IslandPath Analysis: Pseudomonas putida KT2440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.83   STD DEV: 4.04
Pseudomonas putida KT2440, complete genome - 1..6181863
5350 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1346	 58.95	0	1546543..1547670	+	375	26988091	-	PP_1357	-	hypothetical protein
1347	 61.84	0	1547615..1548484	+	289	26988092	-	PP_1358	-	hypothetical protein
1348	 64.72	0	1548550..1549011	+	153	26988093	fxsA	PP_1359	-	FxsA
1349	 59.52	0	1549256..1549549	+	97	26988094	groES	PP_1360	-	co-chaperonin GroES
1350	 59.54	0	1549597..1551237	+	546	26988095	groEL	PP_1361	-	chaperonin GroEL
1351	 63.64	0	1551363..1552817	-	484	26988096	pykA	PP_1362	-	pyruvate kinase
1352	 62.94	0	1552956..1553384	+	142	26988097	-	PP_1363	-	hypothetical protein
1353	 56.12	-1	1553394..1553867	+	157	26988098	-	PP_1364	-	type IV pilus assembly PilZ
1354	 59.83	0	1553925..1555358	+	477	26988099	sbcB	PP_1365	-	exonuclease I
1355	 56.61	-1	1555432..1555809	-	125	26988100	-	PP_1366	-	transcriptional regulator MvaT, P16 subunit
1356	 60.45	0	1556093..1556944	+	283	26988101	purU	PP_1367	-	formyltetrahydrofolate deformylase
1357	 65.16	0	1557176..1558168	-	330	26988102	-	PP_1368	-	hypothetical protein
1358	 62.98	0	1558165..1558896	-	243	26988103	-	PP_1369	-	hypothetical protein
1359	 63.64	0	1558922..1560043	-	373	26988104	-	PP_1370	-	glycosyl transferase, group 1 family protein
1360	 61.76	0	1560212..1562086	-	624	26988105	-	PP_1371	-	methyl-accepting chemotaxis transducer
1361	 64.97	0	1562255..1563730	+	491	26988106	-	PP_1372	-	hypothetical protein
1362	 61.78	0	1563852..1565324	-	490	26988107	-	PP_1373	-	phosphate transporter
1363	 58.21	0	1565637..1565837	-	66	26988108	-	PP_1374	-	hypothetical protein
1364	 63.36	0	1566317..1567192	+	291	26988109	pcaR	PP_1375	-	pca regulon regulatory protein
1365	 64.14	0	1567513..1568859	+	448	26988110	pcaK	PP_1376	-	benzoate transport
1366	 65.25	0	1569186..1570388	+	400	26988111	pcaF	PP_1377	-	beta-ketoadipyl CoA thiolase
1367	 61.16	0	1570576..1571865	+	429	26988112	pcaT	PP_1378	-	metabolite/H+ symporter, major facilitator superfamily (MFS)
1368	 66.89	+1	1571875..1573227	+	450	26988113	pcaB	PP_1379	-	3-carboxy-cis,cis-muconate cycloisomerase
1369	 63.64	0	1573239..1574030	+	263	26988114	pcaD	PP_1380	-	3-oxoadipate enol-lactonase
1370	 61.83	0	1574041..1574433	+	130	26988115	pcaC	PP_1381	-	4-carboxymuconolactone decarboxylase
1371	 63.24	0	1574486..1575010	-	174	26988116	-	PP_1382	-	hypothetical protein
1372	 61.81	0	1575220..1576476	-	418	26988117	-	PP_1383	-	BenF-like porin
1373	 64.26	0	1576789..1578243	-	484	26988118	ttgC	PP_1384	-	RND efflux system, outer membrane lipoprotein, NodT family
1374	 61.78	0	1578240..1581392	-	1050	26988119	ttgB	PP_1385	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
1375	 62.60	0	1581396..1582550	-	384	26988120	ttgA	PP_1386	-	efflux transporter, RND family, MFP subunit
1376	 60.98	0	1582808..1583440	+	210	26988121	ttgR	PP_1387	-	TetR family transcriptional regulator
1377	 66.60	+1	1583558..1585009	-	483	26988122	-	PP_1388	-	EmrB/QacA family drug resistance transporter
