version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 411 60.29 0 503853..504620 + 255 26987156 rpe PP_0415 - ribulose-phosphate 3-epimerase 412 64.10 0 504617..505435 + 272 26987157 gph PP_0416 - phosphoglycolate phosphatase 413 61.54 0 505505..506986 + 493 26987158 trpE PP_0417 - anthranilate synthase component I 414 64.07 0 507119..509008 - 629 26987159 - PP_0418 - GDSL family lipase 415 59.60 0 509142..509240 + 32 26987160 - PP_0419 - hypothetical protein 416 58.59 0 509376..509969 + 197 26987161 trpG PP_0420 - anthranilate synthase component II 417 60.00 0 509979..511028 + 349 26987162 trpD PP_0421 - anthranilate phosphoribosyltransferase 418 62.11 0 511025..511858 + 277 26987163 trpC PP_0422 - indole-3-glycerol-phosphate synthase 419 65.67 0 512006..512710 + 234 26987164 - PP_0423 - hypothetical protein 420 59.53 0 512707..513351 - 214 26987165 crp PP_0424 - cAMP-regulatory protein 421 60.05 0 513542..513964 + 140 26987166 - PP_0425 - OsmC family protein 422 61.96 0 514041..515081 - 346 26987167 - PP_0426 - hypothetical protein 423 63.12 0 515092..515739 - 215 26987168 - PP_0427 - hypothetical protein 424 56.34 -1 515805..516143 - 112 26987169 - PP_0428 - histidine triad (HIT) protein 425 66.67 +1 516207..516989 - 260 26987170 - PP_0429 - short chain dehydrogenase/reductase family oxidoreductase 426 65.41 0 517057..518013 - 318 26987171 - PP_0430 - hypothetical protein 427 59.62 0 518042..518467 - 141 26987172 - PP_0431 - hypothetical protein 428 65.02 0 518610..519644 + 344 26987173 argC PP_0432 - N-acetyl-gamma-glutamyl-phosphate reductase 429 58.65 0 519744..520142 + 132 26987174 - PP_0433 - iron-sulfur cluster insertion protein ErpA 430 66.76 +1 520202..521293 - 363 26987175 anmK PP_0434 - anhydro-N-acetylmuramic acid kinase 431 61.48 0 521297..522724 - 475 26987176 - PP_0435 - M24/M37 family peptidase 432 59.33 0 522932..524131 + 399 26987177 tyrS PP_0436 - tyrosyl-tRNA synthetase 433 57.92 0 530085..531044 + 319 26987178 birA PP_0437 - biotin--protein ligase 434 59.87 0 531034..531783 + 249 26987179 - PP_0438 - pantothenate kinase 435 53.98 -1 531752..532216 + 154 26987180 - PP_0439 - hypothetical protein 436 56.53 -1 532734..533927 + 397 26987181 tuf PP_0440 - elongation factor Tu 437 55.83 -1 534102..534470 + 122 26987182 secE PP_0441 - preprotein translocase subunit SecE 438 54.49 -1 534480..535013 + 177 26987183 nusG PP_0442 - transcription antitermination protein NusG 439 58.33 0 535133..535564 + 143 26987184 rplK PP_0443 - 50S ribosomal protein L11 440 57.04 -1 535564..536259 + 231 26987185 rplA PP_0444 - 50S ribosomal protein L1 441 56.49 -1 536457..536957 + 166 26987186 rplJ PP_0445 - 50S ribosomal protein L10 442 52.19 -2 537035..537400 + 121 26987187 rplL PP_0446 - 50S ribosomal protein L7/L12 443 58.79 0 537621..541694 + 1357 26987188 rpoB PP_0447 - DNA-directed RNA polymerase subunit beta 444 58.69 0 541759..545958 + 1399 26987189 rpoC PP_0448 - DNA-directed RNA polymerase subunit beta' 445 57.26 -1 546170..546541 + 123 26987190 rpsL PP_0449 - 30S ribosomal protein S12 446 57.75 -1 546648..547118 + 156 26987191 rpsG PP_0450 - 30S ribosomal protein S7 447 56.38 -1 547149..549296 + 715 26987192 fusA PP_0451 - elongation factor G 448 57.29 -1 549324..550517 + 397 26987193 tuf PP_0452 - elongation factor Tu 449 53.53 -2 550659..550970 + 103 26987194 rpsJ PP_0453 - 30S ribosomal protein S10 450 57.39 -1 551051..551686 + 211 161378147 rplC PP_0454 - 50S ribosomal protein L3 451 57.05 -1 551699..552301 + 200 26987196 rplD PP_0455 - 50S ribosomal protein L4 452 50.00 -2 552298..552597 + 99 26987197 rplW PP_0456 - 50S ribosomal protein L23 453 58.18 0 552612..553436 + 274 26987198 rplB PP_0457 - 50S ribosomal protein L2 454 54.71 -1 553453..553728 + 91 26987199 rpsS PP_0458 - 30S ribosomal protein S19 455 57.66 -1 553740..554072 + 110 26987200 rplV PP_0459 - 50S ribosomal protein L22 456 54.00 -1 554086..554772 + 228 161378146 rpsC PP_0460 - 30S ribosomal protein S3 457 57.00 -1 554785..555198 + 137 26987202 rplP PP_0461 - 50S ribosomal protein L16 458 53.12 -2 555198..555389 + 63 161378145 rpmC PP_0462 - 50S ribosomal protein L29 459 54.68 -1 555392..555658 + 88 26987204 rpsQ PP_0463 - 30S ribosomal protein S17 460 55.28 -1 555682..556050 + 122 26987205 rplN PP_0464 - 50S ribosomal protein L14 461 52.06 -2 556062..556376 + 104 26987206 rplX