version 1.0
Pseudomonas putida KT2440, complete genome - 1..6181863 5350 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1555 58.22 0 1762135..1762359 + 74 26988300 - PP_1568 - hypothetical protein 1556 62.89 0 1762363..1762839 + 158 26988301 - PP_1569 - hypothetical protein 1557 62.87 0 1762839..1763180 + 113 26988302 - PP_1570 - head-tail adaptor 1558 64.40 0 1763173..1763658 + 161 26988303 - PP_1571 - hypothetical protein 1559 64.23 0 1763655..1764023 + 122 26988304 - PP_1572 - hypothetical protein 1560 63.54 0 1764089..1764823 + 244 26988305 - PP_1573 - major tail protein, putative 1561 61.78 0 1764832..1765302 + 156 26988306 - PP_1574 - hypothetical protein 1562 62.96 0 1765365..1765526 + 53 26988307 - PP_1575 - hypothetical protein 1563 45.37 -2 1765588..1765911 + 107 26988308 - PP_1576 - immunity protein, putative 1564 58.60 0 1765958..1768399 + 813 26988309 - PP_1577 - lambda family phage tail tape measure protein 1565 62.08 0 1768396..1768875 + 159 26988310 - PP_1578 - hypothetical protein 1566 64.23 0 1769249..1772248 + 999 26988311 - PP_1579 - hypothetical protein 1567 57.89 0 1772258..1772713 + 151 26988312 - PP_1580 - hypothetical protein 1568 56.88 -1 1772814..1774805 + 663 26988313 - PP_1581 - BNR domain-containing protein 1569 57.94 0 1774817..1775893 + 358 26988314 - PP_1582 - hypothetical protein 1570 62.26 0 1775921..1776397 + 158 26988315 - PP_1583 - structural protein P5, putative 1571 66.87 +1 1776394..1776894 + 166 26988316 - PP_1584 - hypothetical protein 1572 61.33 0 1777554..1777853 - 99 26988317 - PP_1585 - antidote protein, putative 1573 56.63 -1 1777862..1778140 - 92 26988318 - PP_1586 - killer protein, putative 1574 62.49 0 1778337..1780037 + 566 26988319 - PP_1587 - Na+/H+ antiporter 1575 64.91 0 1780143..1781339 - 398 26988320 - PP_1588 - hypothetical protein 1576 63.49 0 1781370..1784072 - 900 26988321 glnD PP_1589 - PII uridylyl-transferase 1577 60.92 0 1784114..1784896 - 260 26988322 map PP_1590 - methionine aminopeptidase 1578 57.86 0 1785243..1785980 + 245 26988323 rpsB PP_1591 - 30S ribosomal protein S2 1579 58.33 0 1786166..1787029 + 287 26988324 tsf PP_1592 - elongation factor Ts 1580 59.95 0 1787211..1787954 + 247 26988325 pyrH PP_1593 - uridylate kinase 1581 61.29 0 1787951..1788508 + 185 26988326 frr PP_1594 - ribosome recycling factor 1582 64.15 0 1788524..1789279 + 251 26988327 uppS PP_1595 - undecaprenyl diphosphate synthase 1583 64.58 0 1789279..1790094 + 271 26988328 cdsA PP_1596 - phosphatidate cytidylyltransferase 1584 64.94 0 1790067..1791281 + 404 26988329 dxr PP_1597 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1585 62.33 0 1791347..1792705 + 452 26988330 - PP_1598 - membrane-associated zinc metalloprotease, putative 1586 60.44 0 1792779..1795139 + 786 26988331 - PP_1599 - surface antigen family outer membrane protein 1587 58.33 0 1795184..1795687 + 167 26988332 ompH PP_1600 - outer membrane chaperone Skp (OmpH) 1588 62.59 0 1795689..1796744 + 351 26988333 lpxD PP_1601 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1589 57.32 -1 1796808..1797299 + 163 26988334 fabZ PP_1602 - (3R)-hydroxymyristoyl-ACP dehydratase 1590 60.62 0 1797296..1798072 + 258 26988335 lpxA PP_1603 - UDP-N-acetylglucosamine acyltransferase 1591 66.40 +1 1798074..1799201 + 375 26988336 lpxB PP_1604 - lipid-A-disaccharide synthase 1592 62.18 0 1799203..1799826 + 207 26988337 rnhB PP_1605 - ribonuclease HII 1593 62.16 0 1800013..1803537 + 1174 26988338 dnaE PP_1606 - DNA polymerase III subunit alpha 1594 61.18 0 1803644..1804591 + 315 26988339 accA PP_1607 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 1595 67.13 +1 1804763..1806046 + 427 26988340 - PP_1608 - tRNA(Ile)-lysidine synthetase 1596 52.48 -2 1806092..1806232 + 46 26988341 - PP_1609 - hypothetical protein 1597 62.06 0 1806314..1807942 + 542 26988342 pyrG PP_1610 - CTP synthetase 1598 59.69 0 1807946..1808791 + 281 26988343 kdsA-1 PP_1611 - 2-dehydro-3-deoxyphosphooctonate aldolase 1599 60.08 0 1808946..1810235 + 429 26988344 eno PP_1612 - phosphopyruvate hydratase 1600 55.67 -1 1810404..1810685 + 93 26988345 - PP_1613 - septum formation initiator 1601 67.37 +1 1810682..1811389 + 235 26988346 ispD PP_1614 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1602 64.66 0 1811517..1812413 - 298 26988347 - PP_1615 - LysR family transcriptional regulator 1603 62.01 0 1812518..1813633 + 371 26988348 - PP_1616 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 1604 64.68 0 1813642..1814496 + 284 26988349 - PP_1617 - S-formylglutathione hydrolase 1605 63.50 0 1814609..1815082 + 157 26988350 ispF PP_1618 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1606 66.38 +1 1815079..1816137 + 352 26988351 truD PP_1619 - tRNA pseudouridine synthase D 1607 64.53 0 1816125..1816874 + 249 26988352 surE PP_1620 - stationary phase survival protein SurE 1608 64.80 0 1816853..1817548 + 231 26988353 pcm PP_1621 - protein-L-isoaspartate O-methyltransferase 1609 61.60 0 1817855..1818643 + 262 26988354 nlpD PP_1622 - peptidase M23B 1610 58.53 0 1818752..1819759 + 335 26988355 rpoS PP_1623 - RNA polymerase sigma factor RpoS 1611 60.13 0 1820234..1821655 + 473 26988356 - PP_1624 - group II intron-encoding maturase 1612 58.33 0 1822212..1822535 - 107 26988357 - PP_1625 - ferrodoxin, 4Fe-4S 1613 65.42 0 1822676..1825249 - 857 26988358 mutS PP_1626 - DNA mismatch repair protein 1614 62.00 0 1825410..1826501 + 363 26988359 - PP_1627 - hypothetical protein 1615 65.63 0 1826557..1827039 + 160 26988360 - PP_1628 - CinA domain-containing protein 1616 59.27 0 1827143..1828210 + 355 26988361 recA PP_1629 - recombinase A 1617 62.63 0 1828232..1828702 + 156 26988362 recX PP_1630 - recombination regulator RecX 1618 61.04 0 1828979..1830097 - 372 26988363 - PP_1631 - hypothetical protein 1619 65.12 0 1830144..1830467 + 107 26988364 - PP_1632 - hypothetical protein 1620 62.38 0 1830482..1830901 - 139 26988365 - PP_1633 - hypothetical protein 1621 63.71 0 1831118..1831828 + 236 26988366 - PP_1634 - DTW domain containing protein 1622 61.75 0 1832008..1832658 + 216 26988367 - PP_1635 - LuxR family two component transcriptional regulator 1623 64.21 0 1832732..1833097 + 121 26988368 dgkA-1 PP_1636 - diacylglycerol kinase 1624 60.19 0 1833094..1834020 - 308 26988369 - PP_1637 - LysR family transcriptional regulator 1625 60.77 0 1834138..1834917 + 259 26988370 fpr PP_1638 - oxidoreductase FAD/NAD(P)-binding domain protein 1626 61.21 0 1835060..1835554 - 164 26988371 - PP_1639 - hypothetical protein 1627 59.33 0 1835686..1836285 - 199 26988372 - PP_1640 - hypothetical protein 1628 60.12 0 1836549..1837373 + 274 26988373 - PP_1641 - PP-loop domain protein 1629 61.90 0 1837378..1838049 + 223 26988374 - PP_1642 - hypothetical protein 1630 63.29 0 1838153..1838566 - 137 26988375 - PP_1643 - hypothetical protein 1631 68.32 +1 1838559..1839164 - 201 26988376 wrbA PP_1644 - trp repressor binding protein 1632 66.67 +1 1839161..1839514 - 117 26988377 arsC-1 PP_1645 - arsenate reductase 1633 62.37 0 1839600..1840064 + 154 26988378 - PP_1646 - alkyl hydroperoxide reductase/thiol specific antioxidant/ Mal allergen 1634 63.66 0 1840100..1840531 - 143 26988379 - PP_1647 - hypothetical protein 1635 63.24 0 1840501..1840938 - 145 26988380 - PP_1648 - hypothetical protein 1636 65.89 +1 1840970..1841998 - 342 26988381 ldhA PP_1649 - D-lactate dehydrogenase 1637 64.20 0 1842036..1844789 - 917 26988382 gacS PP_1650 - multi-sensor hybrid histidine kinase 1638 62.15 0 1844884..1845702 + 272 26988383 - PP_1651 - winged helix family two component transcriptional regulator 1639 65.07 0 1845706..1847082 + 458 26988384 - PP_1652 - sensor histidine kinase 1640 57.56 -1 1847276..1848241 + 321 26988385 - PP_1653 - ISPpu10, transposase 1641 62.56 0 1848556..1849455 + 299 26988386 cysM PP_1654 - cysteine synthase B 1642 66.67 +1 1849456..1850814 + 452 26988387 rumA PP_1655 - 23S rRNA 5-methyluridine methyltransferase 1643 63.05 0 1850911..1853151 + 746 26988388 relA PP_1656 - (p)ppGpp synthetase I, SpoT/RelA 1644 63.07 0 1853275..1854108 + 277 26988389 mazG PP_1657 - nucleoside triphosphate pyrophosphohydrolase 1645 58.33 0 1854135..1854674 + 179 26988390 - PP_1658 - hypothetical protein 1646 63.98 0 1854985..1856325 + 446 26988391 - PP_1659 - hypothetical protein 1647 63.28 0 1856291..1856821 + 176 26988392 - PP_1660 - hypothetical protein 1648 64.85 0 1856818..1859076 + 752 26988393 - PP_1661 - dehydrogenase subunit, putative 1649 54.39 -1 1859177..1859404 - 75 26988394 - PP_1662 - hypothetical protein 1650 62.31 0 1859560..1860270 - 236 26988395 - PP_1663 - hypothetical protein 1651 64.37 0 1860279..1860932 - 217 26988396 purN PP_1664 - phosphoribosylglycinamide formyltransferase 1652 64.97 0 1860932..1861990 - 352 26988397 purM PP_1665 - phosphoribosylaminoimidazole synthetase 1653 67.13 +1 1862311..1863378 + 355 26988398 - PP_1666 - hypothetical protein 1654 62.85 0 1863391..1864464 + 357 26988399 - PP_1667 - hypothetical protein 61.83 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0