version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3307 63.64 0 3775577..3775972 - 131 26990052 - PP_3337 - hypothetical protein 3308 62.22 0 3776046..3776315 + 89 26990053 - PP_3338 - ubiquinol oxidase subunit II-related protein 3309 62.25 0 3776458..3776865 + 135 26990054 - PP_3339 - hypothetical protein 3310 61.70 0 3776944..3778995 + 683 26990055 - PP_3340 - TonB-dependent receptor, putative 3311 65.23 0 3779043..3779459 - 138 26990056 - PP_3341 - nickel responsive regulator 3312 65.33 0 3779547..3781121 + 524 26990057 nikA PP_3342 - nickel ABC transporter, periplasmic nickel-binding protein 3313 65.39 0 3781123..3782064 + 313 26990058 nikB PP_3343 - nickel transporter permease NikB 3314 66.90 +1 3782061..3782906 + 281 26990059 nikC PP_3344 - nickel transporter permease NikC 3315 64.33 0 3782907..3783677 + 256 26990060 nikD PP_3345 - nickel transporter ATP-binding protein 3316 66.79 +1 3783674..3784495 + 273 26990061 nikE PP_3346 - nickel transporter ATP-binding protein 3317 60.00 0 3784670..3784804 - 44 26990062 - PP_3347 - hypothetical protein 3318 61.87 0 3784803..3785948 + 381 26990063 - PP_3348 - GGDEF domain-containing protein 3319 66.26 +1 3785964..3787205 - 413 26990064 - PP_3349 - putative 3-hydroxyphenylpropionic transporter MhpT 3320 63.86 0 3787240..3788631 - 463 26990065 - PP_3350 - hypothetical protein 3321 50.00 -2 3788702..3788809 - 35 26990066 - PP_3351 - hypothetical protein 3322 64.98 0 3788893..3790557 + 554 26990067 - PP_3352 - arylsulfatase, putative 3323 66.78 +1 3790704..3791579 + 291 26990068 - PP_3353 - hypothetical protein 3324 67.69 +1 3791560..3793314 - 584 26990069 - PP_3354 - acyl-CoA dehydrogenase, ferrulic acid biotransformation protein, putative 3325 68.01 +1 3793329..3794519 - 396 26990070 - PP_3355 - beta-ketothiolase 3326 66.05 +1 3794567..3796336 - 589 26990071 fcs PP_3356 - feruloyl-CoA synthase 3327 67.49 +1 3796542..3797990 - 482 26990072 vdh PP_3357 - vanillin dehydrogenase 3328 61.97 0 3798066..3798896 - 276 26990073 ech PP_3358 - p-hydroxycinnamoyl CoA hydratase/lyase 3329 59.87 0 3799094..3799564 + 156 26990074 - PP_3359 - hydroxycinnamic acid degradation regulator, putative 3330 62.76 0 3799663..3800787 + 374 26990075 - PP_3360 - hypothetical protein 3331 62.01 0 3800866..3803913 - 1015 26990076 - PP_3361 - hypothetical protein 3332 60.77 0 3804057..3804497 + 146 26990077 - PP_3362 - AsnC family transcriptional regulator 3333 59.55 0 3804538..3805155 - 205 26990078 - PP_3363 - hypothetical protein 3334 62.93 0 3805382..3807925 + 847 26990079 - PP_3364 - response regulator 3335 62.71 0 3808052..3809695 - 547 26990080 - PP_3365 - acetolactate synthase 3336 62.47 0 3809881..3810762 + 293 26990081 - PP_3366 - LysR family transcriptional regulator 3337 63.48 0 3810747..3811406 - 219 26990082 - PP_3367 - hypothetical protein 3338 64.73 0 3811674..3812858 + 394 26990083 - PP_3368 - major facilitator family transporter 3339 64.44 0 3812921..3813772 + 283 26990084 - PP_3369 - LysR family transcriptional regulator 3340 62.55 0 3813869..3814864 + 331 