PP_0465 - 50S ribosomal protein L24 462 56.11 -1 556397..556936 + 179 26987207 rplE PP_0466 - 50S ribosomal protein L5 463 59.48 0 556950..557255 + 101 26987208 rpsN PP_0467 - 30S ribosomal protein S14 464 57.51 -1 557464..557856 + 130 26987209 rpsH PP_0468 - 30S ribosomal protein S8 465 56.55 -1 557869..558402 + 177 26987210 rplF PP_0469 - 50S ribosomal protein L6 466 58.69 0 558413..558763 + 116 26987211 rplR PP_0470 - 50S ribosomal protein L18 467 56.89 -1 558767..559267 + 166 26987212 rpsE PP_0471 - 30S ribosomal protein S5 468 53.67 -2 559270..559446 + 58 26987213 rpmD PP_0472 - 50S ribosomal protein L30 469 58.85 0 559450..559884 + 144 26987214 rplO PP_0473 - 50S ribosomal protein L15 470 55.93 -1 559885..561216 + 443 26987215 secY PP_0474 - preprotein translocase subunit SecY 471 55.56 -1 561245..561361 + 38 26987216 rpmJ PP_0475 - 50S ribosomal protein L36 472 55.46 -1 561493..561849 + 118 26987217 rpsM PP_0476 - 30S ribosomal protein S13 473 57.69 -1 561868..562257 + 129 26987218 rpsK PP_0477 - 30S ribosomal protein S11 474 55.72 -1 562273..562893 + 206 26987219 rpsD PP_0478 - 30S ribosomal protein S4 475 56.59 -1 562916..563917 + 333 26987220 rpoA PP_0479 - DNA-directed RNA polymerase subunit alpha 476 59.69 0 563960..564346 + 128 26987221 rplQ PP_0480 - 50S ribosomal protein L17 477 59.10 0 564519..565958 + 479 26987222 katA PP_0481 - catalase 478 57.85 0 566122..566586 + 154 26987223 - PP_0482 - bacterioferritin 479 61.59 0 566659..569493 - 944 26987224 uvrA PP_0483 - excinuclease ABC subunit A 480 61.94 0 569623..571017 + 464 26987225 - PP_0484 - major facilitator family transporter 481 63.00 0 571027..571572 + 181 26987226 ssb PP_0485 - single-strand DNA-binding protein 482 62.67 0 571663..573087 - 474 26987227 - PP_0486 - GntR family transcriptional regulator 483 59.40 0 573234..574031 + 265 26987228 - PP_0487 - hypothetical protein 484 61.55 0 574053..574814 + 253 26987229 - PP_0488 - short chain dehydrogenase/reductase family oxidoreductase 485 63.93 0 578030..578980 + 316 26987230 - PP_0490 - formate dehydrogenase, beta subunit 486 61.49 0 578977..579633 + 218 26987231 - PP_0491 - formate dehydrogenase, gamma subunit 487 64.79 0 579608..580564 + 318 26987232 - PP_0492 - formate dehydrogenase accessory protein FdhE 488 66.46 +1 580709..582136 + 475 26987233 selA PP_0493 - selenocysteine synthase 489 65.89 +1 582133..584055 + 640 26987234 selB PP_0494 - selenocysteine-specific translation elongation factor 490 63.94 0 584264..585253 - 329 26987235 ansB PP_0495 - asparaginase 491 62.65 0 585326..586768 - 480 26987236 - PP_0496 - amino acid carrier protein 492 59.88 0 586947..587756 + 269 26987237 - PP_0497 - Cro/CI family transcriptional regulator 493 57.31 -1 587768..588643 - 291 26987238 - PP_0498 - hypothetical protein 494 65.76 0 589875..590759 + 294 26987239 - PP_0500 - dTDP-4-dehydrorhamnose reductase 495 61.63 0 590752..591684 + 310 26987240 - PP_0501 - NAD-dependent epimerase/dehydratase 496 58.78 0 591715..592158 - 147 26987241 - PP_0502 - HxlR family transcriptional regulator 497 64.18 0 592261..593466 + 401 26987242 - PP_0503 - major facilitator family transporter 498 61.70 0 593454..594137 - 227 26987243 oprG PP_0504 - OmpW family protein 499 62.91 0 594247..594885 - 212 26987244 - PP_0505 - putative lipoprotein 500 62.32 0 594886..596151 - 421 26987245 - PP_0506 - hypothetical protein 501 67.79 +1 596151..596861 - 236 26987246 - PP_0507 - efflux ABC transporter ATP-binding protein 502 62.20 0 596862..597443 - 193 26987247 - PP_0508 - hypothetical protein 503 65.80 0 597574..597918 + 114 26987248 - PP_0509 - hypothetical protein 504 62.20 0 598070..598942 - 290 26987249 trx-1 PP_0510 - thioredoxin 505 66.15 +1 599634..600218 - 194 26987250 - PP_0512 - hypothetical protein 506 64.30 0 600187..600651 + 154 161378144 - PP_0513 - transcriptional regulator NrdR 507 68.25 +1 600648..601784 + 378 26987252 ribD PP_0514 - riboflavin biosynthesis protein RibD 508 61.86 0 601827..602492 + 221 26987253 ribE-1 PP_0515 - riboflavin synthase subunit alpha 509 64.50 0 602493..603602 + 369 26987254 ribBA-1 PP_0516 - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 510 61.64 0 603694..604170 + 158 26987255 ribH PP_0517 - riboflavin synthase subunit beta 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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