version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3884 58.18 0 4429728..4430045 + 105 26990629 - PP_3924 - sterol-binding domain protein 3885 62.45 0 4430229..4431296 + 355 26990630 - PP_3925 - aminoglycoside phosphotransferase 3886 61.46 0 4431333..4432100 + 255 26990631 - PP_3926 - short chain dehydrogenase 3887 62.77 0 4432101..4432922 - 273 26990632 - PP_3927 - methyltransferase type 12 3888 59.79 0 4433560..4433850 + 96 26990633 - PP_3928 - hypothetical protein 3889 59.18 0 4434013..4434279 + 88 26990634 - PP_3929 - hypothetical protein 3890 71.25 +2 4434353..4434745 + 130 26990635 - PP_3930 - 17 kDa surface antigen 3891 63.39 0 4434872..4436701 + 609 26990636 - PP_3931 - sodium/sulfate symporter family protein 3892 67.00 +1 4437054..4438262 + 402 26990637 - PP_3932 - GGDEF domain-containing protein 3893 63.78 0 4438264..4439025 - 253 26990638 - PP_3933 - hypothetical protein 3894 65.61 0 4439088..4440029 + 313 26990639 - PP_3934 - LysR family transcriptional regulator 3895 56.19 -1 4440130..4440339 + 69 26990640 - PP_3935 - hypothetical protein 3896 52.08 -2 4440336..4440479 + 47 26990641 - PP_3936 - hypothetical protein 3897 54.47 -1 4440485..4440607 - 40 26990642 - PP_3937 - hypothetical protein 3898 52.59 -2 4440878..4441012 + 44 26990643 - PP_3938 - hypothetical protein 3899 61.87 0 4441236..4442528 - 430 26990644 - PP_3939 - porin, putative 3900 61.49 0 4442667..4443980 - 437 26990645 - PP_3940 - major facilitator family transporter 3901 66.04 +1 4444189..4444830 - 213 26990646 - PP_3941 - isochorismatase superfamily hydrolase 3902 64.54 0 4444846..4445598 - 250 26990647 - PP_3942 - maleate cis-trans isomerase 3903 65.43 0 4445612..4446418 - 268 26990648 - PP_3943 - alpha/beta fold family hydrolase 3904 63.45 0 4446415..4447563 - 382 26990649 nahG PP_3944 - salicylate hydroxylase 3905 64.58 0 4447885..4448937 + 350 26990650 - PP_3945 - hypothetical protein 3906 64.78 0 4449008..4449484 + 158 26990651 - PP_3946 - MarR family transcriptional regulator 3907 66.46 +1 4449926..4450399 + 157 26990652 - PP_3947 - (2Fe-2S)-binding domain protein 3908 65.82 0 4450396..4453959 + 1187 26990653 - PP_3948 - aldehyde dehydrogenase family protein, putative/cytochrome c family protein, putative 3909 59.47 0 4453963..4454601 - 212 26990654 - PP_3949 - TetR family transcriptional regulator 3910 63.13 0 4454806..4456983 - 725 26990655 - PP_3950 - methyl-accepting chemotaxis transducer 3911 63.94 0 4457362..4458057 + 231 26990656 pcaI PP_3951 - 3-oxoadipate CoA-transferase, subunit A 3912 63.08 0 4458066..4458707 + 213 26990657 pcaJ PP_3952 - 3-oxoadipate CoA-transferase, subunit B 3913 58.97 0 4458975..4460429 + 484 26990658 - PP_3953 - TrkH family potassium uptake protein 3914 58.68 0 4460534..4461484 + 316 26990659 - PP_3954 - periplasmic binding protein, putative 3915 61.14 0 4461512..4463539 + 675 26990660 - PP_3955 - transporter, putative 3916 61.39 0 4463536..4463952 + 138 26990661 - PP_3956 - hypothetical protein 3917 58.66 0 