version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2813 64.48 0 3241921..3244209 + 762 26989558 - PP_2839 - DEAD_2 domain protein 2814 65.48 0 3244310..3245491 - 393 26989559 - PP_2840 - NnrS family protein 2815 64.16 0 3245743..3246621 + 292 26989560 - PP_2841 - phage integrase family site specific recombinase 2816 66.31 +1 3246899..3247732 + 277 26989561 ureD PP_2842 - urease accessory protein UreD 2817 64.03 0 3247742..3248044 + 100 26989562 ureA PP_2843 - urease subunit gamma 2818 65.09 0 3248064..3248381 + 105 26989563 ureB PP_2844 - urease subunit beta 2819 65.20 0 3248378..3250081 + 567 26989564 ureC PP_2845 - urease subunit alpha 2820 65.87 +1 3250091..3250594 + 167 26989565 ureE PP_2846 - urease accessory protein UreE 2821 65.93 +1 3250613..3251158 + 181 26989566 ureJ PP_2847 - HupE/UreJ protein 2822 68.00 +1 3251158..3251832 + 224 26989567 ureF PP_2848 - urease accessory protein UreF 2823 62.50 0 3251844..3252467 + 207 26989568 ureG PP_2849 - urease accessory protein UreG 2824 65.79 0 3252514..3252627 + 37 26989569 - PP_2850 - hypothetical protein 2825 61.32 0 3252710..3253438 - 242 26989570 - PP_2851 - hypothetical protein 2826 64.08 0 3253533..3255734 - 733 26989571 - PP_2852 - sulfatase domain-containing protein 2827 59.56 0 3255870..3257150 - 426 26989572 - PP_2853 - hypothetical protein 2828 59.76 0 3257197..3257949 - 250 26989573 - PP_2854 - hypothetical protein 2829 60.50 0 3257995..3258675 - 226 26989574 - PP_2855 - hypothetical protein 2830 58.68 0 3258737..3260188 - 483 26989575 - PP_2856 - hypothetical protein 2831 61.66 0 3260238..3260816 - 192 26989576 - PP_2857 - hypothetical protein 2832 60.50 0 3260818..3261255 - 145 26989577 - PP_2858 - hypothetical protein 2833 60.00 0 3261553..3262122 - 189 26989578 - PP_2859 - hypothetical protein 2834 64.55 0 3262119..3262685 - 188 26989579 - PP_2860 - nicotinamide mononucleotide transporter 2835 63.85 0 3262909..3264543 - 544 26989580 - PP_2861 - methyl-accepting chemotaxis sensory transducer 2836 59.83 0 3264841..3265674 + 277 26989581 uppP PP_2862 - undecaprenyl pyrophosphate phosphatase 2837 63.23 0 3265703..3266080 + 125 26989582 - PP_2863 - hypothetical protein 2838 63.44 0 3266139..3266510 - 123 26989583 - PP_2864 - hypothetical protein 2839 64.01 0 3266491..3267393 - 300 26989584 - PP_2865 - LysR family transcriptional regulator 2840 63.07 0 3267527..3268138 + 203 26989585 acpD PP_2866 - azoreductase 2841 64.75 0 3268207..3269409 - 400 26989586 - PP_2867 - pyridine nucleotide-disulphide oxidoreductase family protein 2842 65.00 0 3269490..3270089 - 199 26989587 - PP_2868 - Cro/CI family transcriptional regulator 2843 66.00 +1 3270129..3272081 - 650 26989588 - PP_2869 - NADH:flavin oxidoreductase/NADH oxidase 2844 62.22 0 3272199..3273299 + 366 26989589 - PP_2870 - PotD/PotF family extracellular solute-binding protein, 2845 61.77 0 3273322..3274077 + 251 26989590 - PP_2871 - hypothetical protein 2846 61.67 0 3274144..3275124 + 326 26989591 - PP_2872 - hypothetical protein 2847 60.12 0 3275195..3275515 + 106 26989592 - PP_2873 - hypothetical protein 2848 67.31 +1 3275984..3276295 + 103 26989593 - PP_2874 - hypothetical protein 2849 58.12 0 3276342..3276692 - 116 26989594 - PP_2875 - hypothetical protein 2850 64.57 0 3276975..3278117 - 380 26989595 ampC PP_2876 - beta-lactamase 2851 60.78 0 3278224..3279225 + 333 26989596 - PP_2877 - bile acid/Na+ symporter family protein 2852 58.47 0 3279248..3279430 + 60 26989597 - PP_2878 - hypothetical protein 2853 64.14 0 3279483..3280076 - 197 26989598 - PP_2879 - hypothetical protein 2854 65.25 0 3280063..3280626 - 187 26989599 - PP_2880 - TetR family transcriptional regulator 2855 62.57 0 3280716..3281447 + 243 26989600 - PP_2881 - short chain dehydrogenase/reductase family oxidoreductase 2856 63.25 0 3281476..3282090 + 204 26989601 - PP_2882 - DSBA oxidoreductase 2857 66.33 +1 3282063..3282362 - 99 26989602 - PP_2883 - hypothetical protein 2858 62.64 0 3282365..3282910 - 181 26989603 - PP_2884 - XRE family transcriptional regulator 2859 68.13 +1 3282992..3284221 - 409 26989604 - PP_2885 - major facilitator transporter 2860 65.92 +1 3284279..3284812 - 177 26989605 - PP_2886 - cytochrome B561 2861 66.95 +1 3284809..3285861 - 350 26989606 - PP_2887 - catalase domain protein 2862 65.90 +1 3285986..3286507 + 173 26989607 - PP_2888 - RNA polymerase, sigma-24 