version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1994 65.54 0 2285713..2286600 + 295 26988739 - PP_2014 - rhomboid family protein 1995 57.47 -1 2286614..2286874 + 86 26988740 - PP_2015 - hypothetical protein 1996 64.50 0 2286871..2287701 + 276 26988741 - PP_2016 - hypothetical protein 1997 63.28 0 2287715..2290372 + 885 26988742 pepN PP_2017 - aminopeptidase N 1998 67.60 +1 2290647..2291606 + 319 26988743 - PP_2018 - BNR domain-containing protein 1999 60.58 0 2291603..2294002 + 799 26988744 - PP_2019 - hypothetical protein 2000 61.58 0 2294003..2294356 + 117 26988745 - PP_2020 - hypothetical protein 2001 64.37 0 2294322..2295452 + 376 26988746 - PP_2021 - hypothetical protein 2002 56.41 -1 2295442..2295675 - 77 26988747 - PP_2022 - hypothetical protein 2003 66.00 +1 2295884..2296483 - 199 26988748 - PP_2023 - glutathione S-transferase family protein 2004 65.98 +1 2296474..2300118 - 1214 26988749 sbcC PP_2024 - SMC domain protein 2005 65.62 0 2300115..2301353 - 412 26988750 sbcD PP_2025 - nuclease SbcCD, D subunit 2006 59.55 0 2302502..2302768 - 88 26988751 - PP_2026 - hypothetical protein 2007 67.10 +1 2303207..2304838 - 543 26988752 - PP_2027 - hypothetical protein 2008 68.06 +1 2304835..2306553 - 572 26988753 - PP_2028 - TPR domain-containing protein 2009 68.34 +1 2306550..2307626 - 358 26988754 - PP_2029 - von Willebrand factor type A domain-containing protein 2010 69.29 +1 2307619..2308113 - 164 26988755 - PP_2030 - hypothetical protein 2011 65.83 0 2308110..2309066 - 318 26988756 - PP_2031 - hypothetical protein 2012 65.10 0 2309059..2310018 - 319 26988757 - PP_2032 - ATPase, putative 2013 65.42 0 2310196..2311557 + 453 26988758 - PP_2033 - hypothetical protein 2014 66.11 +1 2311593..2312852 - 419 26988759 - PP_2034 - major facilitator superfamily MFS_1 2015 66.26 +1 2312870..2314084 - 404 26988760 benE-1 PP_2035 - benzoate transporter 2016 64.86 0 2314234..2315121 - 295 26988761 - PP_2036 - dihydrodipicolinate synthetase 2017 63.09 0 2315166..2315948 - 260 26988762 - PP_2037 - hypothetical protein 2018 63.02 0 2316044..2317741 + 565 26988763 - PP_2038 - long-chain-fatty-acid--CoA ligase, putative 2019 62.72 0 2317756..2318922 + 388 26988764 - PP_2039 - acyl-CoA dehydrogenase, putative 2020 65.35 0 2318985..2320280 + 431 26988765 - PP_2040 - major facilitator family transporter 2021 64.44 0 2320293..2321237 - 314 26988766 - PP_2041 - LysR family transcriptional regulator 2022 62.68 0 2321449..2323305 + 618 26988767 - PP_2042 - hypothetical protein 2023 64.94 0 2323310..2324638 + 442 26988768 - PP_2043 - hypothetical protein 2024 68.73 +1 2324638..2325024 + 128 26988769 - PP_2044 - hypothetical protein 2025 64.02 0 2325339..2327300 - 653 26988770 - PP_2045 - metallo-beta-lactamase family protein 2026 67.10 +1 2327402..2328325 - 307 26988771 - PP_2046 - LysR family transcriptional regulator 2027 65.05 0 2328410..2329648 + 412 26988772 - PP_2047 - 3-hydroxyacyl-CoA dehydrogenase family protein 2028 65.26 0 2329570..2331420 + 616 26988773 - PP_2048 - acyl-CoA dehydrogenase, putative 2029 66.41 +1 2331454..2332617 + 387 26988774 - PP_2049 - alcohol dehydrogenase, iron-containing 2030 62.47 0 2332617..2333069 + 150 26988775 - PP_2050 - hypothetical protein 2031 65.49 0 2333066..2334250 + 394 26988776 atoB PP_2051 - acetyl-CoA acetyltransferase 2032 61.53 0 2334330..2336453 - 707 26988777 - PP_2052 - HAD superfamily hydrolase 2033 58.25 0 2336850..2337146 + 98 26988778 - PP_2053 - hypothetical protein 2034 63.20 0 2337165..2338058 - 297 26988779 - PP_2054 - LysR family transcriptional regulator 2035 64.54 0 2338205..2339284 + 359 26988780 - PP_2055 - hypothetical protein 2036 62.42 0 2339344..2340663 + 439 26988781 dctM PP_2056 - sodium:dicarboxylate symporter 2037 62.07 0 2340778..2342082 + 434 26988782 - PP_2057 - citrate transporter 2038 61.96 0 2342146..2343399 + 417 26988783 - PP_2058 - outer membrane porin 2039 64.66 0 2343452..2343700 - 82 26988784 - PP_2059 - CsbD family protein 2040 62.72 0 2343847..2344302 - 151 26988785 soxR PP_2060 - transcriptional regulator SoxR 2041 53.52 -2 2344434..2344646 - 70 26988786 - PP_2061 - hypothetical protein 2042 49.68 -2 2344721..2345344 - 207 26988787 - PP_2062 - hypothetical protein 2043 50.48 -2 2346543..2346647 + 34 26988788 - PP_2063 - hypothetical protein 2044 68.49 +1 2346697..2347794 + 365 26988789 - PP_2064 - efflux transporter, RND family, MFP subunit 2045 64.72 0 2347791..2350874 + 1027 26988790 - PP_2065 - acriflavin resistance protein 2046 65.75 0 2350928..2351692 - 254 26988791 - PP_2066 - GntR family transcriptional regulator 2047 63.64 0 2351747..2353330 - 527 26988792 - PP_2067 - EmrB/QacA family drug resistance transporter 2048 66.82 +1 2353251..2354528 - 425 26988793 - PP_2068 - multidrug efflux MFS membrane fusion protein, putative 2049 67.51 +1 2354586..2356007 - 473 26988794 - PP_2069 - multidrug efflux MFS outer membrane protein, putative 2050 66.53 +1 2356108..2356818 - 236 26988795 - PP_2070 - AraC family transcriptional regulator 2051 59.43 0 2356988..2357374 - 128 26988796 - PP_2071 - hypothetical protein 2052 64.61 0 2357483..2358307 - 274 26988797 - PP_2072 - AraC family transcriptional regulator 2053 61.24 0 2358327..2358842 - 171 26988798 - PP_2073 - acetyltransferase 2054 63.85 0 2359040..2359963 + 307 26988799 - PP_2074 - LysR family transcriptional regulator 2055 55.73 -1 2360020..2361153 - 377 26988800 - PP_2075 - hypothetical protein 2056 60.46 0 2361150..2363873 - 907 26988801 - PP_2076 - hypothetical protein 2057 66.18 +1 2364206..2365438 - 410 26988802 lysA-1 PP_2077 - diaminopimelate decarboxylase 2058 64.24 0 2365562..2366467 + 301 26988803 - PP_2078 - DNA-binding transcriptional regulator LysR 2059 57.30 -1 2366551..2367009 - 152 26988804 - PP_2079 - hypothetical protein 2060 63.74 0 2367054..2372045 + 1663 26988805 - PP_2080 - NAD-glutamate dehydrogenase 2061 55.92 -1 2372157..2372975 - 272 26988806 - PP_2081 - hypothetical protein 2062 63.22 0 2373167..2375542 + 791 26988807 ppsA PP_2082 - phosphoenolpyruvate synthase 2063 64.75 0 2375644..2376636 + 330 26988808 - PP_2083 - lipase, putative 2064 59.35 0 2376841..2377332 + 163 26988809 menG PP_2084 - ribonuclease activity regulator protein RraA 2065 63.96 0 2377357..2378355 + 332 26988810 cmaX PP_2085 - cmaX protein 2066 63.37 0 2378443..2378715 + 90 26988811 crfX PP_2086 - hypothetical protein 2067 61.33 0 2378718..2379542 + 274 26988812 cmpX PP_2087 - TM helix repeat-containing protein 2068 55.50 -1 2379632..2380222 + 196 26988813 sigX PP_2088 - RNA polymerase sigma factor SigX 2069 58.65 0 2380334..2381368 + 344 26988814 oprF PP_2089 - OmpF family protein 2070 65.18 0 2381455..2382195 - 246 26988815 cobA-1 PP_2090 - uroporphyrin-III C-methyltransferase 2071 67.03 +1 2382223..2383893 - 556 26988816 - PP_2091 - serine/threonine-protein kinase, putative 2072 66.18 +1 2383903..2385138 - 411 26988817 nasA PP_2092 - nitrite transporter 2073 62.33 0 2385299..2385874 - 191 26988818 nasT PP_2093 - response regulator receiver and ANTAR domain protein 2074 67.08 +1 2385886..2387100 - 404 26988819 - PP_2094 - nitrate-binding protein NasS, putative 2075 64.71 0 2387238..2388260 + 340 26988820 pyrD PP_2095 - dihydroorotate dehydrogenase 2 2076 64.30 0 2389137..2391374 + 745 26988821 - PP_2096 - 23S rRNA m(2)G2445 methyltransferase 2077 65.13 0 2391469..2393871 + 800 26988822 - PP_2097 - diguanylate cyclase with PAS/PAC sensor 2078 62.70 0 2393977..2395389 - 470 26988823 dacB PP_2098 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2079 57.39 -1 2395632..2395976 - 114 26988824 - PP_2099 - hypothetical protein 2080 64.19 0 2396018..2399653 - 1211 26988825 - PP_2100 - two-component sensor protein 2081 54.65 -1 2399656..2400279 - 207 26988826 - PP_2101 - LuxR family DNA-binding response regulator 2082 63.96 0 2400554..2401885 - 443 26988827 - PP_2102 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 2083 64.24 0 2402034..2402363 - 109 26988828 - PP_2103 - hypothetical protein 2084 64.27 0 2402360..2402734 - 124 26988829 - PP_2104 - hypothetical protein 2085 64.44 0 2402744..2403058 - 104 26988830 - PP_2105 - hypothetical protein 2086 63.69 0 2403371..2404579 + 402 26988831 - PP_2106 - Rh family protein/ammonium transporter 2087 59.58 0 2404653..2404892 + 79 26988832 - PP_2107 - glutaredoxin 2 2088 61.57 0 2405001..2405432 + 143 26988833 - PP_2108 - peptidase M15A 2089 62.46 0 2405498..2405806 + 102 26988834 - PP_2109 - hypothetical protein 2090 63.60 0 2406996..2408561 - 521 26988835 aer-2 PP_2111 - aerotaxis receptor Aer-2 2091 64.15 0 2408703..2411444 - 913 26988836 acnA PP_2112 - aconitate hydratase 2092 62.63 0 2411669..2412733 + 354 26988837 - PP_2113 - putative RNA 2'-O-ribose methyltransferase 2093 57.45 -1 2413154..2414455 + 433 26988838 - PP_2114 - ISPpu8, transposase 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.