4463980..4465953 - 657 26990662 - PP_3957 - choline/carnitine/betaine transporter family protein 3918 61.97 0 4466257..4467618 + 453 26990663 - PP_3958 - sodium-proton antiporter, NhaA family 3919 62.63 0 4467755..4469116 + 453 26990664 - PP_3959 - voltage-gated chloride channel family protein 3920 63.70 0 4469218..4469823 - 201 26990665 - PP_3960 - TetR family transcriptional regulator 3921 65.18 0 4469980..4471188 - 402 26990666 - PP_3961 - major facilitator transporter 3922 56.69 -1 4471971..4472792 + 273 26990667 - PP_3962 - putative lipoprotein 3923 55.96 -1 4473459..4473785 + 108 26990668 - PP_3963 - hypothetical protein 3924 58.79 0 4473999..4475534 - 511 26990669 - PP_3964 - ISPpu14, transposase Orf3 3925 63.39 0 4475598..4475933 - 111 26990670 - PP_3965 - ISPpu14, transposase Orf2 3926 57.32 -1 4475930..4476250 - 106 26990671 - PP_3966 - ISPpu14, transposase Orf1 3927 56.01 -1 4476426..4476866 + 146 26990672 - PP_3967 - MutT/nudix family protein 3928 54.96 -1 4476872..4477990 - 372 26990673 - PP_3968 - sensor histidine kinase 3929 55.92 -1 4478138..4478500 + 120 26990674 - PP_3969 - response regulator 3930 58.35 0 4478649..4479851 + 400 26990675 - PP_3970 - alcohol dehydrogenase GroES domain protein 3931 61.54 0 4479865..4480098 + 77 26990676 - PP_3971 - hypothetical protein 3932 57.92 0 4480131..4481456 + 441 26990677 - PP_3972 - short chain dehydrogenase 3933 56.21 -1 4481687..4481839 + 50 26990678 - PP_3973 - hypothetical protein 3934 59.98 0 4481994..4482980 + 328 26990679 - PP_3974 - LysR family transcriptional regulator 3935 58.66 0 4483000..4483461 - 153 26990680 - PP_3975 - hypothetical protein 3936 58.81 0 4483669..4484355 + 228 26990681 - PP_3976 - isochorismatase superfamily hydrolase 3937 52.76 -2 4484824..4486125 + 433 26990682 - PP_3977 - hypothetical protein 3938 57.31 -1 4486128..4486298 + 56 26990683 - PP_3978 - hypothetical protein 3939 57.32 -1 4486395..4486715 + 106 26990684 - PP_3979 - ISPpu14, transposase Orf1 3940 62.20 0 4486712..4487047 + 111 26990685 - PP_3980 - ISPpu14, transposase Orf2 3941 58.79 0 4487111..4488646 + 511 26990686 - PP_3981 - ISPpu14, transposase Orf3 3942 55.67 -1 4489217..4491862 - 881 26990687 - PP_3982 - hypothetical protein 3943 54.15 -1 4492117..4492899 + 260 26990688 - PP_3983 - hypothetical protein 3944 50.96 -2 4493378..4493638 - 86 26990689 - PP_3984 - ISPpu13, transposase Orf3 3945 58.97 0 4493707..4495239 - 510 26990690 - PP_3985 - ISPpu13, transposase Orf2 3946 55.74 -1 4495258..4495614 - 118 26990691 - PP_3986 - ISPpu13, transposase Orf1 3947 54.27 -1 4495690..4496649 + 319 26990692 - PP_3987 - phage integrase family site specific recombinase 3948 46.66 -2 4497954..4500002 - 682 26990693 - PP_3988 - hypothetical protein 3949 45.65 -2 4500014..4501060 - 348 26990694 - PP_3989 - DNA-cytosine methyltransferase 3950 58.48 0 4501536..4502207 + 223 26990695 - PP_3990 - hypothetical protein 3951 57.94 0 4502208..4502333 + 41 26990696 - PP_3991 - hypothetical protein 3952 62.32 