IslandPath Analysis: Pseudomonas putida KT2440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.83   STD DEV: 4.04
Pseudomonas putida KT2440, complete genome - 1..6181863
5350 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
72	 63.91	0	82151..83128	-	325	26986817	qor-1	PP_0072	-	quinone oxidoreductase
73	 63.16	0	83261..84172	+	303	26986818	hemF	PP_0073	-	coproporphyrinogen III oxidase
74	 64.97	0	84198..85022	+	274	26986819	aroE	PP_0074	-	shikimate 5-dehydrogenase
75	 63.92	0	85152..86717	-	521	26986820	-	PP_0075	-	sulphate transporter
76	 59.45	0	86861..87802	-	313	26986821	-	PP_0076	-	glycine betaine-binding protein, putative
77	 63.04	0	87799..89316	-	505	26986822	betC	PP_0077	-	choline sulfatase
78	 52.94	-2	89315..89416	+	33	26986823	-	PP_0078	-	hypothetical protein
79	 62.22	0	89425..90324	+	299	26986824	-	PP_0079	-	LysR family transcriptional regulator
80	 65.05	0	90446..91063	-	205	26986825	-	PP_0080	-	hypothetical protein
81	 61.29	0	91077..91448	+	123	26986826	-	PP_0081	-	hypothetical protein
82	 65.31	0	91569..92378	-	269	26986827	trpA	PP_0082	-	tryptophan synthase subunit alpha
83	 63.14	0	92375..93592	-	405	26986828	trpB	PP_0083	-	tryptophan synthase subunit beta
84	 67.78	+1	93703..94599	+	298	26986829	trpI	PP_0084	-	LysR family transcriptional regulator
85	 57.67	-1	94596..95084	-	162	26986830	-	PP_0085	-	hypothetical protein
86	 53.70	-2	95070..95285	+	71	26986831	-	PP_0086	-	hypothetical protein
87	 60.61	0	95344..95607	+	87	26986832	-	PP_0087	-	hypothetical protein
88	 63.78	0	95679..96683	-	334	26986833	-	PP_0088	-	luciferase family protein
89	 59.86	0	96836..97261	+	141	26986834	osmC	PP_0089	-	OsmC family protein
90	 58.25	0	97274..97570	+	98	26986835	-	PP_0090	-	hypothetical protein
91	 63.04	0	97606..98019	-	137	26986836	-	PP_0091	-	putative lipoprotein
92	 58.70	0	98075..98488	-	137	26986837	-	PP_0092	-	putative lipoprotein
93	 61.60	0	98487..99650	+	387	26986838	-	PP_0093	-	hypothetical protein
94	 60.68	0	99757..100407	-	216	26986839	-	PP_0094	-	HAD superfamily hydrolase
95	 62.30	0	100529..101077	-	182	26986840	-	PP_0095	-	anhydrase family 3 protein
96	 64.33	0	101180..103231	+	683	26986841	prlC	PP_0096	-	oligopeptidase A
97	 61.70	0	103228..103509	+	93	26986842	-	PP_0097	-	hypothetical protein
98	 58.05	0	103528..103701	+	57	26986843	-	PP_0098	-	hypothetical protein
99	 62.23	0	103841..104899	+	352	26986844	-	PP_0099	-	radical SAM domain protein
100	 61.39	0	105206..105925	+	239	26986845	cynT	PP_0100	-	carbonate dehydratase
101	 65.28	0	106133..107650	+	505	26986846	-	PP_0101	-	sulphate transporter
102	 56.23	-1	107786..108676	+	296	26986847	-	PP_0102	-	hypothetical protein
103	 61.44	0	108809..109936	+	375	26986848	-	PP_0103	-	cytochrome c oxidase, subunit II
104	 59.50	0	109980..111569	+	529	26986849	-	PP_0104	-	cytochrome c oxidase, subunit I
105	 63.14	0	111579..112145	+	188	26986850	-	PP_0105	-	cytochrome C oxidase assembly protein
