version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 246 61.92 0 303246..304151 - 301 26986991 rimK PP_0248 - alpha-L-glutamate ligase, RimK family 247 60.87 0 304148..304768 - 206 26986992 - PP_0249 - hypothetical protein 248 63.93 0 304740..305141 + 133 26986993 hslR PP_0250 - RNA-binding S4 domain protein 249 61.13 0 305170..305964 - 264 26986994 - PP_0251 - hypothetical protein 250 61.22 0 306085..306984 + 299 26986995 hslO PP_0252 - Hsp33-like chaperonin 251 65.08 0 308852..309292 + 146 26986996 - PP_0254 - thioesterase superfamily protein 252 66.46 +1 309349..309831 - 160 26986997 - PP_0255 - 17 kDa surface antigen 253 64.32 0 310028..312373 - 781 26986998 - PP_0256 - molybdopterin oxidoreductase, alpha subunit 254 65.46 0 312379..313209 - 276 26986999 - PP_0257 - formate dehydrogenase family accessory protein FdhD 255 56.46 -1 313385..313825 + 146 26987000 - PP_0258 - hypothetical protein 256 61.24 0 313876..314538 - 220 26987001 - PP_0259 - HAD superfamily hydrolase 257 65.08 0 314603..315169 + 188 26987002 nudE PP_0260 - ADP-ribose diphosphatase NudE 258 64.42 0 315184..315984 + 266 26987003 cysQ PP_0261 - 3'(2'),5'-bisphosphate nucleotidase 259 64.04 0 316067..316522 - 151 26987004 - PP_0262 - hypothetical protein 260 65.60 0 316522..317928 - 468 26987005 - PP_0263 - two component, sigma54 specific, transcriptional regulator, Fis family 261 65.45 0 317925..319739 - 604 26987006 - PP_0264 - sensor histidine kinase 262 59.52 0 319782..320327 - 181 26987007 - PP_0265 - dTDP-4-dehydrorhamnose 3,5-epimerase 263 63.32 0 320605..321711 + 368 26987008 - PP_0266 - agmatine deiminase 264 62.46 0 322169..324238 - 689 26987009 - PP_0267 - TonB-dependent siderophore receptor 265 60.00 0 324713..326032 + 439 26987010 oprQ PP_0268 - outer membrane porin 266 62.89 0 326063..327730 - 555 26987011 - PP_0269 - glutamate synthase, large subunit, putative 267 65.35 0 327880..329247 - 455 26987012 - PP_0270 - integral membrane sensor signal transduction histidine kinase 268 64.17 0 329249..329968 - 239 26987013 gltR-1 PP_0271 - winged helix family two component transcriptional regulator 269 63.53 0 330109..332406 + 765 26987014 - PP_0272 - TonB-dependent siderophore receptor 270 61.03 0 332472..332684 - 70 26987015 - PP_0273 - hypothetical protein 271 55.56 -1 333189..333728 + 179 26987016 - PP_0274 - helix-turn-helix domain-containing protein 272 54.17 -1 334148..334363 + 71 26987017 - PP_0275 - hypothetical protein 273 52.78 -2 334360..334683 - 107 26987018 - PP_0276 - Cro/CI family transcriptional regulator 274 67.87 +1 335145..335393 - 82 26987019 - PP_0277 - hypothetical protein 275 58.23 0 335914..336150 + 78 26987020 - PP_0278 - hypothetical protein 276 66.42 +1 336543..337748 - 401 26987021 - PP_0279 - hypothetical protein 277 62.75 0 337877..338566 - 229 26987022 - PP_0280 - polar amino acid ABC transporter inner membrane subunit 278 62.19 0 338566..339258 - 230 26987023 - PP_0281 - polar amino acid ABC transporter inner membrane subunit 279 55.51 -1 339313..340065 - 250 26987024 - PP_0282 - amino acid ABC transporter, periplasmic amino acid-binding protein 280 61.24 0 340077..340850 - 257 26987025 - PP_0283 - amino acid ABC transporter ATP-binding protein 281 63.13 0 341482..342867 + 461 26987026 - PP_0284 - GABA permease 282 58.61 0 344264..344536 - 90 26987027 - PP_0285 - hypothetical protein 283 66.76 +1 344533..345600 - 355 26987028 mutY PP_0286 - A/G-specific adenine glycosylase 284 63.77 0 345597..347843 - 748 26987029 - PP_0287 - AsmA family protein 285 63.48 0 348112..349773 + 553 26987030 - PP_0288 - major facilitator superfamily MFS_1 286 58.29 0 349953..350585 + 210 26987031 hisB PP_0289 - imidazoleglycerol-phosphate dehydratase 287 62.91 0 350586..351224 + 212 26987032 hisH PP_0290 - imidazole glycerol phosphate synthase subunit HisH 288 59.77 0 351225..351485 + 86 26987033 - PP_0291 - hypothetical protein 289 63.28 0 351513..352250 + 245 26987034 hisA PP_0292 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 290 63.68 0 352261..353031 + 256 26987035 hisF PP_0293 - imidazole glycerol phosphate synthase subunit HisF 291 61.32 0 353149..354327 - 392 26987036 - PP_0294 - glycine betaine/L-proline ABC transporter, ATP-binding subunit 292 60.99 0 354324..355169 - 281 26987037 - PP_0295 - glycine betaine/L-proline ABC transporter, permease protein 293 58.86 0 355254..356201 - 315 26987038 - PP_0296 - glycine betaine/L-proline ABC transporter, periplasmic binding protein 294 63.47 0 356654..358030 + 458 26987039 sda-1 PP_0297 - L-serine