IslandPath Analysis: Pseudomonas putida KT2440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.83   STD DEV: 4.04
Pseudomonas putida KT2440, complete genome - 1..6181863
5350 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2785	 61.75	0	3204694..3206340	+	548	26989530	-	PP_2811	-	hypothetical protein
2786	 62.28	0	3206349..3208763	+	804	26989531	-	PP_2812	-	transporter, putative
2787	 65.11	0	3208774..3209736	+	320	26989532	-	PP_2813	-	BNR domain-containing protein
2788	 60.57	0	3209853..3210722	-	289	26989533	-	PP_2814	-	hypothetical protein
2789	 65.07	0	3210961..3212214	+	417	26989534	-	PP_2815	-	hypothetical protein
2790	 62.43	0	3212273..3212839	-	188	26989535	-	PP_2816	-	transcriptional regulator NfxB, putative
2791	 68.95	+1	3212931..3214067	+	378	26989536	mexC	PP_2817	-	multidrug efflux RND membrane fusion protein MexC
2792	 65.26	0	3214083..3217211	+	1042	26989537	mexD	PP_2818	-	multidrug efflux RND transporter MexD
2793	 68.30	+1	3217208..3218614	+	468	26989538	oprJ	PP_2819	-	outer membrane protein OprJ
2794	 65.05	0	3218697..3219254	-	185	26989539	nfxB	PP_2820	-	transcriptional regulator NfxB
2795	 61.98	0	3219432..3219836	-	134	26989540	-	PP_2821	-	hypothetical protein
2796	 62.75	0	3219827..3221053	+	408	26989541	-	PP_2822	-	hypothetical protein
2797	 63.40	0	3221038..3222690	-	550	26989542	-	PP_2823	-	methyl-accepting chemotaxis transducer
2798	 60.94	0	3223250..3223930	-	226	26989543	-	PP_2824	-	TetR family transcriptional regulator
2799	 60.68	0	3224000..3224467	-	155	26989544	-	PP_2825	-	integrase, putative
2800	 65.03	0	3224501..3225415	-	304	26989545	mexT	PP_2826	-	transcriptional regulator MexT
2801	 63.54	0	3225622..3226644	+	340	26989546	-	PP_2827	-	alcohol dehydrogenase, zinc-containing
2802	 64.36	0	3227159..3228544	+	461	26989547	-	PP_2828	-	hypothetical protein
2803	 63.06	0	3228541..3229899	+	452	26989548	-	PP_2829	-	GntR family transcriptional regulator
2804	 63.71	0	3230027..3231379	-	450	26989549	-	PP_2830	-	major facilitator family transporter
2805	 64.08	0	3231395..3232630	-	411	26989550	-	PP_2831	-	mandelate racemase/muconate lactonizing enzyme family protein
2806	 63.82	0	3232810..3233757	+	315	26989551	-	PP_2832	-	LysR family transcriptional regulator
2807	 63.48	0	3233785..3234756	+	323	26989552	-	PP_2833	-	LysR family transcriptional regulator
2808	 65.63	0	3234903..3236444	+	513	26989553	-	PP_2834	-	UxaA family hydrolase
2809	 65.99	+1	3236504..3237538	+	344	26989554	-	PP_2835	-	Ldh family oxidoreductase
2810	 65.85	0	3237559..3238776	+	405	26989555	-	PP_2836	-	fumarylacetoacetate hydrolase family protein
2811	 62.09	0	3238867..3240177	+	436	26989556	-	PP_2837	-	major facilitator family transporter
2812	 65.33	0	3240302..3241951	+	549	26989557	-	PP_2838	-	VRR-NUC domain protein
2813	 64.48	0	3241921..3244209	+	762	26989558	-	PP_2839	-	DEAD_2 domain protein
2814	 65.48	0	3244310..3245491	-	393	26989559	-	PP_2840	-	NnrS family protein
2815	 64.16	0	3245743..3246621	+	292	26989560	-	PP_2841	-	phage integrase family site specific recombinase
