version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3227 59.94 0 3688978..3689631 + 217 26989972 - PP_3254 - nucleosidase, putative 3228 60.83 0 3689717..3690538 + 273 26989973 - PP_3255 - hypothetical protein 3229 66.97 +1 3690560..3691219 - 219 26989974 - PP_3256 - glycosyl transferase, group 2 family protein 3230 63.00 0 3691216..3691815 - 199 26989975 - PP_3257 - methyltransferase, putative 3231 67.86 +1 3691827..3692582 - 251 26989976 - PP_3258 - LmbE family protein 3232 64.56 0 3692579..3693622 - 347 26989977 - PP_3259 - acyl-CoA dehydrogenase-related protein 3233 62.63 0 3693663..3696164 - 833 26989978 ligD PP_3260 - ATP-dependent DNA ligase 3234 67.41 +1 3696355..3696756 + 133 26989979 - PP_3261 - hypothetical protein 3235 62.67 0 3696753..3696977 + 74 26989980 - PP_3262 - metallothionein, putative 3236 62.37 0 3697514..3698467 - 317 26989981 - PP_3263 - hypothetical protein 3237 61.35 0 3698467..3699669 - 400 26989982 - PP_3264 - cardiolipin synthase 2 3238 64.34 0 3699666..3700439 - 257 26989983 - PP_3265 - endonuclease/exonuclease/phosphatase 3239 61.16 0 3700436..3701488 - 350 26989984 - PP_3266 - hypothetical protein 3240 57.12 -1 3701568..3702164 + 198 26989985 - PP_3267 - Clp protease, putative 3241 60.90 0 3702166..3702564 - 132 26989986 - PP_3268 - MutT/nudix family protein 3242 62.79 0 3702752..3703009 + 85 26989987 - PP_3269 - hypothetical protein 3243 65.16 0 3703944..3705998 - 684 26989988 phaL PP_3270 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 3244 63.48 0 3706036..3707289 - 417 26989989 phaK PP_3271 - outer membrane porin 3245 61.93 0 3707308..3708870 - 520 26989990 actP PP_3272 - acetate permease 3246 62.78 0 3708867..3709175 - 102 26989991 - PP_3273 - hypothetical protein 3247 63.60 0 3709317..3710393 - 358 26989992 phaI PP_3274 - phenylacetate-CoA oxygenase/reductase, PaaK subunit 3248 67.60 +1 3710409..3710942 - 177 26989993 phaH PP_3275 - phenylacetate-CoA oxygenase, PaaJ subunit 3249 65.88 +1 3710929..3711687 - 252 26989994 - PP_3276 - phenylacetate-CoA oxygenase, PaaI subunit 3250 62.41 0 3711696..3711977 - 93 26989995 - PP_3277 - phenylacetate-CoA oxygenase subunit PaaB 3251 62.02 0 3712003..3712992 - 329 26989996 phaF PP_3278 - phenylacetate-CoA oxygenase subunit PaaA 3252 61.36 0 3713191..3714510 - 439 26989997 phaE PP_3279 - phenylacetate-CoA ligase 3253 66.75 +1 3714632..3715852 - 406 26989998 phaD PP_3280 - beta-ketoadipyl CoA thiolase 3254 66.44 +1 3715845..3716285 - 146 26989999 - PP_3281 - phenylacetic acid degradation protein PaaD 3255 65.81 0 3716278..3717795 - 505 26990000 paaC PP_3282 - 3-hydroxybutyryl-CoA dehydrogenase 3256 65.78 0 3717798..3718589 - 263 26990001 phaB PP_3283 - enoyl-CoA hydratase 3257 65.63 0 3718624..3719397 - 257 26990002 - PP_3284 - enoyl-CoA hydratase-isomerase 3258 66.33 +1 3719744..3720343 + 199 26990003 phaM PP_3285 - phenylacetic acid degradation protein PaaY 3259 59.85 0 3720421..3721344 + 307 26990004 phaN PP_3286 - PaaX family