IslandPathversion 1.0

IslandPath Analysis: Pseudomonas putida KT2440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.83 STD DEV: 4.04
Pseudomonas putida KT2440, complete genome - 1..6181863
5350 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
269	 63.53	0	330109..332406	+	765	26987014	-	PP_0272	-	TonB-dependent siderophore receptor
270	 61.03	0	332472..332684	-	70	26987015	-	PP_0273	-	hypothetical protein
271	 55.56	-1	333189..333728	+	179	26987016	-	PP_0274	-	helix-turn-helix domain-containing protein
272	 54.17	-1	334148..334363	+	71	26987017	-	PP_0275	-	hypothetical protein
273	 52.78	-2	334360..334683	-	107	26987018	-	PP_0276	-	Cro/CI family transcriptional regulator
274	 67.87	+1	335145..335393	-	82	26987019	-	PP_0277	-	hypothetical protein
275	 58.23	0	335914..336150	+	78	26987020	-	PP_0278	-	hypothetical protein
276	 66.42	+1	336543..337748	-	401	26987021	-	PP_0279	-	hypothetical protein
277	 62.75	0	337877..338566	-	229	26987022	-	PP_0280	-	polar amino acid ABC transporter inner membrane subunit
278	 62.19	0	338566..339258	-	230	26987023	-	PP_0281	-	polar amino acid ABC transporter inner membrane subunit
279	 55.51	-1	339313..340065	-	250	26987024	-	PP_0282	-	amino acid ABC transporter, periplasmic amino acid-binding protein
280	 61.24	0	340077..340850	-	257	26987025	-	PP_0283	-	amino acid ABC transporter ATP-binding protein
281	 63.13	0	341482..342867	+	461	26987026	-	PP_0284	-	GABA permease
282	 58.61	0	344264..344536	-	90	26987027	-	PP_0285	-	hypothetical protein
283	 66.76	+1	344533..345600	-	355	26987028	mutY	PP_0286	-	A/G-specific adenine glycosylase
284	 63.77	0	345597..347843	-	748	26987029	-	PP_0287	-	AsmA family protein
285	 63.48	0	348112..349773	+	553	26987030	-	PP_0288	-	major facilitator superfamily MFS_1
286	 58.29	0	349953..350585	+	210	26987031	hisB	PP_0289	-	imidazoleglycerol-phosphate dehydratase
287	 62.91	0	350586..351224	+	212	26987032	hisH	PP_0290	-	imidazole glycerol phosphate synthase subunit HisH
288	 59.77	0	351225..351485	+	86	26987033	-	PP_0291	-	hypothetical protein
289	 63.28	0	351513..352250	+	245	26987034	hisA	PP_0292	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
290	 63.68	0	352261..353031	+	256	26987035	hisF	PP_0293	-	imidazole glycerol phosphate synthase subunit HisF
291	 61.32	0	353149..354327	-	392	26987036	-	PP_0294	-	glycine betaine/L-proline ABC transporter, ATP-binding subunit
292	 60.99	0	354324..355169	-	281	26987037	-	PP_0295	-	glycine betaine/L-proline ABC transporter, permease protein
293	 58.86	0	355254..356201	-	315	26987038	-	PP_0296	-	glycine betaine/L-proline ABC transporter, periplasmic binding protein
294	 63.47	0	356654..358030	+	458	26987039	sda-1	PP_0297	-	L-serine dehydratase, iron-sulfur-dependent, single chain form
295	 62.33	0	358532..359638	+	368	26987040	-	PP_0298	-	AraC family transcriptional regulator
296	 59.04	0	359758..360216	-	152	26987041	-	PP_0299	-	hypothetical protein
297	 49.15	-2	360348..361934	+	528	26987042	-	PP_0300	-	metallopeptidase, putative
298	 59.45	0	362034..362504	-	156	26987043	-	PP_0301	-	hypothetical protein
