version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3006 61.51 0 3418567..3418857 - 96 26989751 - PP_3032 - DNA-binding protein Roi-related protein 3007 53.83 -1 3419450..3420181 - 243 26989752 - PP_3033 - transcriptional repressor pyocin R2_PP 3008 51.52 -2 3420260..3420523 + 87 26989753 - PP_3034 - regulator protein, putative 3009 54.60 -1 3420434..3420607 - 57 26989754 - PP_3035 - hypothetical protein 3010 60.00 0 3420970..3421149 + 59 26989755 - PP_3036 - hypothetical protein 3011 58.90 0 3421632..3421850 + 72 26989756 - PP_3037 - C4-type zinc finger DksA/TraR family protein 3012 61.15 0 3421840..3424050 + 736 26989757 - PP_3038 - TraC domain-containing protein 3013 56.75 -1 3424047..3424409 + 120 26989758 - PP_3039 - hypothetical protein 3014 62.07 0 3424921..3425268 + 115 26989759 - PP_3040 - pyocin R2_PP, holin 3015 60.46 0 3425433..3426044 + 203 26989760 - PP_3041 - hypothetical protein 3016 60.63 0 3426049..3428085 + 678 26989761 - PP_3042 - terminase, large subunit, putative 3017 63.29 0 3428087..3428293 + 68 26989762 - PP_3043 - hypothetical protein 3018 63.99 0 3428290..3429783 + 497 26989763 - PP_3044 - lambda family phage portal protein 3019 61.08 0 3429780..3430943 + 387 26989764 - PP_3045 - ClpP protease, putative 3020 62.64 0 3430946..3431293 + 115 26989765 - PP_3046 - hypothetical protein 3021 59.64 0 3431355..3432350 + 331 26989766 - PP_3047 - hypothetical protein 3022 61.06 0 3432347..3432667 + 106 26989767 - PP_3048 - hypothetical protein 3023 62.29 0 3432664..3433326 + 220 26989768 - PP_3049 - hypothetical protein 3024 62.52 0 3433319..3433849 + 176 26989769 - PP_3050 - hypothetical protein 3025 63.18 0 3433846..3434448 + 200 26989770 gpV PP_3051 - pyocin R2_PP 3026 64.07 0 3434491..3434760 + 89 26989771 - PP_3052 - hypothetical protein 3027 65.44 0 3434763..3435089 + 108 26989772 gpW PP_3053 - pyocin R2_PP, baseplate protein 3028 65.04 0 3435086..3436066 + 326 26989773 gpJ PP_3054 - pyocin R2_PP, baseplate/tail fiber protein 3029 67.16 +1 3436063..3436875 + 270 26989774 gpI PP_3055 - pyocin R2_PP, tail formation protein 3030 62.80 0 3436872..3437750 + 292 26989775 - PP_3056 - pyocin R2_PP, tail fiber protein, putative 3031 56.28 -1 3437757..3438497 + 246 26989776 - PP_3057 - hypothetical protein 3032 62.34 0 3438520..3438981 + 153 26989777 - PP_3058 - hypothetical protein 3033 64.18 0 3439076..3440242 + 388 26989778 gpFI PP_3059 - pyocin R2_PP, tail sheath protein 3034 59.80 0 3440255..3440764 + 169 26989779 gpFII PP_3060 - pyocin R2_PP, tail tube protein 3035 59.93 0 3440810..3441106 + 98 26989780 - PP_3061 - hypothetical protein 3036 65.75 0 3441239..3444508 + 1089 26989781 - PP_3062 - pyocin R2_PP, tail length determination protein, putative 3037 63.95 0 3444518..3445363 + 281 26989782 gpU PP_3063 - pyocin R2_PP, tail formation protein 3038 62.80 0 3445338..3445544 + 68 26989783 gpX PP_3064 - pyocin R2_PP, tail component protein 3039 63.51 0 3445604..3446647 + 347 26989784 gpD PP_3065 - pyocin R2_PP, tail formation 3040 60.33 0 3446684..3447235 + 183 26989785 - PP_3066 - pyocin R2_PP, lytic enzyme 3041 47.42 -2 3448800..3450077 + 425 26989786 - PP_3067 - hypothetical protein 3042 65.10 0 3450778..3450969 + 63 26989787 - PP_3068 - hypothetical protein 3043 66.02 +1 3450966..3453443 - 825 26989788 - PP_3069 - outer membrane autotransporter 3044 58.33 0 3453556..3453831 - 91 26989789 ppiC-1 PP_3070 - PpiC-type peptidyl-prolyl cis-trans isomerase 3045 64.62 0 3453935..3455887 - 650 26989790 - PP_3071 - acetoacetyl-CoA synthetase 3046 64.17 0 3455980..3456459 - 159 26989791 - PP_3072 - ecotin precursor 3047 63.55 0 3456515..3457285 - 256 26989792 bdhA PP_3073 - 3-hydroxybutyrate dehydrogenase 3048 63.51 0 3457296..3458687 - 463 26989793 - PP_3074 - citrate transporter 3049 65.49 0 3458913..3460358 - 481 26989794 - PP_3075 - sigma-54 dependent transcriptional regulator 3050 63.03 0 3460355..3461371 - 338 26989795 - PP_3076 - binding-protein-dependent transport systems inner membrane component 3051 63.74 0 3461371..3462429 - 352 26989796 - PP_3077 - binding-protein-dependent transport systems inner membrane component 3052 64.49 0 3462426..3464354 - 642 26989797 - PP_3078 - ABC transporter, periplasmic binding protein, putative 3053 62.41 0 3464368..3464649 - 93 26989798 ppiC-2 PP_3079 - PpiC-type peptidyl-prolyl cis-trans isomerase 3054 65.25 0 3464730..3465791 - 353 26989799 aroF-2 PP_3080 - phospho-2-dehydro-3-deoxyheptonate aldolase 3055 66.88 +1 3466346..3466822 - 158 26989800 - PP_3081 - PEBP family protein 3056 65.79 0 3467336..3468700 - 454 26989801 - PP_3082 - major facilitator superfamily MFS_1 3057 63.70 0 3469061..3469936 + 291 26989802 - PP_3083 - auxin efflux carrier 3058 63.74 0 3470069..3472528 - 819 26989803 - PP_3084 - TonB-dependent siderophore receptor 3059 67.60 +1 3472636..3473601 - 321 26989804 - PP_3085 - transmembrane sensor, putative 3060 63.51 0 3473598..3474104 - 168 26989805 - PP_3086 - RNA polymerase sigma-70 factor, putative 3061 65.55 0 3474193..3476709 - 838 26989806 - PP_3087 - excinuclease ABC subunit A 3062 61.33 0 3476877..3477962 - 361 26989807 - PP_3088 - hypothetical protein 3063 58.01 0 3478058..3478600 - 180 26989808 - PP_3089 - hypothetical protein 3064 63.94 0 3478720..3481215 - 831 26989809 - PP_3090 - OmpA domain-containing protein 3065 65.43 0 3482117..3485920 - 1267 26989810 - PP_3091 - hypothetical protein 3066 62.62 0 3485951..3486667 - 238 26989811 - PP_3092 - hypothetical protein 3067 63.32 0 3486664..3488007 - 447 26989812 - PP_3093 - hypothetical protein 3068 64.73 0 3488004..3488726 - 240 26989813 - PP_3094 - hypothetical protein 3069 65.87 +1 3488751..3491387 - 878 26989814 - PP_3095 - chaperone-associated ATPase, putative 3070 64.80 0 3491345..3492415 - 356 26989815 - PP_3096 - hypothetical protein 3071 61.67 0 3492379..3494199 - 606 26989816 - PP_3097 - hypothetical protein 3072 64.18 0 3494199..3494681 - 160 26989817 - PP_3098 - hypothetical protein 3073 63.14 0 3494708..3496210 - 500 26989818 - PP_3099 - hypothetical protein 3074 59.38 0 3496225..3496800 - 191 26989819 - PP_3100 - hypothetical protein 3075 61.30 0 3498998..3499780 + 260 26989820 - PP_3101 - ADP-ribosylglycohydrolase family protein 3076 51.18 -2 3504272..3504568 - 98 26989821 - PP_3102 - hypothetical protein 3077 59.44 0 3504565..3505740 - 391 26989822 - PP_3103 - hypothetical protein 3078 56.15 -1 3506632..3507648 + 338 26989823 - PP_3104 - hypothetical protein 3079 51.01 -2 3507649..3508344 + 231 26989824 - PP_3105 - hypothetical protein 3080 56.70 -1 3508370..3510226 + 618 26989825 - PP_3106 - hypothetical protein 3081 61.69 0 3510802..3511323 + 173 26989826 - PP_3107 - hypothetical protein 3082 60.97 0 3511330..3515487 + 1385 26989827 - PP_3108 - rhs-related protein 3083 52.55 -2 3517881..3518312 + 143 26989828 - PP_3109 - hypothetical protein 3084 55.40 -1 3521804..3522016 + 70 26989829 - PP_3110 - hypothetical protein 3085 64.76 0 3522156..3522260 + 34 26989830 - PP_3111 - hypothetical protein 3086 66.67 +1 3522417..3522845 - 142 26989831 - PP_3112 - hypothetical protein 3087 55.56 -1 3522907..3523266 + 119 26989832 - PP_3113 - ISPpu13, transposase Orf1 3088 58.97 0 3523285..3524817 + 510 26989833 - PP_3114 - ISPpu13, transposase Orf2 3089 53.33 -2 3524832..3525146 + 104 26989834 - PP_3115 - ISPpu13, transposase Orf3 3090 65.19 0 3525552..3526160 + 202 26989835 lexA-2 PP_3116 - LexA repressor 3091 70.53 +2 3526160..3526780 + 206 26989836 - PP_3117 - hypothetical protein 3092 67.37 +1 3526787..3528205 + 472 26989837 - PP_3118 - hypothetical protein 3093 65.66 0 3528202..3531282 + 1026 161378129 dnaE2 PP_3119 - error-prone DNA polymerase 3094 66.14 +1 3531465..3532226 - 253 26989839 - PP_3120 - aldo/keto reductase family oxidoreductase 3095 64.02 0 3532274..3533179 - 301 26989840 - PP_3121 - LysR family transcriptional regulator 3096 60.94 0 3533320..3534018 + 232 26989841 - PP_3122 - 3-oxoacid CoA-transferase subunit A 3097 61.04 0 3534054..3534710 + 218 26989842 - PP_3123 - 3-oxoacid CoA-transferase subunit B 3098 63.71 0 3534865..3536283 + 472 26989843 - PP_3124 - short-chain fatty acid transporter family protein 3099 61.14 0 3536360..3536902 + 180 26989844 - PP_3125 - Cro/CI family transcriptional regulator 3100 58.60 0 3537594..3538151 + 185 26989845 - PP_3126 - polysaccharide export protein 3101 61.53 0 3539311..3540849 + 512 26989846 - PP_3127 - lipopolysaccharide biosynthesis protein 3102 59.48 0 3540885..3541691 + 268 26989847 - PP_3128 - protein-tyrosine kinase 3103 62.53 0 3541754..3542719 - 321 26989848 galE PP_3129 - UDP-glucose 4-epimerase 3104 62.87 0 3542825..3545431 - 868 26989849 - PP_3130 - hypothetical protein 3105 63.06 0 3545431..3546957 - 508 26989850 - PP_3131 - hypothetical protein 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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