IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
45	 62.52	0	46092..46742	-	216	104779361	-	PSEEN0048	-	HAD superfamily hydrolase
46	 64.30	0	46799..47347	-	182	104779362	-	PSEEN0049	-	transferase
47	 66.72	0	47450..49501	+	683	104779363	prlC	PSEEN0050	-	oligopeptidase A
48	 63.08	0	49498..49776	+	92	104779364	-	PSEEN0051	-	hypothetical protein
49	 66.00	0	49978..51033	+	351	104779365	-	PSEEN0052	-	hypothetical protein
50	 64.58	0	51422..52141	+	239	104779366	cynT-2	PSEEN0053	-	carbonic anhydrase
51	 67.45	0	52331..53866	+	511	104779367	-	PSEEN0054	-	sulfate transporter
52	 61.68	0	53942..54583	-	213	104779368	-	PSEEN0055	-	hypothetical protein
53	 62.94	0	54963..56090	+	375	104779369	coxB	PSEEN0056	-	cytochrome c oxidase, subunit II
54	 62.77	0	56122..57711	+	529	104779370	coxA	PSEEN0057	-	cytochrome c oxidase, subunit I
55	 65.41	0	57722..58279	+	185	104779371	-	PSEEN0058	-	cytochrome C oxidase assembly protein
56	 62.27	0	58296..59183	+	295	104779372	-	PSEEN0059	-	cytochrome c oxidase, subunit III
57	 64.22	0	59281..59484	-	67	104779373	-	PSEEN0060	-	hypothetical protein
58	 66.94	0	59547..60290	+	247	104779374	-	PSEEN0061	-	hypothetical protein
59	 67.53	0	60256..60834	+	192	104779375	-	PSEEN0062	-	hypothetical protein
60	 65.36	0	60844..61917	+	357	104779376	-	PSEEN0063	-	cytochrome oxidase assembly protein
61	 65.44	0	61902..62801	+	299	104779377	-	PSEEN0064	-	protoheme IX farnesyltransferase
62	 62.72	0	62798..63430	+	210	104779378	-	PSEEN0065	-	Sco1/SenC family electron transport protein
63	 62.52	0	63585..64355	-	256	104779379	-	PSEEN0066	-	D-methionine-binding lipoprotein MetQ
64	 64.58	0	64420..65091	-	223	104779380	-	PSEEN0067	-	D-methionine ABC transporter MetI, membrane protein
65	 64.88	0	65091..66098	-	335	104779381	-	PSEEN0068	-	D-methionine ABC transporter MetN, ATP-binding protein
66	 66.24	0	66275..66982	-	235	104779382	-	PSEEN0069	-	lipoprotein
67	 68.33	0	67100..67882	-	260	104779383	znuB	PSEEN0070	-	Zinc ABC transporter, permease protein
68	 67.44	0	67875..68648	-	257	104779384	znuC	PSEEN0071	-	Zinc ABC transporter, ATP-binding protein
69	 67.90	0	68645..69130	-	161	104779385	-	PSEEN0072	-	transcriptional repressor of Zn transport system Zur
70	 65.78	0	69197..70102	+	301	104779386	-	PSEEN0073	-	Zinc ABC transporter ZnuA, periplasmic binding protein
71	 64.77	0	70201..71151	-	316	104779387	thrB	PSEEN0074	-	homoserine kinase
72	 57.39	-1	71216..71506	-	96	104779388	-	PSEEN0075	-	hypothetical protein
73	 65.62	0	71569..74337	+	922	104779389	polA	PSEEN0076	-	DNA polymerase I
74	 62.88	0	74744..75376	-	210	104779390	-	PSEEN0078	-	GTPase EngB
75	 59.08	-1	75585..75887	+	100	104779391	-	PSEEN0079	-	cytochrome c-type protein
76	 62.78	0	75919..76536	+	205	104779392	-	PSEEN0080	-	cytochrome c4
77	 60.38	0	76711..77346	+	211	104779393	dsbA	PSEEN0081	-	thiol:disulfide interchange protein, periplasmic, alkali-inducible
78	 66.20	0	77359..78213	+	284	104779394	-	PSEEN0082	-	DNAse I-like hydrolase