2816	 66.31	+1	3246899..3247732	+	277	26989561	ureD	PP_2842	-	urease accessory protein UreD
2817	 64.03	0	3247742..3248044	+	100	26989562	ureA	PP_2843	-	urease subunit gamma
2818	 65.09	0	3248064..3248381	+	105	26989563	ureB	PP_2844	-	urease subunit beta
2819	 65.20	0	3248378..3250081	+	567	26989564	ureC	PP_2845	-	urease subunit alpha
2820	 65.87	+1	3250091..3250594	+	167	26989565	ureE	PP_2846	-	urease accessory protein UreE
2821	 65.93	+1	3250613..3251158	+	181	26989566	ureJ	PP_2847	-	HupE/UreJ protein
2822	 68.00	+1	3251158..3251832	+	224	26989567	ureF	PP_2848	-	urease accessory protein UreF
2823	 62.50	0	3251844..3252467	+	207	26989568	ureG	PP_2849	-	urease accessory protein UreG
2824	 65.79	0	3252514..3252627	+	37	26989569	-	PP_2850	-	hypothetical protein
2825	 61.32	0	3252710..3253438	-	242	26989570	-	PP_2851	-	hypothetical protein
2826	 64.08	0	3253533..3255734	-	733	26989571	-	PP_2852	-	sulfatase domain-containing protein
2827	 59.56	0	3255870..3257150	-	426	26989572	-	PP_2853	-	hypothetical protein
2828	 59.76	0	3257197..3257949	-	250	26989573	-	PP_2854	-	hypothetical protein
2829	 60.50	0	3257995..3258675	-	226	26989574	-	PP_2855	-	hypothetical protein
2830	 58.68	0	3258737..3260188	-	483	26989575	-	PP_2856	-	hypothetical protein
2831	 61.66	0	3260238..3260816	-	192	26989576	-	PP_2857	-	hypothetical protein
2832	 60.50	0	3260818..3261255	-	145	26989577	-	PP_2858	-	hypothetical protein
2833	 60.00	0	3261553..3262122	-	189	26989578	-	PP_2859	-	hypothetical protein
2834	 64.55	0	3262119..3262685	-	188	26989579	-	PP_2860	-	nicotinamide mononucleotide transporter
2835	 63.85	0	3262909..3264543	-	544	26989580	-	PP_2861	-	methyl-accepting chemotaxis sensory transducer
2836	 59.83	0	3264841..3265674	+	277	26989581	uppP	PP_2862	-	undecaprenyl pyrophosphate phosphatase
2837	 63.23	0	3265703..3266080	+	125	26989582	-	PP_2863	-	hypothetical protein
2838	 63.44	0	3266139..3266510	-	123	26989583	-	PP_2864	-	hypothetical protein
2839	 64.01	0	3266491..3267393	-	300	26989584	-	PP_2865	-	LysR family transcriptional regulator
2840	 63.07	0	3267527..3268138	+	203	26989585	acpD	PP_2866	-	azoreductase
2841	 64.75	0	3268207..3269409	-	400	26989586	-	PP_2867	-	pyridine nucleotide-disulphide oxidoreductase family protein
2842	 65.00	0	3269490..3270089	-	199	26989587	-	PP_2868	-	Cro/CI family transcriptional regulator
2843	 66.00	+1	3270129..3272081	-	650	26989588	-	PP_2869	-	NADH:flavin oxidoreductase/NADH oxidase
2844	 62.22	0	3272199..3273299	+	366	26989589	-	PP_2870	-	PotD/PotF family extracellular solute-binding protein,
2845	 61.77	0	3273322..3274077	+	251	26989590	-	PP_2871	-	hypothetical protein
2846	 61.67	0	3274144..3275124	+	326	26989591	-	PP_2872	-	hypothetical protein
2847	 60.12	0	3275195..3275515	+	106	26989592	-	PP_2873	-	hypothetical protein
2848	 67.31	+1	3275984..3276295	+	103	26989593	-	PP_2874	-	hypothetical protein
2849	 58.12	0	3276342..3276692	-	116	26989594	-	PP_2875	-	hypothetical protein
2850	 64.57	0	3276975..3278117	-	380	26989595	ampC	PP_2876	-	beta-lactamase
