version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 306 58.95 0 369972..370502 + 176 26987051 - PP_0309 - hypothetical protein 307 62.20 0 370518..372578 + 686 26987052 - PP_0310 - oxidoreductase, FMN-binding 308 63.65 0 372757..374709 + 650 26987053 - PP_0311 - iron-sulfur cluster-binding protein 309 66.67 +1 374955..375941 + 328 26987054 - PP_0312 - electron transfer flavoprotein, alpha subunit 310 66.54 +1 375952..376722 + 256 26987055 - PP_0313 - electron transfer flavoprotein, beta subunit, putative 311 57.24 -1 377324..378055 + 243 26987056 - PP_0314 - hypothetical protein 312 60.79 0 378120..379412 - 430 26987057 - PP_0315 - Rieske (2Fe-2S) domain protein 313 61.25 0 379702..380808 + 368 26987058 - PP_0316 - oxidoreductase FAD-binding domain protein 314 63.16 0 380917..382542 - 541 26987059 - PP_0317 - methyl-accepting chemotaxis sensory transducer 315 59.31 0 382809..383039 + 76 26987060 - PP_0318 - hypothetical protein 316 57.76 -1 383036..383338 + 100 26987061 - PP_0319 - hypothetical protein 317 63.78 0 383521..385458 + 645 26987062 - PP_0320 - methyl-accepting chemotaxis sensory transducer 318 62.92 0 385493..386533 - 346 26987063 - PP_0321 - threonine aldolase 319 63.16 0 386859..388112 + 417 26987064 glyA-1 PP_0322 - serine hydroxymethyltransferase 320 63.87 0 388128..389378 + 416 26987065 soxB PP_0323 - sarcosine oxidase, beta subunit family 321 59.52 0 389393..389728 + 111 26987066 soxD PP_0324 - sarcosine oxidase, delta subunit family 322 64.05 0 389725..392739 + 1004 26987067 soxA PP_0325 - sarcosine oxidase, alpha subunit family 323 63.19 0 392814..393446 + 210 26987068 soxG PP_0326 - sarcosine oxidase, gamma subunit family 324 59.91 0 393458..394315 + 285 26987069 purU-1 PP_0327 - formyltetrahydrofolate deformylase 325 64.00 0 394617..395816 + 399 26987070 fdhA PP_0328 - formaldehyde dehydrogenase, glutathione-independent 326 47.40 -2 396020..396943 - 307 26987071 - PP_0329 - hypothetical protein 327 59.50 0 396918..397712 + 264 26987072 - PP_0330 - hypothetical protein 328 49.47 -2 397733..398482 - 249 26987073 - PP_0331 - hypothetical protein 329 61.26 0 398694..399581 - 295 26987074 - PP_0332 - phospholipid/glycerol acyltransferase 330 60.88 0 399763..400263 + 166 26987075 - PP_0333 - hypothetical protein 331 58.55 0 400413..401471 + 352 26987076 - PP_0334 - ISPpu11, transposase 332 64.74 0 401901..402524 - 207 26987077 - PP_0335 - glutathione S-transferase family protein 333 63.83 0 402528..403196 - 222 26987078 msrA PP_0336 - methionine sulfoxide reductase A 334 63.73 0 403365..406055 - 896 26987079 - PP_0337 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 335 65.57 0 406363..408003 - 546 26987080 aceF PP_0338 - dihydrolipoamide acetyltransferase 336 60.92 0 408017..410662 - 881 26987081 aceE PP_0339 - pyruvate dehydrogenase subunit E1 337 64.69 0 411046..413979 + 977 26987082 glnE PP_0340 - (glutamate--ammonia-ligase) adenylyltransferase 338 65.81 0 414182..415231 + 349 26987083 waaF PP_0341 - lipopolysaccharide heptosyltransferase II 339 64.78 0 415232..416290 + 352 26987084 waaC PP_0342 - lipopolysaccharide heptosyltransferase I 340 62.67 0 416290..417414 + 374 26987085 waaG PP_0343 - lipopolysaccharide core biosynthesis protein WaaG 341 64.31 0 417411..418217 + 268 26987086 waaP PP_0344 - lipopolysaccharide kinase 342 62.86 0 418217..418951 + 244 26987087 - PP_0345 - lipopolysaccharide kinase 343 65.74 0 418948..419700 + 250 26987088 - PP_0346 - lipopolysaccharide kinase 344 64.31 0 419700..421142 + 480 26987089 - PP_0347 - hypothetical protein 345 61.25 0 421160..423946 - 928 26987090 - PP_0348 - hypothetical protein 346 63.61 0 424196..425308 - 370 26987091 - PP_0349 - PepSY-associated TM helix domain protein 347 62.06 0 425365..427797 - 810 26987092 - PP_0350 - TonB-dependent siderophore receptor 348 68.23 +1 428049..429005 - 318 26987093 - PP_0351 - anti-FecI sigma factor, FecR 349 65.70 0 429002..429520 - 172 26987094 - PP_0352 - RNA polymerase sigma factor 350 65.68 0 429668..430378 - 236 26987095 - PP_0353 - DNA polymerase III, epsilon subunit 351 64.24 0 430375..432312 - 645 26987096 - PP_0354 - CBS domain-containing protein 352 57.19 -1 432405..432974 + 189 26987097 - PP_0355 - response regulator receiver protein 353 63.13 0 433021..435198 - 725 26987098 glcB PP_0356 - malate synthase G 354 61.66 0 435648..436166 + 172 26987099 - PP_0357 - ACT domain-containing protein 355 63.74 0 436399..437286 - 295 26987100 rarD-1 PP_0358 - RarD protein, DMT superfamily transporter 356 65.08 0 