79	 65.76	0	78299..80284	+	661	104779395	-	PSEEN0083	-	diguanylate cyclase
80	 64.35	0	80393..81169	+	258	104779396	-	PSEEN0084	-	N-acetylmuramoyl-L-alanine amidase
81	 64.95	0	81260..82888	+	542	104779397	-	PSEEN0085	-	signal transduction protein
82	 67.06	0	82983..84761	-	592	104779398	kinB	PSEEN0086	-	alginate biosynthesis sensor protein KinB
83	 65.48	0	84758..86104	-	448	104779399	algB	PSEEN0087	-	alginate biosynthesis response regulator AlgB
84	 66.32	0	86643..86927	+	94	104779400	-	PSEEN0089	-	hypothetical protein
85	 59.26	-1	86971..87132	+	53	104779401	-	PSEEN0090	-	hypothetical protein
86	 65.82	0	87136..87606	+	156	104779402	-	PSEEN0091	-	hypothetical protein
87	 61.57	0	88337..89671	+	444	104779403	gltP	PSEEN0093	-	glutamate/aspartate:proton symporter
88	 66.91	0	89868..91097	+	409	104779404	-	PSEEN0094	-	hypothetical protein
89	 68.94	+1	91079..91693	-	204	104779405	-	PSEEN0095	-	lipoprotein
90	 65.81	0	91690..92628	-	312	104779406	-	PSEEN0096	-	hypothetical protein
91	 68.94	+1	92632..93423	-	263	104779407	-	PSEEN0097	-	ABC transporter, ATP-binding protein
92	 67.02	0	93420..94544	-	374	104779408	-	PSEEN0098	-	ABC transporter, permease protein
93	 64.61	0	94651..95673	-	340	104779409	-	PSEEN0099	-	hypothetical protein
94	 64.89	0	95809..97212	-	467	104779410	-	PSEEN0100	-	metalloprotease M16 family
95	 65.46	0	97244..98902	-	552	104779411	-	PSEEN0101	-	Na+/Pi cotransporter
96	 60.05	0	99189..99959	-	256	104779412	-	PSEEN0103	-	TerC family efflux transporter,
97	 64.22	0	100032..101339	-	435	104779413	citN	PSEEN0104	-	citrate transporter
98	 64.43	0	101608..102009	+	133	104779414	-	PSEEN0106	-	hypothetical protein
99	 66.72	0	102142..104100	-	652	104779415	-	PSEEN0107	-	hypothetical protein
100	 66.04	0	104097..104417	-	106	104779416	-	PSEEN0108	-	hypothetical protein
101	 64.63	0	104451..104744	-	97	104779417	-	PSEEN0110	-	hypothetical protein
102	 65.09	0	104835..105152	-	105	104779418	-	PSEEN0111	-	hypothetical protein
103	 65.73	0	105450..105662	-	70	104779419	-	PSEEN0112	-	hypothetical protein
104	 64.39	0	106164..107657	-	497	104779420	-	PSEEN0113	-	acetyl-CoA hydrolase/transferase
105	 63.74	0	107844..109280	-	478	104779421	pntB	PSEEN0114	-	pyridine nucleotide transhydrogenase, beta subunit
106	 62.42	0	109283..109588	-	101	104779422	pntAB	PSEEN0115	-	pyridine proton-translocating NAD(P) transhydrogenase
107	 66.76	0	109609..110730	-	373	104779423	pntAA	PSEEN0116	-	proton-translocating NAD(P) transhydrogenase
108	 66.78	0	111171..112070	-	299	104779424	-	PSEEN0118	-	LysR family transcriptional regulator
109	 62.52	0	112237..113418	+	393	104779425	gcdH	PSEEN0120	-	glutaryl-CoA dehydrogenase
110	 62.74	0	113434..114654	+	406	104779426	-	PSEEN0121	-	L-carnitine dehydratase/bile acid-inducible protein F
111	 61.32	0	121114..121581	-	155	104779427	-	PSEEN0131	-	hypothetical protein
112	 65.73	0	121613..125044	-	1143	104779428	-	PSEEN0132	-	non ribosomal peptide synthethase, loading module