106	 58.67	0	112162..113049	+	295	26986851	-	PP_0106	-	cytochrome c oxidase, subunit III
107	 63.27	0	113072..114073	+	333	26986852	-	PP_0107	-	hypothetical protein
108	 64.78	0	114042..114623	+	193	26986853	-	PP_0108	-	hypothetical protein
109	 65.09	0	114633..115712	+	359	26986854	-	PP_0109	-	cytochrome oxidase assembly
110	 63.09	0	115697..116590	+	297	26986855	cyoE-1	PP_0110	-	protoheme IX farnesyltransferase
111	 61.45	0	116587..117219	+	210	26986856	-	PP_0111	-	electron transport protein SCO1/SenC
112	 60.18	0	117313..118083	-	256	26986857	-	PP_0112	-	metal ABC transporter periplasmic-binding protein
113	 59.97	0	118148..118819	-	223	26986858	-	PP_0113	-	ABC transporter, permease protein
114	 63.89	0	118819..119826	-	335	26986859	-	PP_0114	-	ABC transporter ATP-binding protein
115	 61.00	0	120054..122189	+	711	26986860	katE	PP_0115	-	hydroperoxidase II
116	 62.85	0	122250..122957	-	235	26986861	-	PP_0116	-	putative lipoprotein
117	 64.11	0	123084..123866	-	260	26986862	znuB	PP_0117	-	hypothetical protein
118	 65.63	0	123859..124632	-	257	26986863	znuC	PP_0118	-	zinc ABC transporter ATP-binding protein
119	 66.42	+1	124629..125036	-	135	26986864	-	PP_0119	-	FUR family transcriptional regulator
120	 62.49	0	125181..126089	+	302	26986865	-	PP_0120	-	periplasmic solute binding protein
121	 64.14	0	126139..127089	-	316	26986866	thrB	PP_0121	-	homoserine kinase
122	 56.60	-1	127159..127446	-	95	26986867	-	PP_0122	-	hypothetical protein
123	 64.08	0	127522..130269	+	915	26986868	polA	PP_0123	-	DNA polymerase I
124	 60.51	0	130640..131272	-	210	26986869	-	PP_0124	-	GTPase EngB
125	 59.41	0	131474..131776	+	100	26986870	-	PP_0125	-	cytochrome c-type protein
126	 62.94	0	131808..132425	+	205	26986871	-	PP_0126	-	cytochrome c4
127	 59.72	0	132577..133209	+	210	26986872	-	PP_0127	-	DsbA family thiol:disulfide interchange protein
128	 62.92	0	133222..134076	+	284	26986873	-	PP_0128	-	endonuclease/exonuclease/phosphatase
129	 62.18	0	134104..136041	+	645	26986874	-	PP_0129	-	GGDEF domain-containing protein
130	 61.47	0	136115..136903	+	262	26986875	-	PP_0130	-	N-acetylmuramoyl-L-alanine amidase family protein
131	 61.63	0	137099..138706	+	535	26986876	-	PP_0131	-	EAL domain containing protein
132	 63.41	0	138721..140502	-	593	26986877	-	PP_0132	-	multi-sensor signal transduction histidine kinase
133	 62.44	0	140499..141845	-	448	26986878	algB	PP_0133	-	two component, sigma54 specific, transcriptional regulator, Fis family
134	 63.75	0	142056..142877	+	273	26986879	-	PP_0134	-	transport-associated protein
135	 53.09	-2	143386..143547	+	53	26986880	-	PP_0135	-	hypothetical protein
136	 63.27	0	143550..144020	+	156	26986881	-	PP_0136	-	inhibitor of vertebrate lysozyme
137	 58.84	0	144766..146094	+	442	26986882	gltP	PP_0137	-	glutamate/aspartate:proton symporter
138	 64.31	0	146242..147471	+	409	26986883	-	PP_0138	-	nucleoside recognition domain protein
139	 63.99	0	147453..148088	-	211	26986884	-	PP_0139	-	putative lipoprotein