437351..438358 - 335 26987101 - PP_0359 - serine/threonine protein kinase 357 66.54 +1 438424..439188 - 254 26987102 modR PP_0360 - ModE family transcriptional regulator 358 62.57 0 439238..439969 - 243 26987103 - PP_0361 - competence protein ComF, putative 359 62.51 0 440059..441117 + 352 26987104 bioB PP_0362 - biotin synthase 360 67.43 +1 441119..442291 + 390 26987105 bioF PP_0363 - 8-amino-7-oxononanoate synthase 361 64.07 0 442284..443015 + 243 26987106 bioH PP_0364 - carboxylesterase 362 66.30 +1 443008..443826 + 272 26987107 bioC PP_0365 - biotin biosynthesis protein BioC 363 63.14 0 443837..444517 + 226 26987108 bioD PP_0366 - dithiobiotin synthetase 364 62.50 0 444691..445026 + 111 26987109 - PP_0367 - hypothetical protein 365 62.35 0 445314..447119 + 601 26987110 - PP_0368 - acyl-CoA dehydrogenase domain-containing protein 366 63.76 0 447502..448704 + 400 26987111 - PP_0369 - GGDEF domain-containing protein 367 62.96 0 448829..450607 + 592 26987112 - PP_0370 - acyl-CoA dehydrogenase domain-containing protein 368 62.88 0 450948..451871 - 307 26987113 - PP_0371 - LysR family transcriptional regulator 369 65.73 0 452082..453362 + 426 26987114 - PP_0372 - aminotransferase class-III 370 55.97 -1 453510..453668 + 52 26987115 - PP_0373 - hypothetical protein 371 55.97 -1 454297..454455 + 52 26987116 - PP_0374 - hypothetical protein 372 63.51 0 454815..456653 - 612 26987117 - PP_0375 - prolyl oligopeptidase family protein 373 62.25 0 456619..457749 - 376 26987118 pqqE PP_0376 - pyrroloquinoline quinone biosynthesis protein PqqE 374 61.59 0 457751..458026 - 91 26987119 pqqD PP_0377 - pyrroloquinoline quinone biosynthesis protein PqqD 375 64.81 0 458023..458778 - 251 26987120 pqqC PP_0378 - pyrroloquinoline quinone biosynthesis protein PqqC 376 64.58 0 458942..459853 - 303 26987121 pqqB PP_0379 - pyrroloquinoline quinone biosynthesis protein PqqB 377 50.00 -2 459932..460003 - 23 26987122 pqqA PP_0380 - coenzyme PQQ synthesis protein PqqA 378 65.19 0 460163..462463 - 766 26987123 pqqF PP_0381 - coenzyme PQQ biosynthesis protein PqqF 379 64.78 0 462604..463398 - 264 26987124 - PP_0382 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 380 63.70 0 463413..465095 - 560 26987125 - PP_0383 - amine oxidase 381 61.90 0 465349..465810 - 153 26987126 - PP_0384 - AsnC family transcriptional regulator 382 61.44 0 465998..466552 + 184 26987127 - PP_0385 - hypothetical protein 383 62.55 0 467212..470955 - 1247 26987128 - PP_0386 - sensory box protein 384 59.59 0 471083..472933 - 616 26987129 rpoD PP_0387 - RNA polymerase sigma factor RpoD 385 64.20 0 473001..474983 - 660 26987130 dnaG PP_0388 - DNA primase 386 55.56 -1 475288..475503 - 71 26987131 rpsU PP_0389 - 30S ribosomal protein S21 387 62.67 0 475708..476733 + 341 26987132 gcp PP_0390 - O-sialoglycoprotein endopeptidase 388 65.61 0 476751..477320 - 189 26987133 - PP_0391 - putative glycerol-3-phosphate acyltransferase PlsY 389 63.87 0 477395..477751 + 118 26987134 folB PP_0392 - dihydroneopterin aldolase 390 62.16 0 477742..478251 + 169 26987135 folK-1 PP_0393 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 391 63.41 0 478361..479467 - 368 26987136 cca PP_0394 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 392 59.21 0 479523..481091 - 522 26987137 - PP_0395 - hypothetical protein 393 58.43 0 481088..482410 - 440 26987138 - PP_0396 - hypothetical protein 394 55.95 -1 482515..484437 - 640 26987139 - PP_0397 - putative serine protein kinase, PrkA 395 63.36 0 484720..485052 - 110 26987140 glpE PP_0398 - thiosulfate sulfurtransferase 396 64.01 0 485067..485933 - 288 26987141 apaH PP_0399 - diadenosine tetraphosphatase 397 62.20 0 485933..486313 - 126 26987142 apaG PP_0400 - ApaG 398 64.05 0 486511..487314 - 267 26987143 ksgA PP_0401 - dimethyladenosine transferase 399 67.27 +1 487311..488300 - 329 26987144 pdxA PP_0402 - 4-hydroxythreonine-4-phosphate dehydrogenase 400 62.88 0 488297..489616 - 439 26987145 surA PP_0403 - survival protein SurA 401 63.24 0 492549..493568 + 339 26987146 - PP_0405 - aminoglycoside phosphotransferase 402 65.03 0 493565..494236 + 223 26987147 - PP_0406 - nucleotidyl transferase 403 66.67 +1 494238..495005 + 255 26987148 djlA PP_0407 - heat shock protein DnaJ domain protein 404 64.76 0 495033..496031 - 332 26987149 - PP_0408 - hypothetical protein 405 64.03 0 496127..498514 + 795 26987150 - PP_0409 - PAS/PAC sensor signal transduction histidine kinase 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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