version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 269 63.53 0 330109..332406 + 765 26987014 - PP_0272 - TonB-dependent siderophore receptor 270 61.03 0 332472..332684 - 70 26987015 - PP_0273 - hypothetical protein 271 55.56 -1 333189..333728 + 179 26987016 - PP_0274 - helix-turn-helix domain-containing protein 272 54.17 -1 334148..334363 + 71 26987017 - PP_0275 - hypothetical protein 273 52.78 -2 334360..334683 - 107 26987018 - PP_0276 - Cro/CI family transcriptional regulator 274 67.87 +1 335145..335393 - 82 26987019 - PP_0277 - hypothetical protein 275 58.23 0 335914..336150 + 78 26987020 - PP_0278 - hypothetical protein 276 66.42 +1 336543..337748 - 401 26987021 - PP_0279 - hypothetical protein 277 62.75 0 337877..338566 - 229 26987022 - PP_0280 - polar amino acid ABC transporter inner membrane subunit 278 62.19 0 338566..339258 - 230 26987023 - PP_0281 - polar amino acid ABC transporter inner membrane subunit 279 55.51 -1 339313..340065 - 250 26987024 - PP_0282 - amino acid ABC transporter, periplasmic amino acid-binding protein 280 61.24 0 340077..340850 - 257 26987025 - PP_0283 - amino acid ABC transporter ATP-binding protein 281 63.13 0 341482..342867 + 461 26987026 - PP_0284 - GABA permease 282 58.61 0 344264..344536 - 90 26987027 - PP_0285 - hypothetical protein 283 66.76 +1 344533..345600 - 355 26987028 mutY PP_0286 - A/G-specific adenine glycosylase 284 63.77 0 345597..347843 - 748 26987029 - PP_0287 - AsmA family protein 285 63.48 0 348112..349773 + 553 26987030 - PP_0288 - major facilitator superfamily MFS_1 286 58.29 0 349953..350585 + 210 26987031 hisB PP_0289 - imidazoleglycerol-phosphate dehydratase 287 62.91 0 350586..351224 + 212 26987032 hisH PP_0290 - imidazole glycerol phosphate synthase subunit HisH 288 59.77 0 351225..351485 + 86 26987033 - PP_0291 - hypothetical protein 289 63.28 0 351513..352250 + 245 26987034 hisA PP_0292 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 290 63.68 0 352261..353031 + 256 26987035 hisF PP_0293 - imidazole glycerol phosphate synthase subunit HisF 291 61.32 0 353149..354327 - 392 26987036 - PP_0294 - glycine betaine/L-proline ABC transporter, ATP-binding subunit 292 60.99 0 354324..355169 - 281 26987037 - PP_0295 - glycine betaine/L-proline ABC transporter, permease protein 293 58.86 0 355254..356201 - 315 26987038 - PP_0296 - glycine betaine/L-proline ABC transporter, periplasmic binding protein 294 63.47 0 356654..358030 + 458 26987039 sda-1 PP_0297 - L-serine dehydratase, iron-sulfur-dependent, single chain form 295 62.33 0 358532..359638 + 368 26987040 - PP_0298 - AraC family transcriptional regulator 296 59.04 0 359758..360216 - 152 26987041 - PP_0299 - hypothetical protein 297 49.15 -2 360348..361934 + 528 26987042 - PP_0300 - metallopeptidase, putative 298 59.45 0 362034..362504 - 156 26987043 - PP_0301 - hypothetical protein 299 63.56 0 362515..363480 - 321 26987044 - PP_0302 - 3-hydroxybutyryl-CoA dehydrogenase 300 65.76 0 363647..364531 - 294 26987045 - PP_0303 - hypothetical protein 301 63.36 0 364655..365623 - 322 26987046 - PP_0304 - hypothetical protein 302 61.35 0 365732..366691 + 319 26987047 - PP_0305 - AraC family transcriptional regulator 303 56.52 -1 367386..368114 - 242 26987048 - PP_0306 - hypothetical protein 304 59.03 0 368217..368648 - 143 26987049 - PP_0307 - hypothetical protein 305 60.43 0 368919..369896 + 325 26987050 - PP_0308 - membrane dipeptidase 306 58.95 0 369972..370502 + 176 26987051 - PP_0309 - hypothetical protein 307 62.20 0 370518..372578 + 686 26987052 - PP_0310 - oxidoreductase, FMN-binding 308 63.65 0 372757..374709 + 650 26987053 - PP_0311 - iron-sulfur cluster-binding protein 309 66.67 +1 374955..375941 + 328 26987054 - PP_0312 - electron transfer flavoprotein, alpha subunit 310 66.54 +1 375952..376722 + 256 26987055 - PP_0313 - electron transfer flavoprotein, beta subunit, putative 311 57.24 -1 377324..378055 + 243 26987056 - PP_0314 - hypothetical protein 312 60.79 0 378120..379412 - 430 26987057 - PP_0315 - Rieske (2Fe-2S) domain protein 313 61.25 0 379702..380808 + 368 26987058 - PP_0316 - oxidoreductase FAD-binding domain protein 314 63.16 0 380917..382542 - 541 26987059 - PP_0317 - methyl-accepting chemotaxis sensory transducer 315 59.31 0 382809..383039 + 76 26987060 - PP_0318 - hypothetical protein 316 57.76 -1 383036..383338 + 100 26987061 - PP_0319 - hypothetical protein 317 63.78 0 383521..385458 + 645 26987062 - PP_0320 - methyl-accepting chemotaxis sensory transducer 318 62.92 0 385493..386533 - 346 26987063 - PP_0321 - threonine aldolase 