0 4502371..4503750 + 459 26990697 - PP_3992 - xanthine/uracil permease family protein 3953 67.18 +1 4503848..4504240 + 130 26990698 dsrE PP_3993 - hypothetical protein 3954 65.56 0 4504242..4504601 + 119 26990699 - PP_3994 - hypothetical protein 3955 65.32 0 4504601..4504897 + 98 26990700 - PP_3995 - hypothetical protein 3956 61.31 0 4504894..4505229 + 111 26990701 - PP_3996 - hypothetical protein 3957 64.67 0 4505226..4506227 + 333 26990702 - PP_3997 - hypothetical protein 3958 59.71 0 4506304..4507281 + 325 26990703 - PP_3998 - glutathione S-transferase domain-containing protein 3959 66.38 +1 4507388..4508779 - 463 26990704 cobA-2 PP_3999 - uroporphyrin-III C-methyltransferase 3960 63.31 0 4508780..4510060 - 426 26990705 serS PP_4000 - seryl-tRNA synthetase 3961 61.87 0 4510091..4510465 - 124 26990706 crcB PP_4001 - chromosome condensation/camphor resistance protein CrcB 3962 65.38 0 4510462..4511787 - 441 26990707 - PP_4002 - recombination factor protein RarA 3963 59.97 0 4511800..4512486 - 228 26990708 lolA PP_4003 - outer-membrane lipoprotein carrier protein 3964 63.87 0 4512486..4514990 - 834 26990709 ftsK PP_4004 - cell divisionFtsK/SpoIIIE 3965 66.08 +1 4515398..4516078 + 226 26990710 aat PP_4005 - leucyl/phenylalanyl-tRNA--protein transferase 3966 61.86 0 4516135..4516842 + 235 26990711 - PP_4006 - arginyl-tRNA-protein transferase 3967 57.08 -1 4516944..4517162 + 72 26990712 infA PP_4007 - translation initiation factor IF-1 3968 61.34 0 4517248..4519518 - 756 26990713 clpA PP_4008 - ATP-dependent Clp protease, ATP-binding subunit clpA 3969 53.72 -2 4519549..4519911 - 120 26990714 clpS PP_4009 - ATP-dependent Clp protease adaptor protein ClpS 3970 55.43 -1 4520142..4520408 + 88 26990715 cspD PP_4010 - cold-shock protein CspD 3971 60.22 0 4520480..4521736 - 418 26990716 icd PP_4011 - isocitrate dehydrogenase, NADP-dependent 3972 62.98 0 4522151..4524376 + 741 26990717 - PP_4012 - isocitrate dehydrogenase, NADP-dependent 3973 66.21 +1 4524568..4525008 + 146 26990718 - PP_4013 - NUDIX hydrolase 3974 64.98 0 4525068..4526192 + 374 26990719 trmU PP_4014 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3975 65.55 0 4526189..4526815 + 208 26990720 - PP_4015 - hypothetical protein 3976 63.75 0 4526953..4528323 + 456 26990721 purB PP_4016 - adenylosuccinate lyase 3977 64.11 0 4528399..4529571 + 390 26990722 - PP_4017 - cupin 4 family protein 3978 62.47 0 4529564..4529992 + 142 26990723 - PP_4018 - acetyltransferase 3979 66.06 +1 4530160..4532121 + 653 26990724 topB PP_4019 - DNA topoisomerase III 3980 65.89 +1 4532267..4533556 + 429 26990725 - PP_4020 - FAD dependent oxidoreductase 3981 63.18 0 4533729..4534559 + 276 26990726 est PP_4021 - alpha/beta hydrolase fold 3982 46.21 -2 4534679..4535470 + 263 26990727 - PP_4022 - hypothetical protein 3983 55.56 -1 4536285..4536644 + 119 26990728 - PP_4024 - ISPpu15, transposase Orf1 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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