version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1607 64.53 0 1816125..1816874 + 249 26988352 surE PP_1620 - stationary phase survival protein SurE 1608 64.80 0 1816853..1817548 + 231 26988353 pcm PP_1621 - protein-L-isoaspartate O-methyltransferase 1609 61.60 0 1817855..1818643 + 262 26988354 nlpD PP_1622 - peptidase M23B 1610 58.53 0 1818752..1819759 + 335 26988355 rpoS PP_1623 - RNA polymerase sigma factor RpoS 1611 60.13 0 1820234..1821655 + 473 26988356 - PP_1624 - group II intron-encoding maturase 1612 58.33 0 1822212..1822535 - 107 26988357 - PP_1625 - ferrodoxin, 4Fe-4S 1613 65.42 0 1822676..1825249 - 857 26988358 mutS PP_1626 - DNA mismatch repair protein 1614 62.00 0 1825410..1826501 + 363 26988359 - PP_1627 - hypothetical protein 1615 65.63 0 1826557..1827039 + 160 26988360 - PP_1628 - CinA domain-containing protein 1616 59.27 0 1827143..1828210 + 355 26988361 recA PP_1629 - recombinase A 1617 62.63 0 1828232..1828702 + 156 26988362 recX PP_1630 - recombination regulator RecX 1618 61.04 0 1828979..1830097 - 372 26988363 - PP_1631 - hypothetical protein 1619 65.12 0 1830144..1830467 + 107 26988364 - PP_1632 - hypothetical protein 1620 62.38 0 1830482..1830901 - 139 26988365 - PP_1633 - hypothetical protein 1621 63.71 0 1831118..1831828 + 236 26988366 - PP_1634 - DTW domain containing protein 1622 61.75 0 1832008..1832658 + 216 26988367 - PP_1635 - LuxR family two component transcriptional regulator 1623 64.21 0 1832732..1833097 + 121 26988368 dgkA-1 PP_1636 - diacylglycerol kinase 1624 60.19 0 1833094..1834020 - 308 26988369 - PP_1637 - LysR family transcriptional regulator 1625 60.77 0 1834138..1834917 + 259 26988370 fpr PP_1638 - oxidoreductase FAD/NAD(P)-binding domain protein 1626 61.21 0 1835060..1835554 - 164 26988371 - PP_1639 - hypothetical protein 1627 59.33 0 1835686..1836285 - 199 26988372 - PP_1640 - hypothetical protein 1628 60.12 0 1836549..1837373 + 274 26988373 - PP_1641 - PP-loop domain protein 1629 61.90 0 1837378..1838049 + 223 26988374 - PP_1642 - hypothetical protein 1630 63.29 0 1838153..1838566 - 137 26988375 - PP_1643 - hypothetical protein 1631 68.32 +1 1838559..1839164 - 201 26988376 wrbA PP_1644 - trp repressor binding protein 1632 66.67 +1 1839161..1839514 - 117 26988377 arsC-1 PP_1645 - arsenate reductase 1633 62.37 0 1839600..1840064 + 154 26988378 - PP_1646 - alkyl hydroperoxide reductase/thiol specific antioxidant/ Mal allergen 1634 63.66 0 1840100..1840531 - 143 26988379 - PP_1647 - hypothetical protein 1635 63.24 0 1840501..1840938 - 145 26988380 - PP_1648 - hypothetical protein 1636 65.89 +1 1840970..1841998 - 342 26988381 ldhA PP_1649 - D-lactate dehydrogenase 1637 64.20 0 1842036..1844789 - 917 26988382 gacS PP_1650 - multi-sensor hybrid histidine kinase 1638 62.15 0 1844884..1845702 + 272 26988383 - PP_1651 - winged helix family two component transcriptional regulator 1639 65.07 0 1845706..1847082 + 458 26988384 - PP_1652 - sensor histidine kinase 1640 57.56 -1 1847276..1848241 + 321 26988385 - PP_1653 - ISPpu10, transposase 1641 62.56 