299	 63.56	0	362515..363480	-	321	26987044	-	PP_0302	-	3-hydroxybutyryl-CoA dehydrogenase
300	 65.76	0	363647..364531	-	294	26987045	-	PP_0303	-	hypothetical protein
301	 63.36	0	364655..365623	-	322	26987046	-	PP_0304	-	hypothetical protein
302	 61.35	0	365732..366691	+	319	26987047	-	PP_0305	-	AraC family transcriptional regulator
303	 56.52	-1	367386..368114	-	242	26987048	-	PP_0306	-	hypothetical protein
304	 59.03	0	368217..368648	-	143	26987049	-	PP_0307	-	hypothetical protein
305	 60.43	0	368919..369896	+	325	26987050	-	PP_0308	-	membrane dipeptidase
306	 58.95	0	369972..370502	+	176	26987051	-	PP_0309	-	hypothetical protein
307	 62.20	0	370518..372578	+	686	26987052	-	PP_0310	-	oxidoreductase, FMN-binding
308	 63.65	0	372757..374709	+	650	26987053	-	PP_0311	-	iron-sulfur cluster-binding protein
309	 66.67	+1	374955..375941	+	328	26987054	-	PP_0312	-	electron transfer flavoprotein, alpha subunit
310	 66.54	+1	375952..376722	+	256	26987055	-	PP_0313	-	electron transfer flavoprotein, beta subunit, putative
311	 57.24	-1	377324..378055	+	243	26987056	-	PP_0314	-	hypothetical protein
312	 60.79	0	378120..379412	-	430	26987057	-	PP_0315	-	Rieske (2Fe-2S) domain protein
313	 61.25	0	379702..380808	+	368	26987058	-	PP_0316	-	oxidoreductase FAD-binding domain protein
314	 63.16	0	380917..382542	-	541	26987059	-	PP_0317	-	methyl-accepting chemotaxis sensory transducer
315	 59.31	0	382809..383039	+	76	26987060	-	PP_0318	-	hypothetical protein
316	 57.76	-1	383036..383338	+	100	26987061	-	PP_0319	-	hypothetical protein
317	 63.78	0	383521..385458	+	645	26987062	-	PP_0320	-	methyl-accepting chemotaxis sensory transducer
318	 62.92	0	385493..386533	-	346	26987063	-	PP_0321	-	threonine aldolase
319	 63.16	0	386859..388112	+	417	26987064	glyA-1	PP_0322	-	serine hydroxymethyltransferase
320	 63.87	0	388128..389378	+	416	26987065	soxB	PP_0323	-	sarcosine oxidase, beta subunit family
321	 59.52	0	389393..389728	+	111	26987066	soxD	PP_0324	-	sarcosine oxidase, delta subunit family
322	 64.05	0	389725..392739	+	1004	26987067	soxA	PP_0325	-	sarcosine oxidase, alpha subunit family
323	 63.19	0	392814..393446	+	210	26987068	soxG	PP_0326	-	sarcosine oxidase, gamma subunit family
324	 59.91	0	393458..394315	+	285	26987069	purU-1	PP_0327	-	formyltetrahydrofolate deformylase
325	 64.00	0	394617..395816	+	399	26987070	fdhA	PP_0328	-	formaldehyde dehydrogenase, glutathione-independent
326	 47.40	-2	396020..396943	-	307	26987071	-	PP_0329	-	hypothetical protein
327	 59.50	0	396918..397712	+	264	26987072	-	PP_0330	-	hypothetical protein
328	 49.47	-2	397733..398482	-	249	26987073	-	PP_0331	-	hypothetical protein
329	 61.26	0	398694..399581	-	295	26987074	-	PP_0332	-	phospholipid/glycerol acyltransferase
330	 60.88	0	399763..400263	+	166	26987075	-	PP_0333	-	hypothetical protein
331	 58.55	0	400413..401471	+	352	26987076	-	PP_0334	-	ISPpu11, transposase
332	 64.74	0	401901..402524	-	207	26987077	-	PP_0335	-	glutathione S-transferase family protein
333	 63.83	0	402528..403196	-	222	26987078	msrA	PP_0336	-	methionine sulfoxide reductase A
334	 63.73	0	403365..406055	-	896	26987079	-	PP_0337	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