26990085 - PP_3370 - aldo/keto reductase family oxidoreductase 3341 66.35 +1 3814857..3816116 - 419 26990086 - PP_3371 - integral membrane sensor signal transduction histidine kinase 3342 65.10 0 3816116..3816817 - 233 26990087 cpxR PP_3372 - winged helix family two component transcriptional regulator 3343 61.17 0 3817015..3819378 + 787 26990088 - PP_3373 - surface antigen family protein 3344 62.24 0 3819509..3819892 + 127 26990089 - PP_3374 - hypothetical protein 3345 62.22 0 3819907..3820872 + 321 26990090 endA-2 PP_3375 - deoxyribonuclease I 3346 64.80 0 3820915..3821877 - 320 26990091 kguD PP_3376 - 2-ketogluconate 6-phosphate reductase 3347 63.19 0 3821888..3823180 - 430 26990092 - PP_3377 - major facilitator transporter 3348 66.88 +1 3823236..3824186 - 316 26990093 kguK PP_3378 - PfkB domain protein 3349 65.77 0 3824179..3824958 - 259 26990094 - PP_3379 - xylose isomerase domain protein TIM barrel 3350 65.00 0 3825023..3826042 - 339 26990095 ptxS PP_3380 - transcriptional regulator PtxS 3351 55.38 -1 3826645..3827973 - 442 26990096 - PP_3381 - ISPpu9, transposase 3352 64.11 0 3828332..3829585 - 417 26990097 - PP_3382 - gluconate 2-dehydrogenase acceptor subunit 3353 62.07 0 3829592..3831376 - 594 26990098 - PP_3383 - gluconate 2-dehydrogenase acceptor subunit 3354 62.89 0 3831380..3832120 - 246 26990099 - PP_3384 - gluconate 2-dehydrogenase acceptor subunit 3355 60.07 0 3832471..3833319 + 282 26990100 - PP_3385 - hypothetical protein 3356 61.52 0 3833333..3835510 + 725 26990101 vgrG-2 PP_3386 - vgrG protein 3357 62.55 0 3835441..3836388 + 315 26990102 - PP_3387 - hypothetical protein 3358 60.38 0 3836403..3839075 + 890 26990103 - PP_3388 - hypothetical protein 3359 56.99 -1 3839075..3840232 + 385 26990104 - PP_3389 - hypothetical protein 3360 60.89 0 3840235..3841515 - 426 26990105 - PP_3390 - porin, putative 3361 61.20 0 3841565..3842881 - 438 26990106 - PP_3391 - tartrate MFS transporter, putative 3362 61.14 0 3842949..3843473 - 174 26990107 - PP_3392 - anhydrase family 3 protein 3363 62.89 0 3843486..3844676 - 396 26990108 - PP_3393 - CAIB/BAIF family protein 3364 64.84 0 3844701..3845630 - 309 26990109 - PP_3394 - 3-hydroxy-3-methylglutaryl-CoA lyase, putative 3365 62.42 0 3845728..3846693 - 321 26990110 - PP_3395 - LysR family transcriptional regulator 3366 64.56 0 3846908..3848236 + 442 26990111 - PP_3396 - hypothetical protein 3367 63.67 0 3848233..3850500 + 755 26990112 - PP_3397 - hypothetical protein 3368 63.08 0 3850516..3850989 + 157 26990113 - PP_3398 - curlin associated repeat protein 3369 68.36 +1 3852610..3853257 + 215 26990114 alkB PP_3400 - 2OG-Fe(II) oxygenase 3370 62.15 0 3853427..3853714 + 95 26990115 - PP_3401 - hypothetical protein 3371 60.61 0 3853796..3854191 - 131 26990116 - PP_3402 - hypothetical protein 3372 64.30 0 3854312..3855199 - 295 26990117 - PP_3403 - Pirin domain protein 3373 63.12 0 3855296..3856168 - 290 26990118 - PP_3404 - alpha/beta hydrolase fold 3374 61.27 0 3856190..3856819 - 209 26990119 - PP_3405 - lysine exporter protein LysE/YggA 3375 63.33 0 