0 1848556..1849455 + 299 26988386 cysM PP_1654 - cysteine synthase B 1642 66.67 +1 1849456..1850814 + 452 26988387 rumA PP_1655 - 23S rRNA 5-methyluridine methyltransferase 1643 63.05 0 1850911..1853151 + 746 26988388 relA PP_1656 - (p)ppGpp synthetase I, SpoT/RelA 1644 63.07 0 1853275..1854108 + 277 26988389 mazG PP_1657 - nucleoside triphosphate pyrophosphohydrolase 1645 58.33 0 1854135..1854674 + 179 26988390 - PP_1658 - hypothetical protein 1646 63.98 0 1854985..1856325 + 446 26988391 - PP_1659 - hypothetical protein 1647 63.28 0 1856291..1856821 + 176 26988392 - PP_1660 - hypothetical protein 1648 64.85 0 1856818..1859076 + 752 26988393 - PP_1661 - dehydrogenase subunit, putative 1649 54.39 -1 1859177..1859404 - 75 26988394 - PP_1662 - hypothetical protein 1650 62.31 0 1859560..1860270 - 236 26988395 - PP_1663 - hypothetical protein 1651 64.37 0 1860279..1860932 - 217 26988396 purN PP_1664 - phosphoribosylglycinamide formyltransferase 1652 64.97 0 1860932..1861990 - 352 26988397 purM PP_1665 - phosphoribosylaminoimidazole synthetase 1653 67.13 +1 1862311..1863378 + 355 26988398 - PP_1666 - hypothetical protein 1654 62.85 0 1863391..1864464 + 357 26988399 - PP_1667 - hypothetical protein 1655 63.56 0 1864663..1865370 + 235 26988400 - PP_1668 - DNA replication initiation factor 1656 61.24 0 1865492..1866136 + 214 26988401 - PP_1669 - NLP/P60 protein 1657 62.55 0 1866279..1866812 + 177 26988402 - PP_1670 - NLP/P60 protein 1658 70.83 +2 1866949..1867116 - 55 26988403 - PP_1671 - hypothetical protein 1659 62.75 0 1867275..1867886 + 203 26988404 cobO PP_1672 - cob(I)yrinic acid a,c-diamide adenosyltransferase 1660 67.98 +1 1867883..1869178 + 431 26988405 cobB PP_1673 - cobyrinic acid a,c-diamide synthase 1661 66.21 +1 1869175..1869825 + 216 26988406 - PP_1674 - cob(II)yrinic acid a,c-diamide reductase 1662 68.94 +1 1869807..1870730 + 307 26988407 cobD PP_1675 - cobalamin biosynthesis protein 1663 68.88 +1 1870723..1871715 + 330 26988408 cobC PP_1676 - threonine-phosphate decarboxylase 1664 64.05 0 1871712..1873166 + 484 26988409 cobQ PP_1677 - cobyric acid synthase 1665 64.75 0 1873168..1873689 + 173 26988410 cobU PP_1678 - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1666 67.23 +1 1873686..1874741 + 351 26988411 cobT PP_1679 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1667 67.20 +1 1874738..1875304 + 188 26988412 - PP_1680 - alpha-ribazole-5'-phosphate phosphatase 1668 64.68 0 1875273..1876028 + 251 26988413 cobS PP_1681 - cobalamin synthase 1669 63.37 0 1876059..1877363 + 434 26988414 - PP_1682 - glycosy hydrolase family protein 1670 66.17 +1 1877426..1877830 + 134 26988415 - PP_1683 - MarR family transcriptional regulator 1671 63.72 0 1877875..1879095 + 406 26988416 - PP_1684 - major facilitator transporter 1672 59.35 0 1879092..1879214 + 40 26988417 - PP_1685 - hypothetical protein 1673 58.62 0 1879204..1879812 + 202 26988418 - PP_1686 - glutathione peroxidase 1674 57.33 -1 1879948..1880247 - 99 26988419 - PP_1687 - hypothetical protein 1675 62.69 0 1880323..1881252 + 309 