version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 448 57.29 -1 549324..550517 + 397 26987193 tuf PP_0452 - elongation factor Tu 449 53.53 -2 550659..550970 + 103 26987194 rpsJ PP_0453 - 30S ribosomal protein S10 450 57.39 -1 551051..551686 + 211 161378147 rplC PP_0454 - 50S ribosomal protein L3 451 57.05 -1 551699..552301 + 200 26987196 rplD PP_0455 - 50S ribosomal protein L4 452 50.00 -2 552298..552597 + 99 26987197 rplW PP_0456 - 50S ribosomal protein L23 453 58.18 0 552612..553436 + 274 26987198 rplB PP_0457 - 50S ribosomal protein L2 454 54.71 -1 553453..553728 + 91 26987199 rpsS PP_0458 - 30S ribosomal protein S19 455 57.66 -1 553740..554072 + 110 26987200 rplV PP_0459 - 50S ribosomal protein L22 456 54.00 -1 554086..554772 + 228 161378146 rpsC PP_0460 - 30S ribosomal protein S3 457 57.00 -1 554785..555198 + 137 26987202 rplP PP_0461 - 50S ribosomal protein L16 458 53.12 -2 555198..555389 + 63 161378145 rpmC PP_0462 - 50S ribosomal protein L29 459 54.68 -1 555392..555658 + 88 26987204 rpsQ PP_0463 - 30S ribosomal protein S17 460 55.28 -1 555682..556050 + 122 26987205 rplN PP_0464 - 50S ribosomal protein L14 461 52.06 -2 556062..556376 + 104 26987206 rplX PP_0465 - 50S ribosomal protein L24 462 56.11 -1 556397..556936 + 179 26987207 rplE PP_0466 - 50S ribosomal protein L5 463 59.48 0 556950..557255 + 101 26987208 rpsN PP_0467 - 30S ribosomal protein S14 464 57.51 -1 557464..557856 + 130 26987209 rpsH PP_0468 - 30S ribosomal protein S8 465 56.55 -1 557869..558402 + 177 26987210 rplF PP_0469 - 50S ribosomal protein L6 466 58.69 0 558413..558763 + 116 26987211 rplR PP_0470 - 50S ribosomal protein L18 467 56.89 -1 558767..559267 + 166 26987212 rpsE PP_0471 - 30S ribosomal protein S5 468 53.67 -2 559270..559446 + 58 26987213 rpmD PP_0472 - 50S ribosomal protein L30 469 58.85 0 559450..559884 + 144 26987214 rplO PP_0473 - 50S ribosomal protein L15 470 55.93 -1 559885..561216 + 443 26987215 secY PP_0474 - preprotein translocase subunit SecY 471 55.56 -1 561245..561361 + 38 26987216 rpmJ PP_0475 - 50S ribosomal protein L36 472 55.46 -1 561493..561849 + 118 26987217 rpsM PP_0476 - 30S ribosomal protein S13 473 57.69 -1 561868..562257 + 129 26987218 rpsK PP_0477 - 30S ribosomal protein S11 474 55.72 -1 562273..562893 + 206 26987219 rpsD PP_0478 - 30S ribosomal protein S4 475 56.59 -1 562916..563917 + 333 26987220 rpoA PP_0479 - DNA-directed RNA polymerase subunit alpha 476 59.69 0 563960..564346 + 128 26987221 rplQ PP_0480 - 50S ribosomal protein L17 477 59.10 0 564519..565958 + 479 26987222 katA PP_0481 - catalase 478 57.85 0 566122..566586 + 154 26987223 - PP_0482 - bacterioferritin 479 61.59 0 566659..569493 - 944 26987224 uvrA PP_0483 - excinuclease ABC subunit A 480 61.94 0 569623..571017 + 464 26987225 - PP_0484 - major facilitator family transporter 481 63.00 0 571027..571572 + 181 26987226 ssb PP_0485 - single-strand DNA-binding protein 482 62.67 0 571663..573087 - 474 26987227 - PP_0486 - GntR family transcriptional regulator 483 59.40 0 573234..574031 + 265 26987228 - PP_0487 - hypothetical protein 484 61.55 0 574053..574814 + 253 26987229 - PP_0488 - short chain dehydrogenase/reductase family oxidoreductase 485 63.93 0 578030..578980 + 316 26987230 - PP_0490 - formate dehydrogenase, beta subunit 486 61.49 0 578977..579633 + 218 26987231 - PP_0491 - formate dehydrogenase, gamma subunit 487 64.79 0 579608..580564 + 318 26987232 - PP_0492 - formate dehydrogenase accessory protein FdhE 488 66.46 +1 580709..582136 + 475 26987233 selA PP_0493 - selenocysteine synthase 489 65.89 +1 582133..584055 + 640 26987234 selB PP_0494 - selenocysteine-specific translation elongation factor 490 63.94 0 584264..585253 - 329 26987235 ansB PP_0495 - asparaginase 491 62.65 0 585326..586768 - 480 26987236 - PP_0496 - amino acid carrier protein 492 59.88 0 586947..587756 + 269 26987237 - PP_0497 - Cro/CI family transcriptional regulator 493 57.31 -1 587768..588643 - 291 26987238 - PP_0498 - hypothetical protein 494 65.76 0 589875..590759 + 294 26987239 - PP_0500 - dTDP-4-dehydrorhamnose reductase 495 61.63 0 590752..591684 + 310 26987240 - PP_0501 - NAD-dependent epimerase/dehydratase 496 58.78 0 591715..592158 - 147 26987241 - PP_0502 - HxlR family transcriptional regulator 497 64.18 0 592261..593466 + 401 26987242 - PP_0503 - major facilitator family transporter 498 61.70 0 593454..594137 - 227 26987243 oprG