dehydratase, iron-sulfur-dependent, single chain form 295 62.33 0 358532..359638 + 368 26987040 - PP_0298 - AraC family transcriptional regulator 296 59.04 0 359758..360216 - 152 26987041 - PP_0299 - hypothetical protein 297 49.15 -2 360348..361934 + 528 26987042 - PP_0300 - metallopeptidase, putative 298 59.45 0 362034..362504 - 156 26987043 - PP_0301 - hypothetical protein 299 63.56 0 362515..363480 - 321 26987044 - PP_0302 - 3-hydroxybutyryl-CoA dehydrogenase 300 65.76 0 363647..364531 - 294 26987045 - PP_0303 - hypothetical protein 301 63.36 0 364655..365623 - 322 26987046 - PP_0304 - hypothetical protein 302 61.35 0 365732..366691 + 319 26987047 - PP_0305 - AraC family transcriptional regulator 303 56.52 -1 367386..368114 - 242 26987048 - PP_0306 - hypothetical protein 304 59.03 0 368217..368648 - 143 26987049 - PP_0307 - hypothetical protein 305 60.43 0 368919..369896 + 325 26987050 - PP_0308 - membrane dipeptidase 306 58.95 0 369972..370502 + 176 26987051 - PP_0309 - hypothetical protein 307 62.20 0 370518..372578 + 686 26987052 - PP_0310 - oxidoreductase, FMN-binding 308 63.65 0 372757..374709 + 650 26987053 - PP_0311 - iron-sulfur cluster-binding protein 309 66.67 +1 374955..375941 + 328 26987054 - PP_0312 - electron transfer flavoprotein, alpha subunit 310 66.54 +1 375952..376722 + 256 26987055 - PP_0313 - electron transfer flavoprotein, beta subunit, putative 311 57.24 -1 377324..378055 + 243 26987056 - PP_0314 - hypothetical protein 312 60.79 0 378120..379412 - 430 26987057 - PP_0315 - Rieske (2Fe-2S) domain protein 313 61.25 0 379702..380808 + 368 26987058 - PP_0316 - oxidoreductase FAD-binding domain protein 314 63.16 0 380917..382542 - 541 26987059 - PP_0317 - methyl-accepting chemotaxis sensory transducer 315 59.31 0 382809..383039 + 76 26987060 - PP_0318 - hypothetical protein 316 57.76 -1 383036..383338 + 100 26987061 - PP_0319 - hypothetical protein 317 63.78 0 383521..385458 + 645 26987062 - PP_0320 - methyl-accepting chemotaxis sensory transducer 318 62.92 0 385493..386533 - 346 26987063 - PP_0321 - threonine aldolase 319 63.16 0 386859..388112 + 417 26987064 glyA-1 PP_0322 - serine hydroxymethyltransferase 320 63.87 0 388128..389378 + 416 26987065 soxB PP_0323 - sarcosine oxidase, beta subunit family 321 59.52 0 389393..389728 + 111 26987066 soxD PP_0324 - sarcosine oxidase, delta subunit family 322 64.05 0 389725..392739 + 1004 26987067 soxA PP_0325 - sarcosine oxidase, alpha subunit family 323 63.19 0 392814..393446 + 210 26987068 soxG PP_0326 - sarcosine oxidase, gamma subunit family 324 59.91 0 393458..394315 + 285 26987069 purU-1 PP_0327 - formyltetrahydrofolate deformylase 325 64.00 0 394617..395816 + 399 26987070 fdhA PP_0328 - formaldehyde dehydrogenase, glutathione-independent 326 47.40 -2 396020..396943 - 307 26987071 - PP_0329 - hypothetical protein 327 59.50 0 396918..397712 + 264 26987072 - PP_0330 - hypothetical protein 328 49.47 -2 397733..398482 - 249 26987073 - PP_0331 - hypothetical protein 329 61.26 0 398694..399581 - 295 26987074 - PP_0332 - phospholipid/glycerol acyltransferase 330 60.88 0 399763..400263 + 166 26987075 - PP_0333 - hypothetical protein 331 58.55 0 400413..401471 + 352 26987076 - PP_0334 - ISPpu11, transposase 332 64.74 0 401901..402524 - 207 26987077 - PP_0335 - glutathione S-transferase family protein 333 63.83 0 402528..403196 - 222 26987078 msrA PP_0336 - methionine sulfoxide reductase A 334 63.73 0 403365..406055 - 896 26987079 - PP_0337 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 335 65.57 0 406363..408003 - 546 26987080 aceF PP_0338 - dihydrolipoamide acetyltransferase 336 60.92 0 408017..410662 - 881 26987081 aceE PP_0339 - pyruvate dehydrogenase subunit E1 337 64.69 0 411046..413979 + 977 26987082 glnE PP_0340 - (glutamate--ammonia-ligase) adenylyltransferase 338 65.81 0 414182..415231 + 349 26987083 waaF PP_0341 - lipopolysaccharide heptosyltransferase II 339 64.78 0 415232..416290 + 352 26987084 waaC PP_0342 - lipopolysaccharide heptosyltransferase I 340 62.67 0 416290..417414 + 374 26987085 waaG PP_0343 - lipopolysaccharide core biosynthesis protein WaaG 341 64.31 0 417411..418217 + 268 26987086 waaP PP_0344 - lipopolysaccharide kinase 342 62.86 0 418217..418951 + 244 26987087 - PP_0345 - lipopolysaccharide kinase 343 65.74 0 418948..419700 + 250 26987088 - PP_0346 - lipopolysaccharide kinase 344 64.31 0 419700..421142 + 480 26987089 - PP_0347 - hypothetical protein 345 61.25 0 421160..423946 - 928 26987090 - PP_0348 - hypothetical protein 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0