subunit, ECF subfamily 2863 67.60 +1 3286504..3287256 + 250 26989608 - PP_2889 - putative transmembrane anti-sigma factor 2864 62.73 0 3287297..3288109 - 270 26989609 xthA PP_2890 - exonuclease III 2865 63.13 0 3288245..3288922 + 225 26989610 - PP_2891 - acetyltransferase 2866 62.04 0 3288966..3290717 + 583 26989611 - PP_2892 - surface antigen (D15) 2867 65.17 0 3290714..3294388 + 1224 26989612 - PP_2893 - hypothetical protein 2868 62.34 0 3294408..3294962 - 184 26989613 - PP_2894 - hypothetical protein 2869 56.90 -1 3295038..3295682 - 214 26989614 - PP_2895 - hypothetical protein 2870 62.47 0 3295748..3296128 - 126 26989615 - PP_2896 - hypothetical protein 2871 63.94 0 3296149..3296808 + 219 26989616 - PP_2897 - hypothetical protein 2872 65.45 0 3296380..3296871 - 163 26989617 - PP_2898 - hypothetical protein 2873 58.20 0 3296990..3297178 + 62 26989618 - PP_2899 - hypothetical protein 2874 61.87 0 3297215..3297589 - 124 26989619 - PP_2900 - hypothetical protein 2875 65.11 0 3297781..3300099 + 772 26989620 - PP_2901 - penicillin amidase family protein 2876 61.83 0 3300181..3300903 - 240 26989621 - PP_2902 - UDP-2,3-diacylglucosamine hydrolase 2877 56.89 -1 3300900..3301400 - 166 26989622 ppiB PP_2903 - peptidyl-prolyl cis-trans isomerase B 2878 63.73 0 3301649..3303352 + 567 26989623 glnS PP_2904 - glutaminyl-tRNA synthetase 2879 63.27 0 3303362..3304744 + 460 26989624 cysS PP_2905 - cysteinyl-tRNA synthetase 2880 62.43 0 3304776..3306167 - 463 26989625 - PP_2906 - integral membrane sensor signal transduction histidine kinase 2881 63.44 0 3306145..3306825 - 226 26989626 - PP_2907 - winged helix family two component transcriptional regulator 2882 62.64 0 3306900..3307595 - 231 26989627 - PP_2908 - DNA-binding transcriptional regulator CsiR 2883 61.04 0 3307791..3308768 + 325 26989628 - PP_2909 - hypothetical protein 2884 62.99 0 3308883..3310133 + 416 26989629 - PP_2910 - hypothetical protein 2885 62.00 0 3310284..3311675 + 463 26989630 - PP_2911 - GABA permease 2886 63.31 0 3311763..3312656 + 297 26989631 - PP_2912 - hypothetical protein 2887 62.97 0 3312818..3313792 + 324 26989632 hemB-1 PP_2913 - delta-aminolevulinic acid dehydratase 2888 60.75 0 3313951..3315453 + 500 26989633 proP PP_2914 - proline/glycine betaine transporter 2889 68.23 +1 3315454..3316155 - 233 26989634 - PP_2915 - hypothetical protein 2890 60.95 0 3316165..3316794 - 209 26989635 ribE-2 PP_2916 - riboflavin synthase subunit alpha 2891 63.83 0 3316834..3316974 - 46 26989636 - PP_2917 - hypothetical protein 2892 64.49 0 3316967..3319033 - 688 26989637 - PP_2918 - trehalose synthase 2893 65.58 0 3319225..3320142 - 305 26989638 - PP_2919 - LysR family transcriptional regulator 2894 64.43 0 3320263..3321021 + 252 26989639 - PP_2920 - hypothetical protein 2895 63.16 0 3321060..3322001 + 313 26989640 - PP_2921 - allophanate hydrolase subunit 1 2896 66.56 +1 3321998..3322969 + 323 26989641 - PP_2922 - urea amidolyase related protein 2897 66.78 +1 3323032..3323889 - 285 26989642 - PP_2923 - hypothetical protein 2898 66.03 +1 3323880..3325130 - 416 26989643 - PP_2924 - radical SAM domain protein 2899 61.30 0 3325245..3326864 + 539 26989644 mqo-3 PP_2925 - malate:quinone oxidoreductase 2900 63.43 0 3326874..3328202 - 442 26989645 - PP_2926 - UDP-glucose dehydrogenase, putative 2901 65.33 0 3328447..3329493 + 348 26989646 - PP_2927 - hypothetical protein 2902 58.96 0 3329624..3330868 - 414 26989647 - PP_2928 - saccharopine dehydrogenase 2903 59.56 0 3330901..3331998 - 365 26989648 nspC PP_2929 - carboxynorspermidine decarboxylase 2904 66.01 +1 3332184..3333101 - 305 26989649 - PP_2930 - L-serine dehydratase, putative 2905 63.76 0 3333098..3333922 - 274 26989650 - PP_2931 - YheO domain protein 2906 67.02 +1 3333855..3335558 - 567 26989651 - PP_2932 - amidase 2907 62.87 0 3335750..3336592 - 280 26989652 - PP_2933 - putative glutathione S-transferase YghU 2908 66.48 +1 3336794..3337840 + 348 26989653 - PP_2934 - hypothetical protein 2909 66.16 +1 3337802..3338995 - 397 26989654 - PP_2935 - hypothetical protein 2910 60.87 0 3339238..3340824 - 528 26989655 - PP_2936 - ABC transporter ATP-binding protein 2911 58.81 0 3340857..3341276 - 139 26989656 - PP_2937 - integrase, putative 2912 53.28 -2 3341452..3342138 - 228 26989657 - PP_2938 - OsmC family protein 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0