version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 368 62.88 0 450948..451871 - 307 26987113 - PP_0371 - LysR family transcriptional regulator 369 65.73 0 452082..453362 + 426 26987114 - PP_0372 - aminotransferase class-III 370 55.97 -1 453510..453668 + 52 26987115 - PP_0373 - hypothetical protein 371 55.97 -1 454297..454455 + 52 26987116 - PP_0374 - hypothetical protein 372 63.51 0 454815..456653 - 612 26987117 - PP_0375 - prolyl oligopeptidase family protein 373 62.25 0 456619..457749 - 376 26987118 pqqE PP_0376 - pyrroloquinoline quinone biosynthesis protein PqqE 374 61.59 0 457751..458026 - 91 26987119 pqqD PP_0377 - pyrroloquinoline quinone biosynthesis protein PqqD 375 64.81 0 458023..458778 - 251 26987120 pqqC PP_0378 - pyrroloquinoline quinone biosynthesis protein PqqC 376 64.58 0 458942..459853 - 303 26987121 pqqB PP_0379 - pyrroloquinoline quinone biosynthesis protein PqqB 377 50.00 -2 459932..460003 - 23 26987122 pqqA PP_0380 - coenzyme PQQ synthesis protein PqqA 378 65.19 0 460163..462463 - 766 26987123 pqqF PP_0381 - coenzyme PQQ biosynthesis protein PqqF 379 64.78 0 462604..463398 - 264 26987124 - PP_0382 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 380 63.70 0 463413..465095 - 560 26987125 - PP_0383 - amine oxidase 381 61.90 0 465349..465810 - 153 26987126 - PP_0384 - AsnC family transcriptional regulator 382 61.44 0 465998..466552 + 184 26987127 - PP_0385 - hypothetical protein 383 62.55 0 467212..470955 - 1247 26987128 - PP_0386 - sensory box protein 384 59.59 0 471083..472933 - 616 26987129 rpoD PP_0387 - RNA polymerase sigma factor RpoD 385 64.20 0 473001..474983 - 660 26987130 dnaG PP_0388 - DNA primase 386 55.56 -1 475288..475503 - 71 26987131 rpsU PP_0389 - 30S ribosomal protein S21 387 62.67 0 475708..476733 + 341 26987132 gcp PP_0390 - O-sialoglycoprotein endopeptidase 388 65.61 0 476751..477320 - 189 26987133 - PP_0391 - putative glycerol-3-phosphate acyltransferase PlsY 389 63.87 0 477395..477751 + 118 26987134 folB PP_0392 - dihydroneopterin aldolase 390 62.16 0 477742..478251 + 169 26987135 folK-1 PP_0393 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 391 63.41 0 478361..479467 - 368 26987136 cca PP_0394 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 392 59.21 0 479523..481091 - 522 26987137 - PP_0395 - hypothetical protein 393 58.43 0 481088..482410 - 440 26987138 - PP_0396 - hypothetical protein 394 55.95 -1 482515..484437 - 640 26987139 - PP_0397 - putative serine protein kinase, PrkA 395 63.36 0 484720..485052 - 110 26987140 glpE PP_0398 - thiosulfate sulfurtransferase 396 64.01 0 485067..485933 - 288 26987141 apaH PP_0399 - diadenosine tetraphosphatase 397 62.20 0 485933..486313 - 126 26987142 apaG PP_0400 - ApaG 398 64.05 0 486511..487314 - 267 26987143 ksgA PP_0401 - dimethyladenosine transferase 399 67.27 +1 487311..488300 - 329 26987144 pdxA PP_0402 - 4-hydroxythreonine-4-phosphate dehydrogenase 400 62.88 0 488297..489616 - 439 26987145 surA PP_0403 - survival protein SurA 401 63.24 0 492549..493568 + 339 26987146 - PP_0405 - aminoglycoside phosphotransferase 402 65.03 0 493565..494236 + 223 26987147 - PP_0406 - nucleotidyl transferase 403 66.67 +1 494238..495005 + 255 26987148 djlA PP_0407 - heat shock protein DnaJ domain protein 404 64.76 0 495033..496031 - 332 26987149 - PP_0408 - hypothetical protein 405 64.03 0 496127..498514 + 795 26987150 - PP_0409 - PAS/PAC sensor signal transduction histidine kinase 406 61.59 0 498525..499154 + 209 26987151 uhpA PP_0410 - LuxR family two component transcriptional regulator 407 63.91 0 499450..500574 + 374 26987152 - PP_0411 - spermidine/putrescine ABC transporter ATPase 408 59.90 0 500615..501649 + 344 26987153 - PP_0412 - polyamine ABC transporter, periplasmic polyamine-binding protein 409 60.66 0 501710..502957 + 415 26987154 - PP_0413 - binding-protein-dependent transport systems inner membrane component 410 61.96 0 502968..503795 + 275 26987155 - PP_0414 - binding-protein-dependent transport systems inner membrane component 411 60.29 0 503853..504620 + 255 26987156 rpe PP_0415 - ribulose-phosphate 3-epimerase 412 64.10 0 504617..505435 + 272 26987157 gph PP_0416 - phosphoglycolate phosphatase 413 61.54 0 505505..506986 + 493 26987158 trpE PP_0417 - anthranilate synthase component I 414 64.07 0 507119..509008 - 629 26987159 - PP_0418 - GDSL family lipase 415 59.60 0 509142..509240 + 32 26987160 - PP_0419 - hypothetical protein 416 58.59 0 509376..509969 + 197 26987161 trpG