1378	 62.21	0	1585385..1586260	+	291	26988123	-	PP_1389	-	carboxyphosphonoenolpyruvate phosphonomutase, putative
1379	 62.84	0	1586280..1586462	-	60	26988124	-	PP_1390	-	hypothetical protein
1380	 63.59	0	1586493..1587401	-	302	26988125	-	PP_1391	-	LysR family transcriptional regulator
1381	 62.44	0	1587585..1588199	+	204	26988126	-	PP_1392	-	NAD-dependent epimerase/dehydratase
1382	 64.84	0	1588219..1589094	-	291	26988127	-	PP_1393	-	LysR family transcriptional regulator
1383	 64.65	0	1589208..1590845	+	545	26988128	-	PP_1394	-	hypothetical protein
1384	 63.08	0	1590969..1591889	-	306	26988129	-	PP_1395	-	AraC family transcriptional regulator
1385	 61.56	0	1592092..1592385	+	97	26988130	-	PP_1396	-	antibiotic biosynthesis monooxygenase
1386	 64.79	0	1592402..1592668	+	88	26988131	-	PP_1397	-	hypothetical protein
1387	 62.21	0	1592669..1593274	-	201	26988132	-	PP_1398	-	hypothetical protein
1388	 59.37	0	1593394..1593900	-	168	26988133	-	PP_1399	-	hypothetical protein
1389	 62.95	0	1594099..1595418	-	439	26988134	-	PP_1400	-	metabolite/H+ symporter, major facilitator superfamily (MFS)
1390	 64.04	0	1595672..1597006	-	444	26988135	dctD	PP_1401	-	two component, sigma54 specific, transcriptional regulator, Fis family
1391	 65.30	0	1597000..1598757	-	585	26988136	dctB	PP_1402	-	integral membrane sensor signal transduction histidine kinase
1392	 63.53	0	1598888..1601179	-	763	26988137	bglX	PP_1403	-	periplasmic beta-glucosidase
1393	 64.89	0	1601366..1601983	+	205	26988138	-	PP_1404	-	hypothetical protein
1394	 63.16	0	1601916..1603370	-	484	26988139	-	PP_1405	-	hypothetical protein
1395	 63.40	0	1603397..1604407	-	336	26988140	-	PP_1406	-	hypothetical protein
1396	 64.38	0	1604540..1606246	-	568	26988141	-	PP_1407	-	sulfate transporter
1397	 59.12	0	1606642..1607529	-	295	26988142	phaG	PP_1408	-	alpha/beta hydrolase fold
1398	 65.81	0	1608574..1608807	-	77	26988143	-	PP_1410	-	hypothetical protein
1399	 62.08	0	1608779..1610260	-	493	26988144	-	PP_1411	-	GGDEF domain-containing protein
1400	 64.68	0	1610967..1612073	-	368	26988145	-	PP_1412	-	enoyl-CoA hydratase/isomerase
1401	 61.47	0	1612200..1612892	+	230	26988146	ung	PP_1413	-	uracil-DNA glycosylase
1402	 58.11	0	1612919..1614601	-	560	26988147	ushA	PP_1414	-	5`-nucleotidase
1403	 63.45	0	1614692..1615747	-	351	26988148	-	PP_1415	-	hypothetical protein
1404	 64.09	0	1615740..1617254	-	504	26988149	-	PP_1416	-	tricarboxylate transport protein TctA, putative
1405	 62.96	0	1617256..1617741	-	161	26988150	-	PP_1417	-	tricarboxylate transport protein TctB, putative
1406	 63.61	0	1617914..1618894	-	326	26988151	-	PP_1418	-	tricarboxylate transport protein TctC, putative
1407	 63.80	0	1618941..1620230	-	429	26988152	-	PP_1419	-	outer membrane porin
1408	 63.54	0	1620431..1621102	+	223	26988153	tctD	PP_1420	-	winged helix family two component transcriptional regulator
1409	 65.95	+1	1621083..1622474	+	463	26988154	-	PP_1421	-	integral membrane sensor signal transduction histidine kinase
1410	 61.50	0	1622540..1623352	-	270	26988155	-	PP_1422	-	putative signal transduction protein