113	 65.91	0	125055..125984	-	309	104779429	-	PSEEN0133	-	hypothetical protein
114	 65.51	0	125981..126757	-	258	104779430	-	PSEEN0134	-	hypothetical protein
115	 63.75	0	127336..127917	-	193	104779431	-	PSEEN0136	-	hypothetical protein
116	 62.23	0	127980..128678	-	232	104779432	-	PSEEN0137	-	GntR family transcriptional regulator
117	 64.07	0	128956..129648	+	230	104779433	-	PSEEN0138	-	hypothetical protein
118	 66.92	0	129659..131605	+	648	104779434	-	PSEEN0139	-	signal transduction protein
119	 61.99	0	131706..132047	-	113	104779435	-	PSEEN0140	-	hypothetical protein
120	 63.05	0	132210..149798	-	5862	104779436	-	PSEEN0141	-	surface adhesion protein
121	 63.68	0	150149..151486	+	445	104779437	-	PSEEN0143	-	type I toxin efflux outer membrane protein TolC
122	 66.25	0	151531..153687	+	718	104779438	-	PSEEN0144	-	type I toxin efflux ATP-binding protein
123	 63.83	0	153677..155053	+	458	104779439	-	PSEEN0145	-	type I toxin efflux membrane fusion protein
124	 65.56	0	155382..156281	+	299	104779440	-	PSEEN0146	-	taurine catabolic dioxygenase
125	 64.80	0	156300..157319	+	339	104779441	-	PSEEN0147	-	ABC transporter, periplasmic binding protein
126	 67.48	0	157326..158189	+	287	104779442	-	PSEEN0148	-	ABC transporter, ATP-binding protein
127	 65.39	0	158203..159066	+	287	104779443	-	PSEEN0149	-	ABC transporter, permease protein
128	 68.45	0	159166..159726	-	186	104779444	-	PSEEN0150	-	transcriptional factor-related protein
129	 67.04	0	159934..160746	+	270	104779445	-	PSEEN0151	-	hypothetical protein
130	 69.18	+1	160965..161402	+	145	104779446	-	PSEEN0152	-	MarR family transcriptional regulator
131	 67.96	0	161399..163486	+	695	104779447	-	PSEEN0153	-	efflux transporter, permease protein
132	 59.62	0	163483..163695	+	70	104779448	-	PSEEN0154	-	hypothetical protein
133	 66.10	0	163692..164567	+	291	104779449	-	PSEEN0155	-	efflux transporter, membrane fusion protein
134	 68.29	0	164564..165982	+	472	104779450	-	PSEEN0156	-	efflux transporter, outer membrane protein
135	 66.47	0	166196..166702	+	168	104779451	-	PSEEN0158	-	disulfide bond formation protein B1 (disulfide oxidoreductase 1)
136	 62.00	0	166934..167404	+	156	104779452	algQ	PSEEN0159	-	anti-RNA polymerase sigma 70 factor
137	 67.27	0	167406..168071	-	221	104779453	-	PSEEN0160	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
138	 67.22	0	168296..169372	+	358	104779454	algP	PSEEN0161	-	alginate regulatory protein AlgP
139	 67.08	0	169348..169827	-	159	104779455	-	PSEEN0162	-	hypothetical protein
140	 66.41	0	169878..171788	+	636	104779456	-	PSEEN0163	-	ABC transporter, ATP-binding protein
141	 65.14	0	171788..172375	+	195	104779457	-	PSEEN0164	-	hypothetical protein
142	 64.14	0	172528..173160	+	210	104779458	-	PSEEN0165	-	amino acid transporter LysE
143	 64.14	0	173241..173993	-	250	104779459	-	PSEEN0166	-	hypothetical protein
144	 68.23	0	173996..175339	-	447	104779460	-	PSEEN0167	-	hypothetical protein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.