PP_0420 - anthranilate synthase component II 417 60.00 0 509979..511028 + 349 26987162 trpD PP_0421 - anthranilate phosphoribosyltransferase 418 62.11 0 511025..511858 + 277 26987163 trpC PP_0422 - indole-3-glycerol-phosphate synthase 419 65.67 0 512006..512710 + 234 26987164 - PP_0423 - hypothetical protein 420 59.53 0 512707..513351 - 214 26987165 crp PP_0424 - cAMP-regulatory protein 421 60.05 0 513542..513964 + 140 26987166 - PP_0425 - OsmC family protein 422 61.96 0 514041..515081 - 346 26987167 - PP_0426 - hypothetical protein 423 63.12 0 515092..515739 - 215 26987168 - PP_0427 - hypothetical protein 424 56.34 -1 515805..516143 - 112 26987169 - PP_0428 - histidine triad (HIT) protein 425 66.67 +1 516207..516989 - 260 26987170 - PP_0429 - short chain dehydrogenase/reductase family oxidoreductase 426 65.41 0 517057..518013 - 318 26987171 - PP_0430 - hypothetical protein 427 59.62 0 518042..518467 - 141 26987172 - PP_0431 - hypothetical protein 428 65.02 0 518610..519644 + 344 26987173 argC PP_0432 - N-acetyl-gamma-glutamyl-phosphate reductase 429 58.65 0 519744..520142 + 132 26987174 - PP_0433 - iron-sulfur cluster insertion protein ErpA 430 66.76 +1 520202..521293 - 363 26987175 anmK PP_0434 - anhydro-N-acetylmuramic acid kinase 431 61.48 0 521297..522724 - 475 26987176 - PP_0435 - M24/M37 family peptidase 432 59.33 0 522932..524131 + 399 26987177 tyrS PP_0436 - tyrosyl-tRNA synthetase 433 57.92 0 530085..531044 + 319 26987178 birA PP_0437 - biotin--protein ligase 434 59.87 0 531034..531783 + 249 26987179 - PP_0438 - pantothenate kinase 435 53.98 -1 531752..532216 + 154 26987180 - PP_0439 - hypothetical protein 436 56.53 -1 532734..533927 + 397 26987181 tuf PP_0440 - elongation factor Tu 437 55.83 -1 534102..534470 + 122 26987182 secE PP_0441 - preprotein translocase subunit SecE 438 54.49 -1 534480..535013 + 177 26987183 nusG PP_0442 - transcription antitermination protein NusG 439 58.33 0 535133..535564 + 143 26987184 rplK PP_0443 - 50S ribosomal protein L11 440 57.04 -1 535564..536259 + 231 26987185 rplA PP_0444 - 50S ribosomal protein L1 441 56.49 -1 536457..536957 + 166 26987186 rplJ PP_0445 - 50S ribosomal protein L10 442 52.19 -2 537035..537400 + 121 26987187 rplL PP_0446 - 50S ribosomal protein L7/L12 443 58.79 0 537621..541694 + 1357 26987188 rpoB PP_0447 - DNA-directed RNA polymerase subunit beta 444 58.69 0 541759..545958 + 1399 26987189 rpoC PP_0448 - DNA-directed RNA polymerase subunit beta' 445 57.26 -1 546170..546541 + 123 26987190 rpsL PP_0449 - 30S ribosomal protein S12 446 57.75 -1 546648..547118 + 156 26987191 rpsG PP_0450 - 30S ribosomal protein S7 447 56.38 -1 547149..549296 + 715 26987192 fusA PP_0451 - elongation factor G 448 57.29 -1 549324..550517 + 397 26987193 tuf PP_0452 - elongation factor Tu 449 53.53 -2 550659..550970 + 103 26987194 rpsJ PP_0453 - 30S ribosomal protein S10 450 57.39 -1 551051..551686 + 211 161378147 rplC PP_0454 - 50S ribosomal protein L3 451 57.05 -1 551699..552301 + 200 26987196 rplD PP_0455 - 50S ribosomal protein L4 452 50.00 -2 552298..552597 + 99 26987197 rplW PP_0456 - 50S ribosomal protein L23 453 58.18 0 552612..553436 + 274 26987198 rplB PP_0457 - 50S ribosomal protein L2 454 54.71 -1 553453..553728 + 91 26987199 rpsS PP_0458 - 30S ribosomal protein S19 455 57.66 -1 553740..554072 + 110 26987200 rplV PP_0459 - 50S ribosomal protein L22 456 54.00 -1 554086..554772 + 228 161378146 rpsC PP_0460 - 30S ribosomal protein S3 457 57.00 -1 554785..555198 + 137 26987202 rplP PP_0461 - 50S ribosomal protein L16 458 53.12 -2 555198..555389 + 63 161378145 rpmC PP_0462 - 50S ribosomal protein L29 459 54.68 -1 555392..555658 + 88 26987204 rpsQ PP_0463 - 30S ribosomal protein S17 460 55.28 -1 555682..556050 + 122 26987205 rplN PP_0464 - 50S ribosomal protein L14 461 52.06 -2 556062..556376 + 104 26987206 rplX PP_0465 - 50S ribosomal protein L24 462 56.11 -1 556397..556936 + 179 26987207 rplE PP_0466 - 50S ribosomal protein L5 463 59.48 0 556950..557255 + 101 26987208 rpsN PP_0467 - 30S ribosomal protein S14 464 57.51 -1 557464..557856 + 130 26987209 rpsH PP_0468 - 30S ribosomal protein S8 465 56.55 -1 557869..558402 + 177 26987210 rplF PP_0469 - 50S ribosomal protein L6 466 58.69 0 558413..558763 + 116 26987211 rplR PP_0470 - 50S ribosomal protein L18 467 56.89 -1 558767..559267 + 166 26987212 rpsE PP_0471 - 30S ribosomal protein S5 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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