319 63.16 0 386859..388112 + 417 26987064 glyA-1 PP_0322 - serine hydroxymethyltransferase 320 63.87 0 388128..389378 + 416 26987065 soxB PP_0323 - sarcosine oxidase, beta subunit family 321 59.52 0 389393..389728 + 111 26987066 soxD PP_0324 - sarcosine oxidase, delta subunit family 322 64.05 0 389725..392739 + 1004 26987067 soxA PP_0325 - sarcosine oxidase, alpha subunit family 323 63.19 0 392814..393446 + 210 26987068 soxG PP_0326 - sarcosine oxidase, gamma subunit family 324 59.91 0 393458..394315 + 285 26987069 purU-1 PP_0327 - formyltetrahydrofolate deformylase 325 64.00 0 394617..395816 + 399 26987070 fdhA PP_0328 - formaldehyde dehydrogenase, glutathione-independent 326 47.40 -2 396020..396943 - 307 26987071 - PP_0329 - hypothetical protein 327 59.50 0 396918..397712 + 264 26987072 - PP_0330 - hypothetical protein 328 49.47 -2 397733..398482 - 249 26987073 - PP_0331 - hypothetical protein 329 61.26 0 398694..399581 - 295 26987074 - PP_0332 - phospholipid/glycerol acyltransferase 330 60.88 0 399763..400263 + 166 26987075 - PP_0333 - hypothetical protein 331 58.55 0 400413..401471 + 352 26987076 - PP_0334 - ISPpu11, transposase 332 64.74 0 401901..402524 - 207 26987077 - PP_0335 - glutathione S-transferase family protein 333 63.83 0 402528..403196 - 222 26987078 msrA PP_0336 - methionine sulfoxide reductase A 334 63.73 0 403365..406055 - 896 26987079 - PP_0337 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 335 65.57 0 406363..408003 - 546 26987080 aceF PP_0338 - dihydrolipoamide acetyltransferase 336 60.92 0 408017..410662 - 881 26987081 aceE PP_0339 - pyruvate dehydrogenase subunit E1 337 64.69 0 411046..413979 + 977 26987082 glnE PP_0340 - (glutamate--ammonia-ligase) adenylyltransferase 338 65.81 0 414182..415231 + 349 26987083 waaF PP_0341 - lipopolysaccharide heptosyltransferase II 339 64.78 0 415232..416290 + 352 26987084 waaC PP_0342 - lipopolysaccharide heptosyltransferase I 340 62.67 0 416290..417414 + 374 26987085 waaG PP_0343 - lipopolysaccharide core biosynthesis protein WaaG 341 64.31 0 417411..418217 + 268 26987086 waaP PP_0344 - lipopolysaccharide kinase 342 62.86 0 418217..418951 + 244 26987087 - PP_0345 - lipopolysaccharide kinase 343 65.74 0 418948..419700 + 250 26987088 - PP_0346 - lipopolysaccharide kinase 344 64.31 0 419700..421142 + 480 26987089 - PP_0347 - hypothetical protein 345 61.25 0 421160..423946 - 928 26987090 - PP_0348 - hypothetical protein 346 63.61 0 424196..425308 - 370 26987091 - PP_0349 - PepSY-associated TM helix domain protein 347 62.06 0 425365..427797 - 810 26987092 - PP_0350 - TonB-dependent siderophore receptor 348 68.23 +1 428049..429005 - 318 26987093 - PP_0351 - anti-FecI sigma factor, FecR 349 65.70 0 429002..429520 - 172 26987094 - PP_0352 - RNA polymerase sigma factor 350 65.68 0 429668..430378 - 236 26987095 - PP_0353 - DNA polymerase III, epsilon subunit 351 64.24 0 430375..432312 - 645 26987096 - PP_0354 - CBS domain-containing protein 352 57.19 -1 432405..432974 + 189 26987097 - PP_0355 - response regulator receiver protein 353 63.13 0 433021..435198 - 725 26987098 glcB PP_0356 - malate synthase G 354 61.66 0 435648..436166 + 172 26987099 - PP_0357 - ACT domain-containing protein 355 63.74 0 436399..437286 - 295 26987100 rarD-1 PP_0358 - RarD protein, DMT superfamily transporter 356 65.08 0 437351..438358 - 335 26987101 - PP_0359 - serine/threonine protein kinase 357 66.54 +1 438424..439188 - 254 26987102 modR PP_0360 - ModE family transcriptional regulator 358 62.57 0 439238..439969 - 243 26987103 - PP_0361 - competence protein ComF, putative 359 62.51 0 440059..441117 + 352 26987104 bioB PP_0362 - biotin synthase 360 67.43 +1 441119..442291 + 390 26987105 bioF PP_0363 - 8-amino-7-oxononanoate synthase 361 64.07 0 442284..443015 + 243 26987106 bioH PP_0364 - carboxylesterase 362 66.30 +1 443008..443826 + 272 26987107 bioC PP_0365 - biotin biosynthesis protein BioC 363 63.14 0 443837..444517 + 226 26987108 bioD PP_0366 - dithiobiotin synthetase 364 62.50 0 444691..445026 + 111 26987109 - PP_0367 - hypothetical protein 365 62.35 0 445314..447119 + 601 26987110 - PP_0368 - acyl-CoA dehydrogenase domain-containing protein 366 63.76 0 447502..448704 + 400 26987111 - PP_0369 - GGDEF domain-containing protein 367 62.96 0 448829..450607 + 592 26987112 - PP_0370 - acyl-CoA dehydrogenase domain-containing protein 368 62.88 0 450948..451871 - 307 26987113 - PP_0371 - LysR family transcriptional regulator 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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