26988420 - PP_1688 - LysR family transcriptional regulator 1676 59.87 0 1881294..1882559 - 421 26988421 - PP_1689 - aromatic hydrocarbon degradation protein 1677 62.73 0 1882707..1883189 - 160 26988422 - PP_1690 - hypothetical protein 1678 60.44 0 1883439..1883663 - 74 26988423 - PP_1691 - hypothetical protein 1679 65.02 0 1884609..1885034 + 141 26988424 - PP_1692 - Sel1 domain protein repeat-containing protein 1680 65.64 0 1885106..1885300 - 64 26988425 - PP_1693 - hypothetical protein 1681 63.98 0 1885331..1886818 + 495 26988426 - PP_1694 - hypothetical protein 1682 64.86 0 1886790..1890269 - 1159 26988427 - PP_1695 - integral membrane sensor hybrid histidine kinase 1683 63.95 0 1890396..1891574 - 392 26988428 - PP_1696 - major facilitator superfamily MFS_1 1684 63.11 0 1891561..1892487 + 308 26988429 - PP_1697 - GntR family transcriptional regulator 1685 62.27 0 1892582..1893856 + 424 26988430 - PP_1698 - major facilitator family transporter 1686 65.36 0 1893872..1894714 + 280 26988431 - PP_1699 - amidohydrolase 2 1687 62.29 0 1894764..1896749 + 661 26988432 - PP_1700 - phospholipid/glycerol acyltransferase 1688 63.52 0 1896753..1897070 - 105 26988433 sugE PP_1701 - small multidrug resistance protein 1689 61.89 0 1897288..1898208 - 306 26988434 rdgC PP_1702 - recombination associated protein 1690 65.46 0 1899399..1903472 + 1357 26988435 - PP_1703 - molybdopterin oxidoreductase 1691 62.70 0 1903494..1903619 + 41 26988436 - PP_1704 - hypothetical protein 1692 65.88 +1 1903743..1906295 + 850 26988437 nirB PP_1705 - nitrite reductase (NAD(P)H), large subunit 1693 65.29 0 1906295..1906657 + 120 26988438 nirD PP_1706 - nitrite reductase (NAD(P)H), small subunit 1694 65.93 +1 1906785..1907735 - 316 26988439 - PP_1707 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 1695 65.74 0 1907760..1908518 - 252 26988440 - PP_1708 - short chain dehydrogenase/reductase family oxidoreductase 1696 66.67 +1 1908537..1909247 - 236 26988441 - PP_1709 - fumarylacetoacetate hydrolase family protein 1697 64.21 0 1909468..1910808 - 446 26988442 - PP_1710 - major facilitator superfamily transporter phthalate permease 1698 64.52 0 1911104..1912033 + 309 26988443 - PP_1711 - AraC family transcriptional regulator 1699 57.59 -1 1912059..1913468 - 469 26988444 - PP_1712 - hypothetical protein 1700 67.20 +1 1913631..1914563 + 310 26988445 pcaQ PP_1713 - LysR family transcriptional regulator 1701 60.03 0 1914817..1915569 + 250 26988446 fklB-2 PP_1714 - peptidyl-prolyl cis-trans isomerase, FKBP-type 1702 65.98 +1 1915858..1916295 + 145 26988447 - PP_1715 - hypothetical protein 1703 65.78 0 1916410..1916748 + 112 26988448 - PP_1716 - Cro/CI family transcriptional regulator 1704 64.50 0 1916745..1917113 + 122 26988449 - PP_1717 - hypothetical protein 1705 62.02 0 1917139..1918278 - 379 26988450 - PP_1718 - diguanylate phosphodiesterase 1706 60.99 0 1918339..1920453 - 704 26988451 prc PP_1719 - carboxyl-terminal protease 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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