1411	 66.45	+1	1623402..1624343	-	313	26988156	-	PP_1423	-	hypothetical protein
1412	 58.43	0	1624477..1624731	+	84	26988157	-	PP_1424	-	hypothetical protein
1413	 66.67	+1	1624715..1625173	+	152	26988158	-	PP_1425	-	hypothetical protein
1414	 64.36	0	1625230..1626834	-	534	26988159	nadB	PP_1426	-	L-aspartate oxidase
1415	 57.73	-1	1627269..1627850	+	193	26988160	algU	PP_1427	-	RNA polymerase sigma factor AlgU
1416	 62.61	0	1627884..1628474	+	196	26988161	mucA	PP_1428	-	anti sigma-E protein, RseA
1417	 61.70	0	1628487..1629452	+	321	26988162	algN	PP_1429	-	sigma E regulatory protein, MucB/RseB
1418	 61.66	0	1629584..1631062	+	492	26988163	algY	PP_1430	-	protease Do
1419	 60.28	0	1631243..1633042	+	599	26988164	lepA	PP_1431	-	GTP-binding protein LepA
1420	 60.12	0	1633048..1633902	+	284	26988165	lepB	PP_1432	-	signal peptidase I
1421	 61.30	0	1634066..1634755	+	229	26988166	rnc	PP_1433	-	ribonuclease III
1422	 59.74	0	1634742..1635650	+	302	26988167	era	PP_1434	-	GTP-binding protein Era
1423	 63.74	0	1635820..1636503	+	227	26988168	recO	PP_1435	-	DNA repair protein RecO
1424	 63.56	0	1636547..1637287	+	246	26988169	pdxJ	PP_1436	-	pyridoxal phosphate biosynthetic protein PdxJ
1425	 63.20	0	1637353..1638735	-	460	26988170	-	PP_1437	-	heavy metal sensor histidine kinase
1426	 64.15	0	1638732..1639406	-	224	26988171	czrR-2	PP_1438	-	DNA-binding response regulator CzrR
1427	 62.25	0	1639717..1639920	+	67	26988172	-	PP_1439	-	hypothetical protein
1428	 65.41	0	1639990..1640946	-	318	26988173	-	PP_1440	-	methyltransferase, putative
1429	 61.02	0	1640943..1641686	-	247	26988174	-	PP_1441	-	methyltransferase, putative
1430	 64.22	0	1641776..1642348	-	190	26988175	-	PP_1442	-	hypothetical protein
1431	 62.53	0	1642320..1644737	-	805	26988176	lon-1	PP_1443	-	ATP-dependent protease La
1432	 65.01	0	1644941..1647352	-	803	26988177	gcd	PP_1444	-	glucose dehydrogenase (pyrroloquinoline-quinone)
1433	 62.40	0	1647383..1648717	-	444	26988178	oprB-2	PP_1445	-	porin B
1434	 65.15	0	1649013..1651055	-	680	26988179	-	PP_1446	-	TonB-dependent receptor
1435	 61.04	0	1651192..1651440	+	82	26988180	-	PP_1447	-	hypothetical protein
1436	 62.42	0	1651442..1652077	+	211	26988181	-	PP_1448	-	hypothetical protein
1437	 63.62	0	1652238..1656764	-	1508	26988182	-	PP_1449	-	filamentous haemagglutinin outer membrane protein
1438	 66.20	+1	1656792..1658489	-	565	26988183	-	PP_1450	-	TPS family activation/secretion protein
1439	 61.08	0	1658635..1659189	-	184	26988184	-	PP_1451	-	hypothetical protein
1440	 63.22	0	1659212..1659763	-	183	26988185	-	PP_1452	-	NUDIX hydrolase
1441	 60.33	0	1659887..1660486	+	199	26988186	-	PP_1453	-	NUDIX hydrolase
1442	 60.95	0	1660530..1661054	+	174	26988187	-	PP_1454	-	anhydrase family 3 protein
1443	 62.67	0	1661023..1661247	+	74	26988188	-	PP_1455	-	hypothetical protein
1444	 63.25	0	1661325..1661792	+	155	26988189	-	PP_1456	-	hypothetical protein
1445	 64.55	0	1661869..1663050	+	393	26988190	purT	PP_1457	-	phosphoribosylglycinamide formyltransferase 2
61.83	MEAN

4.04	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.