version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2732 64.53 0 3142049..3143077 + 342 26989477 - PP_2758 - ribose ABC transporter, periplasmic ribose-binding protein, putative 2733 67.45 +1 3143074..3144612 + 512 26989478 - PP_2759 - ribose ABC transporter, ATP-binding protein, putative 2734 64.95 0 3144527..3145573 + 348 26989479 - PP_2760 - ribose transport permease protein, putative 2735 62.92 0 3145575..3146561 + 328 26989480 - PP_2761 - ribose ABC transporter, permease protein, putative 2736 65.13 0 3146627..3147865 - 412 26989481 - PP_2762 - hypothetical protein 2737 55.13 -1 3147847..3148002 + 51 26989482 - PP_2763 - hypothetical protein 2738 64.88 0 3148204..3148764 + 186 26989483 msuE PP_2764 - NADH-dependent FMN reductase MsuE 2739 62.00 0 3148791..3149882 + 363 26989484 - PP_2765 - luciferase family protein 2740 70.73 +2 3149894..3151024 + 376 26989485 - PP_2766 - long-chain-fatty-acid--CoA ligase-related protein 2741 64.15 0 3151034..3151867 + 277 26989486 - PP_2767 - branched-chain amino acid ABC transporter, ATP-binding protein, putative 2742 66.89 +1 3151843..3152724 + 293 26989487 - PP_2768 - branched-chain amino acid ABC transporter, permease protein, putative 2743 63.54 0 3152737..3153726 + 329 26989488 - PP_2769 - branched-chain amino acid ABC transporter, permease protein, putative 2744 62.90 0 3153794..3155119 + 441 26989489 - PP_2770 - hypothetical protein 2745 65.04 0 3155156..3156259 - 367 26989490 - PP_2771 - sigma-54 dependent transcriptional regulator 2746 64.98 0 3156268..3157455 - 395 26989491 - PP_2772 - monooxygenase, putative 2747 58.49 0 3157511..3157669 - 52 26989492 - PP_2773 - hypothetical protein 2748 63.09 0 3157979..3160075 + 698 26989493 - PP_2774 - glycine betaine/L-proline ABC transporter, ATPase/permease fusion protein, putative 2749 59.02 0 3160006..3161130 + 374 26989494 - PP_2775 - glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative 2750 64.39 0 3161127..3162050 + 307 26989495 - PP_2776 - homocysteine S-methyltransferase family protein 2751 60.35 0 3162630..3163199 + 189 26989496 - PP_2777 - acyl carrier protein, putative 2752 61.74 0 3163208..3164485 + 425 26989497 - PP_2778 - 3-oxoacyl-(acyl-carrier-protein) synthase II 2753 62.60 0 3164487..3165569 + 360 26989498 - PP_2779 - beta-ketoacyl synthase, putative 2754 64.74 0 3165566..3166864 + 432 26989499 - PP_2780 - 3-oxoacyl-(acyl-carrier-protein) synthase II 2755 64.95 0 3166735..3168072 + 445 26989500 - PP_2781 - beta-ketoacyl synthase 2756 60.59 0 3168103..3170982 + 959 26989501 - PP_2782 - pyridoxalphosphate dependent aminotransferase, class III 2757 61.79 0 3170992..3171729 + 245 26989502 - PP_2783 - 3-oxoacyl-(acyl-carrier-protein) reductase 2758 61.05 0 3171726..3172490 + 254 26989503 - PP_2784 - short chain dehydrogenase/reductase family oxidoreductase 2759 62.54 0 3172493..3173776 + 427 26989504 - PP_2785 - hypothetical protein 2760 58.78 0 3173827..3174663 + 278 26989505 - PP_2786 - hypothetical protein 2761 58.31 0 3174697..3177306 + 869 26989506 - PP_2787 - transporter, putative 2762 55.47 -1 