version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2255 58.33 0 2597776..2598375 + 199 26989000 - PP_2276 - phage exonuclease, putative 2256 45.74 -2 2598659..2600044 + 461 26989001 - PP_2277 - hypothetical protein 2257 52.31 -2 2600099..2600293 + 64 26989002 - PP_2278 - hypothetical protein 2258 59.05 0 2600521..2602095 + 524 26989003 - PP_2279 - head-to-tail joining protein 2259 53.70 -2 2602073..2602234 + 53 26989004 - PP_2280 - hypothetical protein 2260 61.79 0 2602234..2603013 + 259 26989005 - PP_2281 - capsid assembly protein, putative 2261 60.47 0 2603867..2604835 + 322 26989006 - PP_2282 - minor capsid protein 10 2262 59.52 0 2604897..2605484 + 195 26989007 - PP_2283 - tail tubular protein A 2263 59.25 0 2605488..2607833 + 781 26989008 - PP_2284 - tail tubular protein B 2264 61.85 0 2608287..2608847 + 186 26989009 - PP_2285 - hypothetical protein 2265 60.32 0 2608857..2611046 + 729 26989010 - PP_2286 - hypothetical protein 2266 61.10 0 2611059..2615768 + 1569 26989011 16 PP_2287 - phage internal core protein 2267 60.39 0 2615831..2617471 + 546 26989012 - PP_2288 - phage tail fiber protein 2268 61.11 0 2617471..2617974 + 167 26989013 - PP_2289 - hypothetical protein 2269 56.12 -1 2618021..2618257 + 78 26989014 - PP_2290 - hypothetical protein 2270 57.29 -1 2618244..2618531 + 95 26989015 - PP_2291 - hypothetical protein 2271 48.90 -2 2618539..2619309 - 256 26989016 - PP_2292 - hypothetical protein 2272 59.03 0 2619458..2621146 + 562 26989017 - PP_2293 - DNA maturase B 2273 47.85 -2 2621183..2621623 + 146 26989018 - PP_2294 - hypothetical protein 2274 57.95 0 2623407..2623991 + 194 26989019 - PP_2295 - antirestriction protein, putative 2275 53.78 -1 2624406..2624762 + 118 26989020 - PP_2296 - hypothetical protein 2276 59.64 0 2624995..2625819 + 274 26989021 - PP_2297 - integrative genetic element Ppu40, integrase 2277 60.77 0 2626344..2626682 + 112 26989022 - PP_2298 - hypothetical protein 2278 58.78 0 2626913..2628244 + 443 26989023 tig PP_2299 - trigger factor 2279 60.44 0 2628336..2628977 + 213 26989024 clpP PP_2300 - ATP-dependent Clp protease proteolytic subunit 2280 58.31 0 2629041..2630369 + 442 26989025 clpX PP_2301 - ATP-dependent protease ATP-binding subunit 2281 60.74 0 2630533..2632929 + 798 26989026 lon-2 PP_2302 - ATP-dependent protease La 2282 58.97 0 2633082..2633354 + 90 26989027 hupB PP_2303 - histone family protein DNA-binding protein 2283 61.32 0 2633536..2635407 + 623 26989028 - PP_2304 - PpiC-type peptidyl-prolyl cis-trans isomerase 2284 61.70 0 2635524..2636570 - 348 26989029 - PP_2305 - patatin 2285 61.65 0 2636742..2637020 + 92 26989030 - PP_2306 - putative lipoprotein 2286 64.10 0 2637035..2637814 + 259 26989031 - PP_2307 - CHAD domain containing protein 2287 64.41 0 2637892..2638689 + 265 26989032 - PP_2308 - acyl-CoA thioesterase II, putative 2288 63.69 0 2638731..2639099 - 122 26989033 - PP_2309 - hypothetical protein 2289 63.69 0 2639175..2640653 - 492 26989034 - PP_2310 - methyl-accepting chemotaxis sensory transducer 2290 65.54 0 2640780..2641577 - 265 26989035 - PP_2311 - TatD family hydrolase 2291 63.89 0 2641735..2643141 + 468 26989036 - PP_2312 - lytic transglycosylase family protein 2292 61.64 0 2643254..2643691 + 145 26989037 - PP_2313 - DoxX family protein 2293 64.08 0 2643940..2644248 + 102 26989038 - PP_2314 - hypothetical protein 2294 57.46 -1 2644260..2644748 + 162 26989039 greB PP_2315 - transcription elongation factor GreB 2295 67.27 +1 2644812..2647310 - 832 26989040 - PP_2316 - hypothetical protein 2296 67.25 +1 2647316..2648002 - 228 26989041 - PP_2317 - ABC transporter ATP-binding protein 2297 60.23 0 2648013..2648618 + 201 26989042 - PP_2318 - GDSL family lipase 2298 66.67 +1 2648647..2648967 + 106 26989043 - PP_2319 - hypothetical protein 2299 61.76 0 2649081..2650058 + 325 26989044 - PP_2320 - ErfK/YbiS/YcfS/YnhG family protein 2300 52.08 -2 2650090..2650185 + 31 26989045 - PP_2321 - hypothetical protein 2301 58.33 0 2650192..2650443 - 83 26989046 oprI PP_2322 - outer membrane lipoprotein OprI 2302 58.56 0 2650801..2651232 + 143 26989047 - PP_2323 - hypothetical protein 2303 61.01 0 2651302..2652414 - 370 26989048 aroF-1 PP_2324 - phospho-2-dehydro-3-deoxyheptonate aldolase 2304 65.30 0 2652611..2653558 + 315 26989049 - PP_2325 - 2-dehydropantoate 2-reductase 2305 63.05 0 2653683..2654180 + 165 26989050 - PP_2326 - universal stress protein 2306 59.69 0 2654309..2655283 + 324 26989051 cysB PP_2327 - transcriptional