transcriptional regulator 3260 60.65 0 3721403..3722200 - 265 26990005 - PP_3287 - Crp/FNR family transcriptional regulator 3261 59.01 0 3722741..3723667 + 308 26990006 - PP_3288 - universal stress protein 3262 60.11 0 3723697..3724245 - 182 26990007 - PP_3289 - acetyltransferase 3263 62.24 0 3724428..3725354 + 308 26990008 - PP_3290 - universal stress protein 3264 62.94 0 3725345..3726712 + 455 26990009 - PP_3291 - metallo-beta-lactamase family protein 3265 62.79 0 3726785..3727429 + 214 26990010 - PP_3292 - hypothetical protein 3266 57.04 -1 3727489..3727914 - 141 26990011 - PP_3293 - hypothetical protein 3267 61.05 0 3728127..3729017 + 296 26990012 - PP_3294 - universal stress protein 3268 57.71 -1 3729028..3729507 + 159 26990013 - PP_3295 - YeeE/YedE family protein 3269 60.21 0 3729464..3729943 + 159 26990014 - PP_3296 - YeeE/YedE family protein 3270 53.30 -2 3730172..3730702 + 176 26990015 - PP_3297 - hypothetical protein 3271 59.72 0 3731100..3731603 + 167 26990016 - PP_3298 - CinA domain-containing protein 3272 58.40 0 3731774..3733237 - 487 26990017 - PP_3299 - outer membrane lipoprotein 3273 54.80 -1 3733309..3733923 + 204 26990018 - PP_3300 - TetR family transcriptional regulator 3274 61.14 0 3734001..3735104 + 367 26990019 - PP_3301 - RND efflux membrane fusion protein 3275 59.26 0 3735101..3738193 + 1030 26990020 - PP_3302 - RND efflux transporter 3276 62.95 0 3738266..3739558 + 430 161378128 - PP_3303 - 3-oxoacyl-(acyl carrier protein) synthase II 3277 58.11 0 3739555..3740793 + 412 26990022 - PP_3304 - Bcr/CflA family multidrug resistance transporter 3278 49.70 -2 3740946..3741929 - 327 26990023 - PP_3305 - TerC family membrane protein 3279 63.29 0 3742342..3742548 - 68 26990024 - PP_3306 - hypothetical protein 3280 59.06 0 3742698..3743078 + 126 26990025 - PP_3307 - hypothetical protein 3281 62.88 0 3743190..3743717 + 175 26990026 - PP_3308 - oxidoreductase, small subunit, putative 3282 62.48 0 3743714..3744715 + 333 26990027 - PP_3309 - oxidoreductase, molybdopterin-binding subunit 3283 63.46 0 3744712..3746928 + 738 26990028 - PP_3310 - oxidoreductase, large subunit, putative 3284 61.28 0 3747012..3748757 - 581 26990029 - PP_3311 - glutathione-regulated potassium-proton antiporter 3285 62.82 0 3748952..3749341 - 129 26990030 - PP_3312 - heat shock protein, putative 3286 58.87 0 3749482..3749853 - 123 26990031 - PP_3313 - heat shock protein, putative 3287 61.62 0 3749881..3750336 - 151 26990032 - PP_3314 - HSP20 family protein 3288 57.96 0 3750526..3750996 - 156 26990033 - PP_3315 - hypothetical protein 3289 63.87 0 3751057..3753879 - 940 26990034 - PP_3316 - chaperone-associated ATPase, putative 3290 55.56 -1 3753933..3754058 - 41 26990035 - PP_3317 - hypothetical protein 3291 61.32 0 3754045..3754287 - 80 26990036 - PP_3318 - hypothetical protein 3292 55.63 -1 3754557..3756758 + 733 26990037 - PP_3319 - sensory box protein 3293 57.14 -1 3756944..3757111 - 55 26990038 - PP_3320 - hypothetical protein 3294 57.70 -1 3757176..3757688 + 170 26990039 - PP_3321 - hypothetical protein 3295 64.07 0 3757685..3758686 + 333 26990040 hemB-2 PP_3322 - delta-aminolevulinic acid dehydratase 3296 60.78 0 3758733..3759344 + 203 26990041 - PP_3323 - CobW/P47K family protein 3297 63.49 0 3759365..3760339 + 324 26990042 - PP_3324 - putative GTP cyclohydrolase 3298 63.51 0 3760650..3762740 + 696 26990043 - PP_3325 - outer membrane ferric siderophore receptor, putative 3299 62.52 0 3762755..3763477 + 240 26990044 - PP_3326 - hypothetical protein 3300 50.48 -2 3765152..3765565 - 137 26990045 - PP_3328 - ring-cleaving dioxygenase, putative 3301 58.60 0 3766565..3767854 + 429 26990046 - PP_3329 - hypothetical protein 3302 62.87 0 3768411..3770597 + 728 26990047 - PP_3330 - TonB-dependent siderophore receptor 3303 67.40 +1 3770585..3772078 + 497 26990048 - PP_3331 - hypothetical protein 3304 60.48 0 3772385..3772675 + 96 26990049 - PP_3332 - cytochrome c-type protein 3305 63.35 0 3774368..3774970 - 200 26990050 - PP_3335 - hypothetical protein 3306 65.56 0 3775021..3775473 - 150 26990051 - PP_3336 - hypothetical protein 3307 63.64 0 3775577..3775972 - 131 26990052 - PP_3337 - hypothetical protein 3308 62.22 0 3776046..3776315 + 89 26990053 - PP_3338 - ubiquinol oxidase subunit II-related protein 3309 62.25 0 3776458..3776865 + 135 26990054 - PP_3339 - hypothetical protein 3310 61.70 0 3776944..3778995 + 683 26990055 - PP_3340 - TonB-dependent receptor, putative 3311 65.23 0 3779043..3779459 - 138 26990056 - PP_3341 - nickel responsive regulator 3312 65.33 0 3779547..3781121 + 524 26990057 nikA PP_3342 - nickel ABC transporter, periplasmic nickel-binding protein 3313 65.39 0 3781123..3782064 + 313 26990058 nikB PP_3343 - nickel transporter permease NikB 3314 66.90 +1 3782061..3782906 + 281 26990059 nikC PP_3344 - nickel transporter permease NikC 3315 64.33 0 3782907..3783677 + 256 26990060 nikD PP_3345 - nickel transporter ATP-binding protein 3316 66.79 +1 3783674..3784495 + 273 26990061 nikE PP_3346 - nickel transporter ATP-binding protein 3317 60.00 0 3784670..3784804 - 44 26990062 - PP_3347 - hypothetical protein 3318 61.87 0 3784803..3785948 + 381 26990063 - PP_3348 - GGDEF domain-containing protein 3319 66.26 +1 3785964..3787205 - 413 26990064 - PP_3349 - putative 3-hydroxyphenylpropionic transporter MhpT 3320 63.86 0 3787240..3788631 - 463 26990065 - PP_3350 - hypothetical protein 3321 50.00 -2 3788702..3788809 - 35 26990066 - PP_3351 - hypothetical protein 3322 64.98 0 3788893..3790557 + 554 26990067 - PP_3352 - arylsulfatase, putative 3323 66.78 +1 3790704..3791579 + 291 26990068 - PP_3353 - hypothetical protein 3324 67.69 +1 3791560..3793314 - 584 26990069 - PP_3354 - acyl-CoA dehydrogenase, ferrulic acid biotransformation protein, putative 3325 68.01 +1 3793329..3794519 - 396 26990070 - PP_3355 - beta-ketothiolase 3326 66.05 +1 3794567..3796336 - 589 26990071 fcs PP_3356 - feruloyl-CoA synthase 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.