335	 65.57	0	406363..408003	-	546	26987080	aceF	PP_0338	-	dihydrolipoamide acetyltransferase
336	 60.92	0	408017..410662	-	881	26987081	aceE	PP_0339	-	pyruvate dehydrogenase subunit E1
337	 64.69	0	411046..413979	+	977	26987082	glnE	PP_0340	-	(glutamate--ammonia-ligase) adenylyltransferase
338	 65.81	0	414182..415231	+	349	26987083	waaF	PP_0341	-	lipopolysaccharide heptosyltransferase II
339	 64.78	0	415232..416290	+	352	26987084	waaC	PP_0342	-	lipopolysaccharide heptosyltransferase I
340	 62.67	0	416290..417414	+	374	26987085	waaG	PP_0343	-	lipopolysaccharide core biosynthesis protein WaaG
341	 64.31	0	417411..418217	+	268	26987086	waaP	PP_0344	-	lipopolysaccharide kinase
342	 62.86	0	418217..418951	+	244	26987087	-	PP_0345	-	lipopolysaccharide kinase
343	 65.74	0	418948..419700	+	250	26987088	-	PP_0346	-	lipopolysaccharide kinase
344	 64.31	0	419700..421142	+	480	26987089	-	PP_0347	-	hypothetical protein
345	 61.25	0	421160..423946	-	928	26987090	-	PP_0348	-	hypothetical protein
346	 63.61	0	424196..425308	-	370	26987091	-	PP_0349	-	PepSY-associated TM helix domain protein
347	 62.06	0	425365..427797	-	810	26987092	-	PP_0350	-	TonB-dependent siderophore receptor
348	 68.23	+1	428049..429005	-	318	26987093	-	PP_0351	-	anti-FecI sigma factor, FecR
349	 65.70	0	429002..429520	-	172	26987094	-	PP_0352	-	RNA polymerase sigma factor
350	 65.68	0	429668..430378	-	236	26987095	-	PP_0353	-	DNA polymerase III, epsilon subunit
351	 64.24	0	430375..432312	-	645	26987096	-	PP_0354	-	CBS domain-containing protein
352	 57.19	-1	432405..432974	+	189	26987097	-	PP_0355	-	response regulator receiver protein
353	 63.13	0	433021..435198	-	725	26987098	glcB	PP_0356	-	malate synthase G
354	 61.66	0	435648..436166	+	172	26987099	-	PP_0357	-	ACT domain-containing protein
355	 63.74	0	436399..437286	-	295	26987100	rarD-1	PP_0358	-	RarD protein, DMT superfamily transporter
356	 65.08	0	437351..438358	-	335	26987101	-	PP_0359	-	serine/threonine protein kinase
357	 66.54	+1	438424..439188	-	254	26987102	modR	PP_0360	-	ModE family transcriptional regulator
358	 62.57	0	439238..439969	-	243	26987103	-	PP_0361	-	competence protein ComF, putative
359	 62.51	0	440059..441117	+	352	26987104	bioB	PP_0362	-	biotin synthase
360	 67.43	+1	441119..442291	+	390	26987105	bioF	PP_0363	-	8-amino-7-oxononanoate synthase
361	 64.07	0	442284..443015	+	243	26987106	bioH	PP_0364	-	carboxylesterase
362	 66.30	+1	443008..443826	+	272	26987107	bioC	PP_0365	-	biotin biosynthesis protein BioC
363	 63.14	0	443837..444517	+	226	26987108	bioD	PP_0366	-	dithiobiotin synthetase
364	 62.50	0	444691..445026	+	111	26987109	-	PP_0367	-	hypothetical protein
365	 62.35	0	445314..447119	+	601	26987110	-	PP_0368	-	acyl-CoA dehydrogenase domain-containing protein
366	 63.76	0	447502..448704	+	400	26987111	-	PP_0369	-	GGDEF domain-containing protein
367	 62.96	0	448829..450607	+	592	26987112	-	PP_0370	-	acyl-CoA dehydrogenase domain-containing protein
368	 62.88	0	450948..451871	-	307	26987113	-	PP_0371	-	LysR family transcriptional regulator
61.83	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.