3856944..3857423 + 159 26990120 - PP_3406 - acetyltransferase 3376 62.77 0 3857420..3857650 + 76 26990121 - PP_3407 - hypothetical protein 3377 66.15 +1 3858740..3859129 + 129 26990122 - PP_3409 - cobalamin biosynthesis protein cobE, putative 3378 64.94 0 3859164..3859916 + 250 26990123 cobM PP_3410 - precorrin-4 C11-methyltransferase 3379 63.79 0 3859983..3860225 + 80 26990124 - PP_3411 - hypothetical protein 3380 60.33 0 3860447..3861061 + 204 26990125 - PP_3412 - LuxR family DNA-binding response regulator 3381 62.31 0 3861075..3864356 + 1093 26990126 - PP_3413 - Hpt sensor hybrid histidine kinase 3382 61.97 0 3864322..3865641 - 439 26990127 - PP_3414 - methyl-accepting chemotaxis transducer/sensory box protein 3383 64.80 0 3865855..3866874 - 339 26990128 - PP_3415 - LacI family transcription regulator 3384 65.93 +1 3867081..3867620 + 179 26990129 gnuK PP_3416 - carbohydrate kinase, thermoresistant glucokinase family 3385 61.94 0 3867732..3869084 + 450 26990130 gntP PP_3417 - gluconate transporter 3386 64.12 0 3869081..3869473 + 130 26990131 - PP_3418 - hypothetical protein 3387 61.48 0 3869488..3870915 - 475 26990132 - PP_3419 - two component, sigma54 specific, transcriptional regulator, Fis family 3388 61.71 0 3870884..3872377 - 497 26990133 - PP_3420 - sensor histidine kinase 3389 61.09 0 3872685..3874136 - 483 26990134 - PP_3421 - sensor histidine kinase 3390 63.30 0 3874311..3874904 - 197 26990135 ltg PP_3422 - lytic transglycosylase 3391 64.51 0 3875006..3875515 + 169 26990136 xcpT-2 PP_3423 - general secretion pathway protein G 3392 66.83 +1 3875506..3876717 + 403 26990137 xcpS-2 PP_3424 - type II secretion system protein 3393 66.59 +1 3876909..3878150 + 413 26990138 mexE PP_3425 - efflux transporter, RND family, MFP subunit 3394 62.96 0 3878163..3881342 + 1059 26990139 mexF PP_3426 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3395 67.16 +1 3881339..3882754 + 471 26990140 oprN PP_3427 - RND efflux system, outer membrane lipoprotein, NodT family 3396 66.00 +1 3882835..3884034 + 399 26990141 - PP_3428 - TPR domain-containing protein 3397 62.83 0 3884113..3885729 + 538 26990142 - PP_3429 - histidine kinase 3398 61.57 0 3885736..3887853 - 705 26990143 - PP_3430 - PAS/PAC sensor hybrid histidine kinase 3399 57.06 -1 3887993..3888679 + 228 26990144 - PP_3431 - ThiJ/PfpI domain protein 3400 57.62 -1 3888809..3889615 + 268 26990145 - PP_3432 - hypothetical protein 3401 58.50 0 3889639..3890715 - 358 26990146 hpd PP_3433 - 4-hydroxyphenylpyruvate dioxygenase 3402 54.63 -1 3890742..3890849 - 35 26990147 - PP_3434 - hypothetical protein 3403 63.64 0 3891014..3892600 + 528 26990148 - PP_3435 - diguanylate phosphodiesterase 3404 62.16 0 3892634..3893521 + 295 26990149 rarD-2 PP_3436 - RarD protein, DMT superfamily transporter 3405 63.10 0 3893484..3895055 - 523 26990150 - PP_3437 - CBS domain-containing protein 3406 63.92 0 3895347..3895928 + 193 26990151 - PP_3438 - lysine exporter protein LysE/YggA 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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