical protein
878	 63.27	0	1029941..1031293	+	450	26987623	-	PP_0887	-	integral membrane sensor signal transduction histidine kinase
879	 63.64	0	1031293..1031853	+	186	26987624	-	PP_0888	-	two component transcriptional regulator, Fis family
880	 66.93	+1	1031905..1033041	+	378	26987625	-	PP_0889	-	beta-lactamase
881	 63.97	0	1033038..1033334	+	98	26987626	-	PP_0890	-	hypothetical protein
882	 61.17	0	1033379..1033960	+	193	26987627	-	PP_0891	-	YceI family protein
883	 65.37	0	1033962..1035119	+	385	26987628	-	PP_0892	-	phospholipase family protein
884	 64.29	0	1035162..1035749	+	195	26987629	-	PP_0893	-	intracellular protease, PfpI family
885	 60.40	0	1035780..1036178	-	132	26987630	-	PP_0894	-	hypothetical protein
886	 65.14	0	1036294..1036884	+	196	26987631	-	PP_0895	-	hypothetical protein
887	 65.52	0	1036881..1037753	+	290	26987632	-	PP_0896	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
888	 62.60	0	1037869..1039392	-	507	26987633	-	PP_0897	-	hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit
889	 63.74	0	1039407..1039577	-	56	26987634	-	PP_0898	-	hypothetical protein
890	 65.15	0	1039642..1040562	+	306	26987635	-	PP_0899	-	hypothetical protein
891	 62.00	0	1040604..1041332	-	242	26987636	-	PP_0900	-	PAP2 family protein
892	 63.60	0	1041516..1042199	+	227	26987637	colR	PP_0901	-	winged helix family two component transcriptional regulator
893	 64.36	0	1042156..1043499	+	447	26987638	-	PP_0902	-	integral membrane sensor signal transduction histidine kinase
894	 58.15	0	1043607..1044287	+	226	26987639	-	PP_0903	-	methyltransferase type 11
895	 61.68	0	1044291..1044992	+	233	26987640	-	PP_0904	-	lipopolysaccharide kinase
896	 61.11	0	1044992..1045225	+	77	26987641	-	PP_0905	-	hypothetical protein
897	 61.44	0	1045331..1048375	-	1014	26987642	-	PP_0906	-	multidrug efflux protein
898	 63.88	0	1048377..1049597	-	406	26987643	-	PP_0907	-	RND efflux membrane fusion protein-related protein
899	 65.21	0	1049753..1050850	-	365	26987644	-	PP_0908	-	hypothetical protein
900	 62.72	0	1050853..1051917	-	354	26987645	-	PP_0909	-	hypothetical protein
901	 65.90	+1	1051937..1053364	-	475	26987646	-	PP_0910	-	hypothetical protein
902	 56.85	-1	1053474..1053860	-	128	26987647	-	PP_0911	-	hypothetical protein
903	 60.03	0	1053874..1054461	-	195	26987648	-	PP_0912	-	hypothetical protein
904	 63.89	0	1054498..1055829	-	443	26987649	-	PP_0913	-	hypothetical protein
905	 61.77	0	1055988..1058069	-	693	26987650	-	PP_0914	-	GGDEF domain-containing protein
906	 60.13	0	1058289..1058885	-	198	26987651	sodB	PP_0915	-	superoxide dismutase
907	 66.83	+1	1059152..1059766	-	204	26987652	-	PP_0916	-	amino acid transporter LysE
908	 65.54	0	1059853..1060743	+	296	26987653	-	PP_0917	-	chromosome replication initiation inhibitor protein
909	 62.34	0	1060793..1061785	+	330	26987654	-	PP_0918	-	NAD-dependent epimerase/dehydratase
910	 61.21	0	1062198..1062728	+	176	26987655	-	PP_0919	-	hypothetical protein
911	 64.00	0	1062837..1063886	-	349	26987656	xenB	PP_0920	-	NADH:flavin oxidoreductase/NADH oxidase
912	 58.42	0	1063904..1064206	-	100	26987657	-	PP_0921	-	ArsR family transcriptional regulator
913	 63.25	0	1064357..1064941	+	194	26987658	-	PP_0922	-	hypothetical protein
914	 65.15	0	1065054..1065842	-	262	26987659	-	PP_0923	-	phospholipid/glycerol acyltransferase
915	 63.62	0	1065842..1066597	-	251	26987660	-	PP_0924	-	hypothetical protein
916	 68.24	+1	1066758..1067645	+	295	26987661	-	PP_0925	-	hypothetical protein
917	 62.24	0	1067833..1068780	+	315	26987662	-	PP_0926	-	auxin efflux carrier
918	 61.60	0	1068837..1070198	+	453	26987663	aroP	PP_0927	-	amino acid ABC transporter permease
919	 64.37	0	1070340..1071383	-	347	26987664	-	PP_0928	-	Na+/Ca+ antiporter, CaCA family
920	 65.07	0	1071444..1071818	-	124	26987665	-	PP_0929	-	rare lipoprotein A
921	 61.07	0	1071945..1073390	-	481	26987666	gatB	PP_0930	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
922	 65.43	0	1073402..1074853	-	483	26987667	gatA	PP_0931	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
923	 62.50	0	1074869..1075156	-	95	161378141	gatC	PP_0932	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
924	 61.13	0	1075281..1076399	+	372	26987669	mreB	PP_0933	-	cell shape determining protein, MreB/Mrl family
925	 65.87	0	1076620..1077618	+	332	26987670	mreC	PP_0934	-	rod shape-determining protein MreC
926	 61.18	0	1077615..1078106	+	163	26987671	mreD	PP_0935	-	rod shape-determining protein MreD
927	 63.89	0	1078139..1078750	+	203	26987672	maf	PP_0936	-	Maf-like protein
928	 60.49	0	1078804..1080261	+	485	26987673	cafA	PP_0937	-	ribonuclease, Rne/Rng family
929	 64.70	0	1080344..1084165	+	1273	26987674	-	PP_0938	-	hypothetical protein
930	 65.14	0	1084174..1085025	+	283	26987675	-	PP_0939	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
61.83	MEAN

4.04	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.