3177376..3177759 - 127 26989507 - PP_2788 - MerR family transcriptional regulator 2763 58.75 0 3177923..3178528 - 201 26989508 - PP_2789 - oxidoreductase, putative 2764 64.52 0 3178718..3180670 - 650 26989509 - PP_2790 - sigma-54 dependent sensory box protein 2765 66.05 +1 3180801..3181931 + 376 26989510 - PP_2791 - aminoglycoside phosphotransferase 2766 67.23 +1 3181928..3182284 + 118 26989511 - PP_2792 - hypothetical protein 2767 65.73 0 3182338..3183510 + 390 26989512 - PP_2793 - acyl-CoA dehydrogenase family protein 2768 70.18 +2 3183510..3184277 + 255 26989513 - PP_2794 - short chain dehydrogenase/reductase family oxidoreductase 2769 66.06 +1 3184361..3186007 + 548 26989514 - PP_2795 - acyl-CoA synthetase 2770 61.42 0 3186062..3186385 + 107 26989515 - PP_2796 - hypothetical protein 2771 63.35 0 3186382..3188040 + 552 26989516 actP PP_2797 - acetate permease 2772 62.49 0 3188302..3189210 - 302 26989517 - PP_2798 - oxidoreductase, putative 2773 61.81 0 3189267..3190646 - 459 26989518 - PP_2799 - aminotransferase 2774 66.27 +1 3190742..3191995 - 417 26989519 - PP_2800 - diaminobutyrate--2-oxoglutarate aminotransferase 2775 65.54 0 3192033..3193457 - 474 26989520 - PP_2801 - gamma-aminobutyraldehyde dehydrogenase 2776 65.47 0 3193535..3194866 - 443 26989521 - PP_2802 - amino acid permease family protein 2777 64.05 0 3194879..3196063 - 394 26989522 dhaT PP_2803 - 1,3-propanediol dehydrogenase 2778 66.10 +1 3196255..3197130 - 291 26989523 - PP_2804 - alpha/beta fold family hydrolase 2779 61.17 0 3197127..3198653 - 508 26989524 - PP_2805 - monooxygenase flavin-binding family protein 2780 60.31 0 3198930..3199511 - 193 26989525 - PP_2806 - TetR family transcriptional regulator 2781 62.27 0 3199762..3200649 + 295 26989526 - PP_2807 - hypothetical protein 2782 62.57 0 3200670..3202037 + 455 26989527 - PP_2808 - oxidoreductase, putative 2783 53.03 -2 3202049..3202774 + 241 26989528 - PP_2809 - hypothetical protein 2784 61.46 0 3203247..3204668 + 473 26989529 - PP_2810 - hypothetical protein 2785 61.75 0 3204694..3206340 + 548 26989530 - PP_2811 - hypothetical protein 2786 62.28 0 3206349..3208763 + 804 26989531 - PP_2812 - transporter, putative 2787 65.11 0 3208774..3209736 + 320 26989532 - PP_2813 - BNR domain-containing protein 2788 60.57 0 3209853..3210722 - 289 26989533 - PP_2814 - hypothetical protein 2789 65.07 0 3210961..3212214 + 417 26989534 - PP_2815 - hypothetical protein 2790 62.43 0 3212273..3212839 - 188 26989535 - PP_2816 - transcriptional regulator NfxB, putative 2791 68.95 +1 3212931..3214067 + 378 26989536 mexC PP_2817 - multidrug efflux RND membrane fusion protein MexC 2792 65.26 0 3214083..3217211 + 1042 26989537 mexD PP_2818 - multidrug efflux RND transporter MexD 2793 68.30 +1 3217208..3218614 + 468 26989538 oprJ PP_2819 - outer membrane protein OprJ 2794 65.05 0 3218697..3219254 - 185 26989539 nfxB PP_2820 - transcriptional regulator NfxB 2795 61.98 0 3219432..3219836 - 134 26989540 - PP_2821 - hypothetical protein 2796 62.75 0 3219827..3221053 + 408 26989541 - PP_2822 - hypothetical protein 2797 63.40 0 3221038..3222690 - 550 26989542 - PP_2823 - methyl-accepting chemotaxis transducer 2798 60.94 0 3223250..3223930 - 226 26989543 - PP_2824 - TetR family transcriptional regulator 2799 60.68 0 3224000..3224467 - 155 26989544 - PP_2825 - integrase, putative 2800 65.03 0 3224501..3225415 - 304 26989545 mexT PP_2826 - transcriptional regulator MexT 2801 63.54 0 3225622..3226644 + 340 26989546 - PP_2827 - alcohol dehydrogenase, zinc-containing 2802 64.36 0 3227159..3228544 + 461 26989547 - PP_2828 - hypothetical protein 2803 63.06 0 3228541..3229899 + 452 26989548 - PP_2829 - GntR family transcriptional regulator 2804 63.71 0 3230027..3231379 - 450 26989549 - PP_2830 - major facilitator family transporter 2805 64.08 0 3231395..3232630 - 411 26989550 - PP_2831 - mandelate racemase/muconate lactonizing enzyme family protein 2806 63.82 0 3232810..3233757 + 315 26989551 - PP_2832 - LysR family transcriptional regulator 2807 63.48 0 3233785..3234756 + 323 26989552 - PP_2833 - LysR family transcriptional regulator 2808 65.63 0 3234903..3236444 + 513 26989553 - PP_2834 - UxaA family hydrolase 2809 65.99 +1 3236504..3237538 + 344 26989554 - PP_2835 - Ldh family oxidoreductase 2810 65.85 0 3237559..3238776 + 405 26989555 - PP_2836 - fumarylacetoacetate hydrolase family protein 2811 62.09 0 3238867..3240177 + 436 26989556 - PP_2837 - major facilitator family transporter 2812 65.33 0 3240302..3241951 + 549 26989557 - PP_2838 - VRR-NUC domain protein 2813 64.48 0 3241921..3244209 + 762 26989558 - PP_2839 - DEAD_2 domain protein 2814 65.48 0 3244310..3245491 - 393 26989559 - PP_2840 - NnrS family protein 2815 64.16 0 3245743..3246621 + 292 26989560 - PP_2841 - phage integrase family site specific recombinase 2816 66.31 +1 3246899..3247732 + 277 26989561 ureD PP_2842 - urease accessory protein UreD 2817 64.03 0 3247742..3248044 + 100 26989562 ureA PP_2843 - urease subunit gamma 2818 65.09 0 3248064..3248381 + 105 26989563 ureB PP_2844 - urease subunit beta 2819 65.20 0 3248378..3250081 + 567 26989564 ureC PP_2845 - urease subunit alpha 2820 65.87 +1 3250091..3250594 + 167 26989565 ureE PP_2846 - urease accessory protein UreE 2821 65.93 +1 3250613..3251158 + 181 26989566 ureJ PP_2847 - HupE/UreJ protein 2822 68.00 +1 3251158..3251832 + 224 26989567 ureF PP_2848 - urease accessory protein UreF 2823 62.50 0 3251844..3252467 + 207 26989568 ureG PP_2849 - urease accessory protein UreG 2824 65.79 0 3252514..3252627 + 37 26989569 - PP_2850 - hypothetical protein 2825 61.32 0 3252710..3253438 - 242 26989570 - PP_2851 - hypothetical protein 2826 64.08 0 3253533..3255734 - 733 26989571 - PP_2852 - sulfatase domain-containing protein 2827 59.56 0 3255870..3257150 - 426 26989572 - PP_2853 - hypothetical protein 2828 59.76 0 3257197..3257949 - 250 26989573 - PP_2854 - hypothetical protein 2829 60.50 0 3257995..3258675 - 226 26989574 - PP_2855 - hypothetical protein 2830 58.68 0 3258737..3260188 - 483 26989575 - PP_2856 - hypothetical protein 2831 61.66 0 3260238..3260816 - 192 26989576 - PP_2857 - hypothetical protein 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.