version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3370 62.15 0 3853427..3853714 + 95 26990115 - PP_3401 - hypothetical protein 3371 60.61 0 3853796..3854191 - 131 26990116 - PP_3402 - hypothetical protein 3372 64.30 0 3854312..3855199 - 295 26990117 - PP_3403 - Pirin domain protein 3373 63.12 0 3855296..3856168 - 290 26990118 - PP_3404 - alpha/beta hydrolase fold 3374 61.27 0 3856190..3856819 - 209 26990119 - PP_3405 - lysine exporter protein LysE/YggA 3375 63.33 0 3856944..3857423 + 159 26990120 - PP_3406 - acetyltransferase 3376 62.77 0 3857420..3857650 + 76 26990121 - PP_3407 - hypothetical protein 3377 66.15 +1 3858740..3859129 + 129 26990122 - PP_3409 - cobalamin biosynthesis protein cobE, putative 3378 64.94 0 3859164..3859916 + 250 26990123 cobM PP_3410 - precorrin-4 C11-methyltransferase 3379 63.79 0 3859983..3860225 + 80 26990124 - PP_3411 - hypothetical protein 3380 60.33 0 3860447..3861061 + 204 26990125 - PP_3412 - LuxR family DNA-binding response regulator 3381 62.31 0 3861075..3864356 + 1093 26990126 - PP_3413 - Hpt sensor hybrid histidine kinase 3382 61.97 0 3864322..3865641 - 439 26990127 - PP_3414 - methyl-accepting chemotaxis transducer/sensory box protein 3383 64.80 0 3865855..3866874 - 339 26990128 - PP_3415 - LacI family transcription regulator 3384 65.93 +1 3867081..3867620 + 179 26990129 gnuK PP_3416 - carbohydrate kinase, thermoresistant glucokinase family 3385 61.94 0 3867732..3869084 + 450 26990130 gntP PP_3417 - gluconate transporter 3386 64.12 0 3869081..3869473 + 130 26990131 - PP_3418 - hypothetical protein 3387 61.48 0 3869488..3870915 - 475 26990132 - PP_3419 - two component, sigma54 specific, transcriptional regulator, Fis family 3388 61.71 0 3870884..3872377 - 497 26990133 - PP_3420 - sensor histidine kinase 3389 61.09 0 3872685..3874136 - 483 26990134 - PP_3421 - sensor histidine kinase 3390 63.30 0 3874311..3874904 - 197 26990135 ltg PP_3422 - lytic transglycosylase 3391 64.51 0 3875006..3875515 + 169 26990136 xcpT-2 PP_3423 - general secretion pathway protein G 3392 66.83 +1 3875506..3876717 + 403 26990137 xcpS-2 PP_3424 - type II secretion system protein 3393 66.59 +1 3876909..3878150 + 413 26990138 mexE PP_3425 - efflux transporter, RND family, MFP subunit 3394 62.96 0 3878163..3881342 + 1059 26990139 mexF PP_3426 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3395 67.16 +1 3881339..3882754 + 471 26990140 oprN PP_3427 - RND efflux system, outer membrane lipoprotein, NodT family 3396 66.00 +1 3882835..3884034 + 399 26990141 - PP_3428 - TPR domain-containing protein 3397 62.83 0 3884113..3885729 + 538 26990142 - PP_3429 - histidine kinase 3398 61.57 0 3885736..3887853 - 705 26990143 - PP_3430 - PAS/PAC sensor hybrid histidine kinase 3399 57.06 -1 3887993..3888679 + 228 26990144 - PP_3431 - ThiJ/PfpI domain protein 3400 57.62 -1 3888809..3889615 + 268 26990145 - PP_3432 - hypothetical protein 3401 58.50 0 3889639..3890715 - 358 26990146 hpd PP_3433 - 4-hydroxyphenylpyruvate dioxygenase 3402 54.63 -1 3890742..3890849 - 35 26990147 - PP_3434 - hypothetical protein 3403 63.64 0 3891014..3892600 + 528 26990148 - PP_3435 - diguanylate phosphodiesterase 3404 62.16 0 3892634..3893521 + 295 26990149 rarD-2 PP_3436 - RarD protein, DMT superfamily transporter 3405 63.10 0 3893484..3895055 - 523 26990150 - PP_3437 - CBS domain-containing protein 3406 63.92 0 3895347..3895928 + 193 26990151 - PP_3438 - lysine exporter protein LysE/YggA 3407 63.13 0 3895893..3896741 - 282 26990152 - PP_3439 - AraC family transcriptional regulator 3408 60.86 0 3896789..3897907 - 372 26990153 - PP_3440 - hypothetical protein 3409 60.43 0 3897981..3899135 - 384 26990154 - PP_3441 - hypothetical protein 3410 50.60 -2 3899424..3899591 - 55 26990155 - PP_3442 - hypothetical protein 3411 63.46 0 3899590..3901209 + 539 26990156 - PP_3443 - glyceraldehyde-3-phosphate dehydrogenase, putative 3412 61.67 0 3901320..3901799 + 159 26990157 - PP_3444 - glyoxalase/bleomycin resistance protein/dioxygenase 3413 62.86 0 3901824..3903032 + 402 26990158 - PP_3445 - hypothetical protein 3414 65.16 0 3903147..3904739 - 530 26990159 ilvA-1 PP_3446 - threonine dehydratase 3415 62.04 0 3904889..3905320 - 143 26990160 - PP_3447 - transmembrane pair domain protein 3416 62.53 0 3905513..3907687 + 724 26990161 nfrB PP_3448 - bacteriophage N4 adsorption protein B 3417 65.74 0 3907684..3908115 + 143 26990162 - PP_3449 - hypothetical protein 3418 68.03 +1 3908049..3910688 + 879 161378127 - PP_3450 - hypothetical protein 3419 67.02 +1 3910688..3911527 + 279 26990164 - PP_3451 - hypothetical protein 3420 61.45 0 3911652..3912743 + 363 26990165 - PP_3452 - GGDEF domain-containing protein 3421 64.67 0 3912774..3914075 - 433 26990166 - PP_3453 - integral membrane sensor signal transduction histidine kinase 3422 63.10 0 3914082..3914921 - 279 26990167 - PP_3454 - winged helix family two component transcriptional regulator 3423 68.96 +1 3915029..3916204 + 391 26990168 - PP_3455 - efflux transporter, RND family, MFP subunit 3424 65.23 0 3916216..3919344 + 1042 26990169 - PP_3456 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3425 66.32 +1 3919406..3919981 + 191 26990170 mobA PP_3457 - molybdopterin-guanine dinucleotide biosynthesis protein A 3426 64.36 0 3920074..3921762 - 562 26990171 - PP_3458 - acyl-CoA synthetase 3427 60.61 0 3921902..3923041 - 379 26990172 - PP_3459 - hypothetical protein 3428 63.58 0 3923055..3923378 - 107 26990173 - PP_3460 - hypothetical protein 3429 62.40 0 3923380..3924810 - 476 26990174 - PP_3461 - radical SAM domain protein 3430 63.42 0 3924835..3926526 + 563 26990175 - PP_3462 - hypothetical protein 3431 65.33 0 3926828..3928321 + 497 26990176 - PP_3463 - aldehyde dehydrogenase 3432 64.84 0 3928461..3929774 + 437 26990177 - PP_3464 - hypothetical protein 3433 67.68 +1 3931088..3931780 + 230 26990178 - PP_3465 - hypothetical protein 3434 64.91 0 3931764..3933473 - 569 26990179 - PP_3466 - efflux ABC transporter ATP-binding protein 3435 67.24 +1 3933499..3935409 - 636 26990180 - PP_3467 - GAF modulated sigma54 specific transcriptional