version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3195 66.56 +1 3657296..3658246 - 316 26989940 - PP_3222 - ABC transporter, permease protein 3196 64.69 0 3658243..3659862 - 539 26989941 - PP_3223 - ABC transporter, periplasmic binding protein 3197 63.02 0 3659937..3660731 - 264 26989942 - PP_3224 - hypothetical protein 3198 67.51 +1 3660747..3661691 - 314 26989943 - PP_3225 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 3199 68.50 +1 3661688..3662830 - 380 26989944 - PP_3226 - acyl-CoA dehydrogenase-related protein 3200 63.97 0 3663016..3663906 - 296 26989945 - PP_3227 - LysR family transcriptional regulator 3201 67.49 +1 3664108..3665073 + 321 26989946 - PP_3228 - periplasmic aliphatic sulfonate-binding protein, putative 3202 65.31 0 3665090..3666046 + 318 26989947 - PP_3229 - periplasmic aliphatic sulfonate-binding protein, putative 3203 65.22 0 3666362..3667054 + 230 26989948 - PP_3230 - phosphoribosyl transferase domain-containing protein 3204 61.77 0 3667316..3668683 - 455 26989949 - PP_3231 - hypothetical protein 3205 62.11 0 3668743..3669312 - 189 26989950 - PP_3232 - acetyltransferase 3206 62.16 0 3669704..3670435 + 243 26989951 - PP_3233 - Crp/FNR family transcriptional regulator 3207 59.34 0 3671193..3671888 + 231 26989952 - PP_3234 - HSP20 family protein 3208 61.83 0 3671947..3672339 + 130 26989953 - PP_3235 - hypothetical protein 3209 64.29 0 3672538..3672789 + 83 26989954 - PP_3236 - lipoprotein OprI, putative 3210 63.75 0 3672950..3673840 + 296 26989955 - PP_3237 - universal stress protein 3211 63.00 0 3673980..3674552 - 190 26989956 - PP_3238 - transcriptional regulator PyrR, putative 3212 63.02 0 3674784..3675770 + 328 26989957 - PP_3239 - Tn4652, cointegrate resolution protein T, putative 3213 59.39 0 3675826..3675990 + 54 26989958 - PP_3240 - hypothetical protein 3214 56.69 -1 3676342..3676842 - 166 26989959 - PP_3241 - hypothetical protein 3215 63.42 0 3676995..3678563 + 522 26989960 - PP_3242 - GGDEF domain-containing protein 3216 63.14 0 3678606..3679115 - 169 26989961 - PP_3243 - acetyltransferase 3217 64.71 0 3679133..3679846 - 237 26989962 mgtC PP_3244 - magnesium transporter MgtC family protein 3218 61.29 0 3679953..3680231 - 92 26989963 - PP_3245 - hypothetical protein 3219 62.82 0 3680244..3680711 + 155 26989964 crtZ PP_3246 - beta-carotene hydroxylase 3220 61.86 0 3680755..3681648 - 297 26989965 - PP_3247 - bile acid/Na+ symporter family protein 3221 66.32 +1 3681833..3682696 + 287 26989966 - PP_3248 - Dyp-type peroxidase family 3222 63.37 0 3682879..3683697 + 272 26989967 - PP_3249 - aldo/keto reductase 3223 64.17 0 3683702..3684985 + 427 26989968 - PP_3250 - major facilitator transporter 3224 62.54 0 3685590..3686921 + 443 26989969 - PP_3251 - hypothetical protein 3225 63.62 0 3686924..3687874 + 316 26989970 - PP_3252 - HemK family modification methylase 3226 63.87 0 3687881..3688987 + 368 26989971 - PP_3253 - carboxylate-amine ligase 3227 59.94 0 3688978..3689631 + 217 26989972 - PP_3254 - nucleosidase, putative 3228 60.83 0 3689717..3690538 + 273 26989973 - PP_3255 - hypothetical protein 3229 66.97 +1 3690560..3691219 - 219 26989974 - PP_3256 - glycosyl transferase, group 2 family protein 3230 63.00 0 3691216..3691815 - 199 26989975 - PP_3257 - methyltransferase, putative 3231 67.86 +1 3691827..3692582 - 251 26989976 - PP_3258 - LmbE family protein 3232 64.56 0 3692579..3693622 - 347 26989977 - PP_3259 - acyl-CoA dehydrogenase-related protein 3233 62.63 0 3693663..3696164 - 833 26989978 ligD PP_3260 - ATP-dependent DNA ligase 3234 67.41 +1 3696355..3696756 + 133 26989979 - PP_3261 - hypothetical protein 3235 62.67 0 3696753..3696977 + 74 26989980 - PP_3262 - metallothionein, putative 3236 62.37 0 3697514..3698467 - 317 26989981 - PP_3263 - hypothetical protein 3237 61.35 0 3698467..3699669 - 400 26989982 - PP_3264 - cardiolipin synthase 2 3238 64.34 0 3699666..3700439 - 257 26989983 - PP_3265 - endonuclease/exonuclease/phosphatase 3239 61.16 0 3700436..3701488 - 350 26989984 - PP_3266 - hypothetical protein 3240 57.12 -1 3701568..3702164 + 198 26989985 - PP_3267 - Clp protease, putative 3241 60.90 0 3702166..3702564 - 132 26989986 - PP_3268 - MutT/nudix family protein 3242 62.79 0 3702752..3703009 + 85 26989987 - PP_3269 - hypothetical protein 3243 65.16 0 3703944..3705998 - 684 26989988 phaL PP_3270 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 3244 63.48 0 3706036..3707289 - 417 26989989 phaK PP_3271 - outer membrane porin 3245 61.93 0 3707308..3708870 - 520 26989990 actP PP_3272 - acetate permease 3246 62.78 0 3708867..3709175 - 102 26989991 - PP_3273 - hypothetical protein 3247 63.60 0 3709317..3710393 - 358 26989992 phaI PP_3274 - phenylacetate-CoA oxygenase/reductase, PaaK subunit 3248 67.60 +1 3710409..3710942 - 177 26989993 phaH PP_3275 - phenylacetate-CoA oxygenase, PaaJ subunit 3249 65.88 +1 3710929..3711687 - 252 26989994 - PP_3276 - phenylacetate-CoA oxygenase, PaaI subunit 3250 62.41 0 3711696..3711977 - 93 26989995 - PP_3277 - phenylacetate-CoA oxygenase subunit PaaB 3251 62.02 0 3712003..3712992 - 329 26989996 phaF PP_3278 - phenylacetate-CoA oxygenase subunit PaaA 3252 61.36 0 3713191..3714510 - 439 26989997 phaE PP_3279 - phenylacetate-CoA ligase 3253 66.75 +1 3714632..3715852 - 406 26989998 phaD PP_3280 - beta-ketoadipyl CoA thiolase 3254 66.44 +1 3715845..3716285 - 146 26989999 - PP_3281 - phenylacetic acid degradation protein PaaD 3255 65.81 0 3716278..3717795 - 505 26990000 paaC PP_3282 - 3-hydroxybutyryl-CoA dehydrogenase 3256 65.78 0 3717798..3718589 - 263 26990001 phaB PP_3283 - enoyl-CoA hydratase 3257 65.63 0 3718624..3719397 - 257 26990002 - PP_3284 - enoyl-CoA hydratase-isomerase 3258 66.33 +1 3719744..3720343 + 199 26990003 phaM PP_3285 - phenylacetic acid degradation protein PaaY 3259 59.85 0 3720421..3721344 + 307 26990004 phaN PP_3286 - PaaX family transcriptional regulator 3260 60.65 0 3721403..3722200 - 265 26990005 - PP_3287 - Crp/FNR family transcriptional regulator 3261 59.01 0 3722741..3723667 + 308 26990006 - PP_3288 - universal stress protein 3262 60.11 0 3723697..3724245 - 182 26990007 - PP_3289 - acetyltransferase 3263 62.24 0 3724428..3725354 + 308 26990008 - PP_3290 - universal stress protein 3264 62.94 0 3725345..3726712 + 455 26990009 - PP_3291 - metallo-beta-lactamase family protein 3265 62.79 0 3726785..3727429 + 214 26990010 - PP_3292 - hypothetical protein 3266 57.04 -1 3727489..3727914 - 141 26990011 - PP_3293 - hypothetical protein 3267 61.05 0 3728127..3729017 + 296 26990012 - PP_3294 - universal stress protein 3268 57.71 -1 3729028..3729507 + 159 26990013 - PP_3295 - YeeE/YedE family protein 3269 60.21 0 3729464..3729943 + 159 26990014 - PP_3296 - YeeE/YedE family protein 3270 53.30 -2 3730172..3730702 + 176 26990015 - PP_3297 - hypothetical protein 3271 59.72 0 3731100..3731603 + 167 26990016 - PP_3298 - CinA domain-containing protein 3272 58.40 0 3731774..3733237 - 487 26990017 - PP_3299 - outer membrane lipoprotein 3273 54.80 -1 3733309..3733923 + 204 26990018 - PP_3300 - TetR family transcriptional regulator 3274 61.14 0 3734001..3735104 + 367 26990019 - PP_3301 - RND efflux membrane fusion protein 3275 59.26 0 3735101..3738193 + 1030 26990020 - PP_3302 - RND efflux transporter 3276 62.95 0 3738266..3739558 + 430 161378128 - PP_3303 - 3-oxoacyl-(acyl carrier protein) synthase II 3277 58.11 0 3739555..3740793 + 412 26990022 - PP_3304 - Bcr/CflA family multidrug resistance transporter 3278 49.70 -2 3740946..3741929 - 327 26990023 - PP_3305 - TerC family membrane protein 3279 63.29 0 3742342..3742548 - 68 26990024 - PP_3306 - hypothetical protein 3280 59.06 0 3742698..3743078 + 126 26990025 - PP_3307 - hypothetical protein 3281 62.88 0 3743190..3743717 + 175 26990026 - PP_3308 - oxidoreductase, small subunit, putative 3282 62.48 0 3743714..3744715 + 333 26990027 - PP_3309 - oxidoreductase, molybdopterin-binding subunit 3283 63.46 0 3744712..3746928 + 738 26990028 - PP_3310 - oxidoreductase, large subunit, putative 3284 61.28 0 3747012..3748757 - 581 26990029 - PP_3311 - glutathione-regulated potassium-proton antiporter 3285 62.82 0 3748952..3749341 - 129 26990030 - PP_3312 - heat shock protein, putative 3286 58.87 0 3749482..3749853 - 123 26990031 - PP_3313 - heat shock protein, putative 3287 61.62 0 3749881..3750336 - 151 26990032 - PP_3314 - HSP20 family protein 3288 57.96 0 3750526..3750996 - 156 26990033 - PP_3315 - hypothetical protein 3289 63.87 0 3751057..3753879 - 940 26990034 - PP_3316 - chaperone-associated ATPase, putative 3290 55.56 -1 3753933..3754058 - 41 26990035 - PP_3317 - hypothetical protein 3291 61.32 0 3754045..3754287 - 80 26990036 - PP_3318 - hypothetical protein 3292 55.63 -1 3754557..3756758 + 733 26990037 - PP_3319 - sensory box protein 3293 57.14 -1 3756944..3757111 - 55 26990038 - PP_3320 - hypothetical protein 3294 57.70 -1 3757176..3757688 + 170 26990039 - PP_3321 - hypothetical protein 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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