version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2953 55.94 -1 3378299..3378727 - 142 26989698 - PP_2979 - hypothetical protein 2954 57.38 -1 3378731..3378967 - 78 26989699 - PP_2980 - hypothetical protein 2955 59.77 0 3379174..3380145 - 323 26989700 - PP_2981 - Tn4652, cointegrate resolution protein S 2956 60.26 0 3380326..3381324 + 332 26989701 - PP_2982 - Tn4652, cointegrate resolution protein T, putative 2957 59.06 0 3381352..3382008 + 218 26989702 - PP_2983 - hypothetical protein 2958 59.58 0 3381989..3382468 + 159 26989703 - PP_2984 - hypothetical protein 2959 54.58 -1 3383517..3384062 - 181 26989704 - PP_2985 - hypothetical protein 2960 59.90 0 3384364..3385413 - 349 26989705 - PP_2986 - oxidoreductase, putative 2961 55.67 -1 3385614..3386177 - 187 26989706 - PP_2987 - hypothetical protein 2962 59.78 0 3386154..3387170 + 338 26989707 - PP_2988 - alcohol dehydrogenase, zinc-containing 2963 62.26 0 3387217..3388011 + 264 26989708 - PP_2989 - short chain dehydrogenase/reductase family oxidoreductase 2964 56.04 -1 3388149..3388628 + 159 26989709 - PP_2990 - MerR family transcriptional regulator 2965 55.62 -1 3388644..3389675 - 343 26989710 - PP_2991 - hypothetical protein 2966 56.57 -1 3389685..3390506 - 273 26989711 - PP_2992 - hypothetical protein 2967 58.87 0 3390574..3390714 + 46 26989712 - PP_2993 - hypothetical protein 2968 59.11 0 3390788..3392044 + 418 26989713 - PP_2994 - NADH:flavin oxidoreductase/NADH oxidase 2969 60.41 0 3392212..3392754 + 180 26989714 - PP_2995 - DNA topology modulation kinase FlaR, putative 2970 56.43 -1 3392817..3393275 - 152 26989715 - PP_2996 - hypothetical protein 2971 65.00 0 3393504..3394403 - 299 26989716 - PP_2997 - LysR family transcriptional regulator 2972 66.98 +1 3394497..3395444 + 315 26989717 - PP_2998 - 2-dehydropantoate 2-reductase, putative 2973 64.66 0 3395441..3395839 + 132 26989718 - PP_2999 - glyoxalase family protein 2974 64.69 0 3395836..3396291 + 151 26989719 - PP_3000 - MaoC domain-containing protein 2975 66.91 +1 3396288..3397520 + 410 26989720 - PP_3001 - CAIB/BAIF family protein 2976 66.67 +1 3397517..3398335 + 272 26989721 aroE-2 PP_3002 - shikimate 5-dehydrogenase 2977 60.73 0 3398340..3398777 + 145 26989722 aroQ-3 PP_3003 - 3-dehydroquinate dehydratase 2978 53.49 -2 3399019..3399276 + 85 26989723 - PP_3004 - hypothetical protein 2979 66.24 +1 3399329..3400030 - 233 26989724 - PP_3005 - hypothetical protein 2980 63.02 0 3400018..3400566 - 182 26989725 - PP_3006 - RNA polymerase sigma factor 2981 63.83 0 3400670..3401197 - 175 26989726 - PP_3007 - hypothetical protein 2982 53.82 -1 3401414..3401701 + 95 26989727 - PP_3008 - hypothetical protein 2983 50.51 -2 3401810..3401908 + 32 26989728 - PP_3009 - hypothetical protein 2984 55.56 -1 3402105..3402473 + 122 26989729 - PP_3010 - hypothetical protein 2985 53.89 -1 3402625..3402984 + 119 26989730 - PP_3011 - hypothetical protein 2986 53.49 -2 3403038..3403166 + 42 26989731 - PP_3012 - hypothetical