regulator CysB 2307 62.31 0 2655453..2656187 - 244 26989052 cysH PP_2328 - phosphoadenosine phosphosulfate reductase 2308 66.37 +1 2656268..2657608 - 446 26989053 pabB PP_2329 - para-aminobenzoate synthase, subunit I 2309 62.18 0 2657817..2658797 - 326 26989054 - PP_2330 - alpha-L-glutamate ligase-like protein 2310 61.46 0 2658797..2660332 - 511 26989055 - PP_2331 - hypothetical protein 2311 62.01 0 2660338..2660874 - 178 26989056 - PP_2332 - hypothetical protein 2312 63.32 0 2661181..2661897 + 238 26989057 - PP_2333 - GntR family transcriptional regulator 2313 62.51 0 2661894..2662784 + 296 26989058 prpB PP_2334 - 2-methylisocitrate lyase 2314 63.12 0 2662845..2663972 + 375 26989059 - PP_2335 - methylcitrate synthase 2315 65.01 0 2664135..2666723 + 862 26989060 - PP_2336 - aconitate hydratase 2316 64.06 0 2666789..2667979 + 396 26989061 - PP_2337 - hypothetical protein 2317 63.30 0 2668146..2669630 + 494 26989062 prpD PP_2338 - 2-methylcitrate dehydratase 2318 63.60 0 2669705..2672314 - 869 26989063 acnB PP_2339 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2319 60.31 0 2672684..2673202 + 172 26989064 - PP_2340 - hypothetical protein 2320 60.22 0 2673213..2673569 - 118 26989065 - PP_2341 - 6-pyruvoyl tetrahydrobiopterin synthase, putative 2321 56.41 -1 2673829..2674023 - 64 26989066 - PP_2342 - hypothetical protein 2322 50.14 -2 2674015..2674746 + 243 26989067 - PP_2343 - hypothetical protein 2323 67.13 +1 2675052..2676131 - 359 26989068 - PP_2344 - hypothetical protein 2324 59.87 0 2676369..2676677 + 102 26989069 - PP_2345 - hypothetical protein 2325 61.27 0 2676677..2676991 + 104 26989070 - PP_2346 - hypothetical protein 2326 65.77 0 2676992..2677660 + 222 26989071 - PP_2347 - winged helix family two component transcriptional regulator 2327 65.53 0 2677657..2678976 + 439 26989072 - PP_2348 - integral membrane sensor signal transduction histidine kinase 2328 65.54 0 2679257..2680411 + 384 26989073 - PP_2349 - CBS domain-containing protein 2329 65.63 0 2680385..2681251 - 288 26989074 - PP_2350 - LysR family transcriptional regulator 2330 64.34 0 2681432..2683321 + 629 26989075 - PP_2351 - acetyl-CoA synthetase, putative 2331 62.77 0 2683434..2684561 - 375 26989076 - PP_2352 - AFG1-family ATPase 2332 60.54 0 2684622..2684915 + 97 26989077 - PP_2353 - hypothetical protein 2333 64.11 0 2685331..2687718 - 795 26989078 - PP_2354 - multi-sensor hybrid histidine kinase 2334 62.77 0 2687732..2688193 - 153 26989079 - PP_2355 - response regulator receiver protein 2335 63.23 0 2688209..2690476 - 755 26989080 - PP_2356 - phytochrome family protein, putative 2336 64.31 0 2690658..2691251 + 197 26989081 - PP_2357 - spore coat U domain protein 2337 64.25 0 2691282..2691818 + 178 26989082 - PP_2358 - spore coat U domain protein 2338 64.98 0 2691837..2692370 + 177 26989083 - PP_2359 - spore coat U domain protein 2339 65.08 0 2692374..2692877 + 167 26989084 - PP_2360 - spore coat U domain protein 2340 66.16 +1 2692900..2693694 + 264 26989085 csuC PP_2361 - type 1 pili usher pathway chaperone CsuC 2341 63.87 0 2693707..2696100 + 797 26989086 csuD PP_2362 - fimbrial biogenesis outer membrane usher protein 2342 62.86 0 2696097..2697068 + 323 26989087 csuE PP_2363 - spore coat U domain protein 2343 63.53 0 2697145..2698293 - 382 26989088 - PP_2364 - hypothetical protein 2344 62.14 0 2698435..2699208 - 257 26989089 - PP_2365 - AraC family transcriptional regulator 2345 65.24 0 2699245..2700507 - 420 26989090 - PP_2366 - antibiotic MFS transporter, putative 2346 66.33 +1 2700640..2701827 - 395 26989091 - PP_2367 - major facilitator family transporter 2347 62.69 0 2701833..2702636 - 267 26989092 dkgB PP_2368 - 2,5-diketo-D-gluconate reductase B 2348 62.56 0 2702841..2707028 + 1395 26989093 - PP_2369 - leucine-rich repeat-containing protein 2349 62.42 0 2707075..2707569 - 164 26989094 - PP_2370 - hypothetical protein 2350 63.40 0 2707553..2709205 - 550 26989095 cysI PP_2371 - sulphite reductase hemoprotein, beta subunit 2351 64.44 0 2709419..2710495 + 358 26989096 - PP_2372 - periplasmic binding protein/LacI transcriptional regulator 2352 55.13 -1 2710539..2710694 + 51 26989097 - PP_2373 - hypothetical protein 2353 62.14 0 2711008..2711250 - 80 26989098 - PP_2374 - hypothetical protein 2354 62.65 0 2711393..2715100 - 1235 26989099 metH PP_2375 - B12-dependent methionine synthase 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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