PP_0504 - OmpW family protein 499 62.91 0 594247..594885 - 212 26987244 - PP_0505 - putative lipoprotein 500 62.32 0 594886..596151 - 421 26987245 - PP_0506 - hypothetical protein 501 67.79 +1 596151..596861 - 236 26987246 - PP_0507 - efflux ABC transporter ATP-binding protein 502 62.20 0 596862..597443 - 193 26987247 - PP_0508 - hypothetical protein 503 65.80 0 597574..597918 + 114 26987248 - PP_0509 - hypothetical protein 504 62.20 0 598070..598942 - 290 26987249 trx-1 PP_0510 - thioredoxin 505 66.15 +1 599634..600218 - 194 26987250 - PP_0512 - hypothetical protein 506 64.30 0 600187..600651 + 154 161378144 - PP_0513 - transcriptional regulator NrdR 507 68.25 +1 600648..601784 + 378 26987252 ribD PP_0514 - riboflavin biosynthesis protein RibD 508 61.86 0 601827..602492 + 221 26987253 ribE-1 PP_0515 - riboflavin synthase subunit alpha 509 64.50 0 602493..603602 + 369 26987254 ribBA-1 PP_0516 - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 510 61.64 0 603694..604170 + 158 26987255 ribH PP_0517 - riboflavin synthase subunit beta 511 60.28 0 604167..604667 + 166 26987256 nusB PP_0518 - transcription antitermination protein NusB 512 67.18 +1 604686..605654 + 322 26987257 thiL PP_0519 - thiamine monophosphate kinase 513 61.51 0 605651..606154 + 167 26987258 pgpA PP_0520 - phosphatidylglycerophosphatase A 514 60.48 0 606171..606914 + 247 26987259 - PP_0521 - hypothetical protein 515 65.05 0 607095..607712 + 205 26987260 ribA PP_0522 - GTP cyclohydrolase II 516 65.00 0 607709..608128 + 139 26987261 - PP_0523 - hypothetical protein 517 66.30 +1 608128..608940 + 270 26987262 - PP_0524 - periplasmic binding protein 518 60.80 0 608918..610843 - 641 26987263 - PP_0525 - B12 family TonB-dependent receptor 519 57.56 -1 611102..612067 + 321 26987264 - PP_0526 - ISPpu10, transposase 520 65.30 0 612284..614179 - 631 161378143 dxs PP_0527 - 1-deoxy-D-xylulose-5-phosphate synthase 521 65.09 0 614357..615244 - 295 26987266 ispA PP_0528 - polyprenyl synthetase 522 63.37 0 615241..615483 - 80 26987267 xseB PP_0529 - exodeoxyribonuclease VII small subunit 523 64.82 0 615649..616299 - 216 26987268 ribB PP_0530 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 524 55.07 -1 616548..617651 + 367 26987269 - PP_0531 - hypothetical protein 525 67.11 +1 617673..618566 - 297 26987270 - PP_0532 - putative esterase 526 66.06 +1 618667..619995 - 442 26987271 pfeS PP_0533 - sensor protein PfeS 527 64.94 0 619995..620687 - 230 26987272 - PP_0534 - winged helix family two component transcriptional regulator 528 61.11 0 620869..623046 + 725 26987273 - PP_0535 - TonB-dependent siderophore receptor 529 47.77 -2 623208..623678 - 156 26987274 - PP_0536 - hypothetical protein 530 61.65 0 624203..625039 - 278 26987275 - PP_0537 - transcriptional regulator, putative 531 59.85 0 625087..625614 - 175 26987276 ppa PP_0538 - inorganic pyrophosphatase 532 63.36 0 625707..626522 - 271 26987277 - PP_0539 - hypothetical protein 533 61.27 0 626543..627190 - 215 26987278 - PP_0540 - SNARE associated Golgi protein 534 55.34 -1 627408..627866 - 152 26987279 - PP_0541 - acetyltransferase 535 67.28 +1 627974..628792 - 272 26987280 - PP_0542 - ethanolamine ammonia-lyase small subunit 536 64.30 0 628801..630195 - 464 26987281 eutB PP_0543 - ethanolamine ammonia lyase large subunit 537 62.73 0 630242..631690 - 482 26987282 - PP_0544 - ethanolamine transproter 538 60.88 0 631918..633438 - 506 26987283 - PP_0545 - aldehyde dehydrogenase family protein 539 65.06 0 633531..635708 + 725 26987284 - PP_0546 - GAF modulated sigma54 specific transcriptional regulator, Fis family 540 64.81 0 635775..637124 + 449 26987285 mpl PP_0547 - UDP-N-acetylmuramate 541 63.33 0 637121..637750 + 209 26987286 ubiD PP_0548 - aromatic acid decarboxylase 542 64.58 0 637747..638034 + 95 26987287 - PP_0549 - hypothetical protein 543 63.57 0 638142..638786 - 214 26987288 - PP_0550 - hypothetical protein 544 65.06 0 638814..640742 - 642 26987289 - PP_0551 - MORN domain-containing protein 545 62.26 0 640761..641849 - 362 26987290 adh PP_0552 - 2,3-butanediol dehydrogenase 546 66.58 +1 641878..642984 - 368 26987291 acoC PP_0553 - branched-chain alpha-keto acid dehydrogenase subunit E2 547 64.61 0 642981..644003 - 340 26987292 acoB PP_0554 - acetoin dehydrogenase, beta subunit 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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