protein 2987 55.16 -1 3403210..3403461 - 83 26989732 - PP_3013 - hypothetical protein 2988 60.56 0 3403580..3403939 + 119 26989733 - PP_3014 - hypothetical protein 2989 60.29 0 3404307..3404510 + 67 26989734 - PP_3015 - medium chain acyl-CoA ligase 2990 60.67 0 3404647..3405480 + 277 26989735 - PP_3016 - lipopolysaccharide core biosynthesis protein, putative 2991 64.87 0 3405551..3406051 + 166 26989736 ogt PP_3017 - methylated-DNA--protein-cysteine methyltransferase 2992 64.20 0 3406056..3406298 - 80 26989737 - PP_3018 - hypothetical protein 2993 64.92 0 3406295..3407038 - 247 26989738 - PP_3019 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2994 64.88 0 3407253..3407978 + 241 26989739 - PP_3020 - serine/threonine protein phosphatase, putative 2995 65.69 0 3407926..3408540 - 204 26989740 - PP_3021 - amino acid transporter LysE 2996 65.19 0 3408622..3409431 - 269 26989741 - PP_3022 - AraC family transcriptional regulator 2997 63.68 0 3409505..3409939 + 144 26989742 - PP_3023 - amino acid efflux protein, putative 2998 46.87 -2 3409967..3411163 + 398 26989743 - PP_3024 - hypothetical protein 2999 48.63 -2 3412201..3412821 - 206 26989744 - PP_3025 - amino acid transporter LysE 3000 56.77 -1 3412988..3414613 + 541 26989745 - PP_3026 - phage recombinase, putative 3001 59.82 0 3414886..3415104 - 72 26989746 - PP_3027 - hypothetical protein 3002 61.27 0 3415097..3415411 - 104 26989747 - PP_3028 - hypothetical protein 3003 63.83 0 3415408..3417237 - 609 26989748 - PP_3029 - DNA cytosine methyltransferase family protein 3004 58.83 0 3417234..3418037 - 267 26989749 - PP_3030 - hypothetical protein 3005 55.03 -1 3418091..3418408 - 105 26989750 - PP_3031 - pyocin R2_PP, transcriptional activator prtN 3006 61.51 0 3418567..3418857 - 96 26989751 - PP_3032 - DNA-binding protein Roi-related protein 3007 53.83 -1 3419450..3420181 - 243 26989752 - PP_3033 - transcriptional repressor pyocin R2_PP 3008 51.52 -2 3420260..3420523 + 87 26989753 - PP_3034 - regulator protein, putative 3009 54.60 -1 3420434..3420607 - 57 26989754 - PP_3035 - hypothetical protein 3010 60.00 0 3420970..3421149 + 59 26989755 - PP_3036 - hypothetical protein 3011 58.90 0 3421632..3421850 + 72 26989756 - PP_3037 - C4-type zinc finger DksA/TraR family protein 3012 61.15 0 3421840..3424050 + 736 26989757 - PP_3038 - TraC domain-containing protein 3013 56.75 -1 3424047..3424409 + 120 26989758 - PP_3039 - hypothetical protein 3014 62.07 0 3424921..3425268 + 115 26989759 - PP_3040 - pyocin R2_PP, holin 3015 60.46 0 3425433..3426044 + 203 26989760 - PP_3041 - hypothetical protein 3016 60.63 0 3426049..3428085 + 678 26989761 - PP_3042 - terminase, large subunit, putative 3017 63.29 0 3428087..3428293 + 68 26989762 - PP_3043 - hypothetical protein 3018 63.99 0 3428290..3429783 + 497 26989763 - PP_3044 - lambda family phage portal protein 3019 61.08 0 3429780..3430943 + 387 26989764 - PP_3045 - ClpP protease, putative 3020 62.64 0 3430946..3431293 + 115 26989765 - PP_3046 - hypothetical protein 3021 59.64 0 3431355..3432350 + 331 26989766 - PP_3047 - hypothetical protein 3022 61.06 0 3432347..3432667 + 106 26989767 - PP_3048 - hypothetical protein 3023 62.29 0 3432664..3433326 + 220 26989768 - PP_3049 - hypothetical protein 3024 62.52 0 3433319..3433849 + 176 26989769 - PP_3050 - hypothetical protein 3025 63.18 0 3433846..3434448 + 200 26989770 gpV PP_3051 - pyocin R2_PP 3026 64.07 0 3434491..3434760 + 89 26989771 - PP_3052 - hypothetical protein 3027 65.44 0 3434763..3435089 + 108 26989772 gpW PP_3053 - pyocin R2_PP, baseplate protein 3028 65.04 0 3435086..3436066 + 326 26989773 gpJ PP_3054 - pyocin R2_PP, baseplate/tail fiber protein 3029 67.16 +1 3436063..3436875 + 270 26989774 gpI PP_3055 - pyocin R2_PP, tail formation protein 3030 62.80 0 3436872..3437750 + 292 26989775 - PP_3056 - pyocin R2_PP, tail fiber protein, putative 3031 56.28 -1 3437757..3438497 + 246 26989776 - PP_3057 - hypothetical protein 3032 62.34 0 3438520..3438981 + 153 26989777 - PP_3058 - hypothetical protein 3033 64.18 0 3439076..3440242 + 388 26989778 gpFI PP_3059 - pyocin R2_PP, tail sheath protein 3034 59.80 0 3440255..3440764 + 169 26989779 gpFII PP_3060 - pyocin R2_PP, tail tube protein 3035 59.93 0 3440810..3441106 + 98 26989780 - PP_3061 - hypothetical protein 3036 65.75 0 3441239..3444508 + 1089 26989781 - PP_3062 - pyocin R2_PP, tail length determination protein, putative 3037 63.95 0 3444518..3445363 + 281 26989782 gpU PP_3063 - pyocin R2_PP, tail formation protein 3038 62.80 0 3445338..3445544 + 68 26989783 gpX PP_3064 - pyocin R2_PP, tail component protein 3039 63.51 0 3445604..3446647 + 347 26989784 gpD PP_3065 - pyocin R2_PP, tail formation 3040 60.33 0 3446684..3447235 + 183 26989785 - PP_3066 - pyocin R2_PP, lytic enzyme 3041 47.42 -2 3448800..3450077 + 425 26989786 - PP_3067 - hypothetical protein 3042 65.10 0 3450778..3450969 + 63 26989787 - PP_3068 - hypothetical protein 3043 66.02 +1 3450966..3453443 - 825 26989788 - PP_3069 - outer membrane autotransporter 3044 58.33 0 3453556..3453831 - 91 26989789 ppiC-1 PP_3070 - PpiC-type peptidyl-prolyl cis-trans isomerase 3045 64.62 0 3453935..3455887 - 650 26989790 - PP_3071 - acetoacetyl-CoA synthetase 3046 64.17 0 3455980..3456459 - 159 26989791 - PP_3072 - ecotin precursor 3047 63.55 0 3456515..3457285 - 256 26989792 bdhA PP_3073 - 3-hydroxybutyrate dehydrogenase 3048 63.51 0 3457296..3458687 - 463 26989793 - PP_3074 - citrate transporter 3049 65.49 0 3458913..3460358 - 481 26989794 - PP_3075 - sigma-54 dependent transcriptional regulator 3050 63.03 0 3460355..3461371 - 338 26989795 - PP_3076 - binding-protein-dependent transport systems inner membrane component 3051 63.74 0 3461371..3462429 - 352 26989796 - PP_3077 - binding-protein-dependent transport systems inner membrane component 3052 64.49 0 3462426..3464354 - 642 26989797 - PP_3078 - ABC transporter, periplasmic binding protein, putative 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0