140	 62.09	0	148085..149023	-	312	26986885	-	PP_0140	-	hypothetical protein
141	 65.03	0	149027..149818	-	263	26986886	-	PP_0141	-	ABC transporter ATP-binding protein
142	 63.93	0	149815..150948	-	377	26986887	-	PP_0142	-	hypothetical protein
143	 63.55	0	151080..152105	-	341	26986888	-	PP_0143	-	hypothetical protein
144	 63.40	0	152199..153605	-	468	26986889	-	PP_0144	-	insulinase family metalloprotease
145	 62.87	0	153636..155294	-	552	26986890	-	PP_0145	-	sodium-dependent inorganic phosphate (Pi) transporter
146	 57.64	-1	155577..156374	-	265	26986891	-	PP_0146	-	integral membrane protein TerC
147	 62.16	0	156417..157724	-	435	26986892	-	PP_0147	-	citrate transporter
148	 61.98	0	157989..158393	+	134	26986893	-	PP_0148	-	hypothetical protein
149	 63.75	0	158432..160387	-	651	26986894	-	PP_0149	-	hypothetical protein
150	 63.55	0	160384..160704	-	106	26986895	-	PP_0150	-	hypothetical protein
151	 60.54	0	160741..161034	-	97	26986896	-	PP_0151	-	hypothetical protein
152	 63.25	0	161124..161504	-	126	26986897	-	PP_0152	-	hypothetical protein
153	 60.19	0	161750..161965	-	71	26986898	-	PP_0153	-	hypothetical protein
154	 61.45	0	162339..163832	-	497	26986899	-	PP_0154	-	acetyl-CoA hydrolase/transferase family protein
155	 60.75	0	164019..165455	-	478	26986900	pntB	PP_0155	-	NAD(P)(+) transhydrogenase (AB-specific)
156	 61.00	0	167324..168241	-	305	26986901	-	PP_0157	-	LysR family transcriptional regulator
157	 59.31	0	168402..169583	+	393	26986902	gcdH	PP_0158	-	acyl-CoA dehydrogenase domain-containing protein
158	 61.75	0	169597..170817	+	406	26986903	-	PP_0159	-	CAIB/BAIF family protein
159	 58.67	0	182074..184560	-	828	26986904	-	PP_0160	-	TonB-dependent siderophore receptor
160	 61.65	0	184654..185610	-	318	26986905	-	PP_0161	-	anti-FecI sigma factor, FecR
161	 61.49	0	185615..186136	-	173	26986906	-	PP_0162	-	ECF subfamily RNA polymerase sigma factor
162	 61.01	0	186225..186914	-	229	26986907	-	PP_0163	-	GntR family transcriptional regulator
163	 58.88	0	187239..187880	+	213	26986908	-	PP_0164	-	hypothetical protein
164	 62.20	0	187891..189837	+	648	26986909	-	PP_0165	-	GGDEF domain-containing protein
165	 60.49	0	189994..191370	-	458	26986910	-	PP_0166	-	HlyD family type I secretion membrane fusion protein
166	 63.19	0	191360..193516	-	718	26986911	-	PP_0167	-	toxin secretion ATP-binding protein
167	 61.03	0	194494..220542	+	8682	26986912	-	PP_0168	-	surface adhesion protein, putative
168	 61.00	0	221228..222127	+	299	26986913	-	PP_0169	-	TauD/TfdA family dioxygenase
169	 61.76	0	222145..223164	+	339	26986914	-	PP_0170	-	ABC transporter, periplasmic binding protein
170	 61.00	0	223171..224034	+	287	26986915	-	PP_0171	-	ABC transporter ATP-binding protein
171	 59.84	0	224049..224912	+	287	26986916	-	PP_0172	-	binding-protein-dependent transport systems inner membrane component
61.83	MEAN

4.04	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.