regulator, Fis family 3436 60.16 0 3935687..3936070 - 127 26990181 - PP_3468 - hypothetical protein 3437 49.43 -2 3936212..3937180 + 322 26990182 - PP_3469 - hypothetical protein 3438 47.37 -2 3937996..3938793 + 265 26990183 - PP_3471 - hypothetical protein 3439 64.08 0 3938975..3939823 - 282 26990184 csgG PP_3472 - curli production assembly/transport component CsgG 3440 61.84 0 3939858..3940271 - 137 26990185 - PP_3473 - curli fiber protein CsgF, putative 3441 62.69 0 3940268..3940669 - 133 26990186 - PP_3474 - curli assembly protein CsgE 3442 64.78 0 3940666..3941196 - 176 26990187 - PP_3475 - hypothetical protein 3443 63.82 0 3941168..3941554 - 128 26990188 - PP_3476 - type II secretion system protein G 3444 65.62 0 3941548..3942027 - 159 26990189 - PP_3477 - hypothetical protein 3445 64.74 0 3942024..3943889 - 621 26990190 - PP_3478 - type II and III secretion system protein 3446 63.11 0 3943877..3944410 + 177 26990191 - PP_3479 - hypothetical protein 3447 65.43 0 3944392..3944955 - 187 26990192 - PP_3480 - hypothetical protein 3448 67.03 +1 3944942..3945484 - 180 26990193 - PP_3481 - hypothetical protein 3449 67.90 +1 3945486..3946295 - 269 26990194 - PP_3482 - hypothetical protein 3450 64.83 0 3946249..3948045 - 598 26990195 - PP_3483 - type II secretion system protein E 3451 60.83 0 3948106..3948636 - 176 26990196 - PP_3484 - response regulator receiver protein 3452 61.84 0 3948889..3949530 - 213 26990197 - PP_3485 - hypothetical protein 3453 68.51 +1 3949543..3951222 - 559 26990198 - PP_3486 - cytochrome c, putative 3454 65.32 0 3951228..3951893 - 221 26990199 - PP_3487 - electron transport protein SCO1/SenC 3455 63.77 0 3951890..3952546 - 218 26990200 - PP_3488 - electron transport protein SCO1/SenC 3456 65.69 0 3952501..3954438 + 645 26990201 - PP_3489 - hypothetical protein 3457 64.16 0 3954538..3960450 - 1970 26990202 - PP_3490 - hypothetical protein 3458 66.11 +1 3960710..3961783 + 357 26990203 - PP_3491 - enoly-coenzyme A hydratase/isomerase family protein 3459 63.72 0 3961800..3962951 + 383 26990204 acdA PP_3492 - acyl-CoA dehydrogenase domain-containing protein 3460 64.52 0 3963068..3964000 - 310 26990205 - PP_3493 - LysR family transcriptional regulator 3461 59.39 0 3964120..3964380 + 86 26990206 - PP_3494 - hypothetical protein 3462 64.50 0 3964382..3965074 - 230 26990207 - PP_3495 - hypothetical protein 3463 63.16 0 3965193..3965591 + 132 26990208 - PP_3496 - endoribonuclease L-PSP 3464 63.12 0 3965805..3967805 + 666 26990209 - PP_3497 - U32 family peptidase 3465 58.26 0 3967990..3969048 + 352 26990210 - PP_3498 - ISPpu11, transposase 3466 57.32 -1 3969363..3969683 + 106 26990211 - PP_3499 - ISPpu14, transposase Orf1 3467 62.20 0 3969680..3970015 + 111 26990212 - PP_3500 - ISPpu14, transposase Orf2 3468 58.79 0 3970079..3971614 + 511 26990213 - PP_3501 - ISPpu14, transposase Orf3 3469 57.56 -1 3971994..3972959 + 321 26990214 - PP_3502 - ISPpu10, transposase 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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