2851	 60.78	0	3278224..3279225	+	333	26989596	-	PP_2877	-	bile acid/Na+ symporter family protein
2852	 58.47	0	3279248..3279430	+	60	26989597	-	PP_2878	-	hypothetical protein
2853	 64.14	0	3279483..3280076	-	197	26989598	-	PP_2879	-	hypothetical protein
2854	 65.25	0	3280063..3280626	-	187	26989599	-	PP_2880	-	TetR family transcriptional regulator
2855	 62.57	0	3280716..3281447	+	243	26989600	-	PP_2881	-	short chain dehydrogenase/reductase family oxidoreductase
2856	 63.25	0	3281476..3282090	+	204	26989601	-	PP_2882	-	DSBA oxidoreductase
2857	 66.33	+1	3282063..3282362	-	99	26989602	-	PP_2883	-	hypothetical protein
2858	 62.64	0	3282365..3282910	-	181	26989603	-	PP_2884	-	XRE family transcriptional regulator
2859	 68.13	+1	3282992..3284221	-	409	26989604	-	PP_2885	-	major facilitator transporter
2860	 65.92	+1	3284279..3284812	-	177	26989605	-	PP_2886	-	cytochrome B561
2861	 66.95	+1	3284809..3285861	-	350	26989606	-	PP_2887	-	catalase domain protein
2862	 65.90	+1	3285986..3286507	+	173	26989607	-	PP_2888	-	RNA polymerase, sigma-24 subunit, ECF subfamily
2863	 67.60	+1	3286504..3287256	+	250	26989608	-	PP_2889	-	putative transmembrane anti-sigma factor
2864	 62.73	0	3287297..3288109	-	270	26989609	xthA	PP_2890	-	exonuclease III
2865	 63.13	0	3288245..3288922	+	225	26989610	-	PP_2891	-	acetyltransferase
2866	 62.04	0	3288966..3290717	+	583	26989611	-	PP_2892	-	surface antigen (D15)
2867	 65.17	0	3290714..3294388	+	1224	26989612	-	PP_2893	-	hypothetical protein
2868	 62.34	0	3294408..3294962	-	184	26989613	-	PP_2894	-	hypothetical protein
2869	 56.90	-1	3295038..3295682	-	214	26989614	-	PP_2895	-	hypothetical protein
2870	 62.47	0	3295748..3296128	-	126	26989615	-	PP_2896	-	hypothetical protein
2871	 63.94	0	3296149..3296808	+	219	26989616	-	PP_2897	-	hypothetical protein
2872	 65.45	0	3296380..3296871	-	163	26989617	-	PP_2898	-	hypothetical protein
2873	 58.20	0	3296990..3297178	+	62	26989618	-	PP_2899	-	hypothetical protein
2874	 61.87	0	3297215..3297589	-	124	26989619	-	PP_2900	-	hypothetical protein
2875	 65.11	0	3297781..3300099	+	772	26989620	-	PP_2901	-	penicillin amidase family protein
2876	 61.83	0	3300181..3300903	-	240	26989621	-	PP_2902	-	UDP-2,3-diacylglucosamine hydrolase
2877	 56.89	-1	3300900..3301400	-	166	26989622	ppiB	PP_2903	-	peptidyl-prolyl cis-trans isomerase B
2878	 63.73	0	3301649..3303352	+	567	26989623	glnS	PP_2904	-	glutaminyl-tRNA synthetase
2879	 63.27	0	3303362..3304744	+	460	26989624	cysS	PP_2905	-	cysteinyl-tRNA synthetase
2880	 62.43	0	3304776..3306167	-	463	26989625	-	PP_2906	-	integral membrane sensor signal transduction histidine kinase
2881	 63.44	0	3306145..3306825	-	226	26989626	-	PP_2907	-	winged helix family two component transcriptional regulator
2882	 62.64	0	3306900..3307595	-	231	26989627	-	PP_2908	-	DNA-binding transcriptional regulator CsiR
2883	 61.04	0	3307791..3308768	+	325	26989628	-	PP_2909	-	hypothetical protein
2884	 62.99	0	3308883..3310133	+	416	26989629	-	PP_2910	-	hypothetical protein
61.83	MEAN

4.04	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.