IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
744	 62.44	0	861904..862329	+	141	104780060	-	PSEEN0830	-	hypothetical protein
745	 65.68	0	862444..865275	-	943	104780061	-	PSEEN0831	-	hypothetical protein
746	 64.97	0	865272..865979	-	235	104780062	-	PSEEN0832	-	hypothetical protein
747	 68.22	0	865969..867258	-	429	104780063	-	PSEEN0833	-	hypothetical protein
748	 70.57	+1	867542..868336	+	264	104780064	-	PSEEN0834	-	hypothetical protein
749	 61.62	0	868333..868788	+	151	104780065	-	PSEEN0835	-	ribosomal-protein-alanine acetyltransferase RimI
750	 64.35	0	868876..870039	-	387	104780066	-	PSEEN0836	-	hypothetical protein
751	 67.55	0	870631..871536	-	301	104780067	-	PSEEN0838	-	LysR family transcriptional regulator
752	 65.21	0	871719..872336	+	205	104780068	-	PSEEN0839	-	amino acid transporter LysE
753	 67.63	0	872576..873508	-	310	104780069	-	PSEEN0840	-	FecR-like transmembrane sensor
754	 64.44	0	873700..874914	+	404	104780070	fsr	PSEEN0841	-	major facilitator superfamily fosmidomycin/multidrug transport protein
755	 66.06	0	875396..876556	+	386	104780071	-	PSEEN0842	-	major facilitator family transporter
756	 65.23	0	876694..877320	+	208	104780072	-	PSEEN0843	-	DNA-3-methyladenine glycosylase
757	 68.84	+1	877568..878626	+	352	104780073	ada	PSEEN0845	-	O6-methylguanine-DNA methyltransferase
758	 67.29	0	878681..881083	+	800	104780074	-	PSEEN0846	-	ion mechanosensitive channel
759	 65.93	0	881141..882358	-	405	104780075	-	PSEEN0847	-	hypothetical protein
760	 69.46	+1	882532..883962	-	476	104780076	-	PSEEN0848	-	betaine-aldehyde dehydrogenase
761	 67.87	0	883976..885475	-	499	104780077	-	PSEEN0849	-	NCS1 nucleoside transporter
762	 66.41	0	885563..885952	-	129	104780078	-	PSEEN0850	-	hypothetical protein
763	 64.41	0	886288..886908	+	206	104780079	-	PSEEN0851	-	isochorismatase superfamily hydrolase
764	 68.39	0	886933..888093	-	386	104780080	-	PSEEN0852	-	major facilitator transporter
765	 60.82	0	888300..888590	-	96	104780081	-	PSEEN0853	-	hypothetical protein
766	 62.13	0	888759..889859	-	366	104780082	-	PSEEN0854	-	translation-associated GTPase
767	 63.93	0	889882..890466	-	194	104780083	pth	PSEEN0855	-	peptidyl-tRNA hydrolase
768	 58.96	-1	890546..891142	-	198	104780084	rplY	PSEEN0856	-	50S ribosomal protein L25/general stress protein Ctc
769	 59.89	0	891266..892195	-	309	104780085	prs	PSEEN0857	-	ribose-phosphate pyrophosphokinase
770	 61.32	0	892348..893208	-	286	104780086	ipk	PSEEN0858	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
771	 69.42	+1	893213..893830	-	205	104780087	lolB	PSEEN0859	-	outer membrane lipoprotein LolB
772	 67.07	0	893834..895558	-	574	104780088	-	PSEEN0860	-	hypothetical protein
773	 63.20	0	896182..896700	+	172	104780089	-	PSEEN0861	-	hemolysin co-regulated protein 1A
774	 67.33	0	896912..899932	+	1006	104780090	-	PSEEN0862	-	hypothetical protein
775	 58.57	-1	899929..904668	+	1579	104780091	-	PSEEN0863	-	hypothetical protein
776	 45.96	-2	904670..905152	+	160	104780092	-	PSEEN0864	-	hypothetical protein
777	 66.67	0	905281..905367	+	28	104780093	-	PSEEN0866	-	hypothetical protein
778	 45.36	-2	905584..905766	+	60	104780094	-	PSEEN0867	-	hypothetical protein
779	 43.92	-2	906585..907160	+	191	104780095	-	PSEEN0870	-	hypothetical protein
780	 62.38	0	908011..908919	+	302	104780096	-	PSEEN0871	-	hypothetical protein
781	 61.11	0	909624..909893	-	89	104780097	-	PSEEN0872	-	hypothetical protein
782	 62.14	0	910016..910258	-	80	104780098	-	PSEEN0873	-	hypothetical protein
783	 66.98	0	910801..912078	+	425	104780099	hemA	PSEEN0875	-	glutamyl-tRNA reductase
784	 66.02	0	912075..913157	+	360	104780100	prfA	PSEEN0876	-	peptide chain release factor 1
785	 69.68	+1	913158..913988	+	276	104780101	hemK	PSEEN0877	-	methylase of polypeptide chain release factors
786	 67.20	0	913982..914737	+	251	104780102	moeB	PSEEN0878	-	molybdopterin biosynthesis protein MoeB
787	 66.79	0	914730..915527	+	265	104780103	murI	PSEEN0879	-	glutamate racemase
788	 62.75	0	915660..916322	-	220	104780104	-	PSEEN0880	-	short chain dehydrogenase/reductase family oxidoreductase
789	 63.16	0	916343..917797	-	484	104780105	phrB	PSEEN0881	-	deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
790	 67.47	0	917822..918691	-	289	104780106	-	PSEEN0882	-	MerR family transcriptional regulator
791	 65.12	0	918681..919649	-	322	104780107	-	PSEEN0883	-	hypothetical protein
792	 66.87	0	919758..920744	-	328	104780108	-	PSEEN0884	-	hypothetical protein
793	 67.77	0	920932..921837	+	301	104780109	-	PSEEN0885	-	hypothetical protein
794	 65.48	0	921851..922864	+	337	104780110	hemH	PSEEN0886	-	ferrochelatase
795	 64.55	0	922925..924199	-	424	104780111	-	PSEEN0887	-	uracil permease
796	 62.28	0	924202..924840	-	212	104780112	upp	PSEEN0888	-	uracil phosphoribosyltransferase
797	 60.75	0	925006..925563	+	185	104780113	-	PSEEN0889	-	hypoxanthine-guanine phosphoribosyltransferase
798	 64.35	0	925566..926039	+	157	104780114	-	PSEEN0890	-	hypothetical protein
799	 62.21	0	926145..926615	+	156	104780115	-	PSEEN0891	-	hypothetical protein
800	 57.73	-1	926684..926974	+	96	104780116	-	PSEEN0892	-	hypothetical protein
801	 64.35	0	927182..928690	-	502	104780117	mqo-1	PSEEN0893	-	malate:quinone oxidoreductase
802	 66.67	0	929295..929528	-	77	104780118	-	PSEEN0894	-	hypothetical protein
803	 64.79	0	929673..930257	+	194	104780119	-	PSEEN0895	-	lipoprotein
804	 64.25	0	930424..930630	-	68	104780120	-	PSEEN0896	-	hypothetical protein
805	 63.22	0	930788..931048	+	86	104780121	-	PSEEN0897	-	hypothetical protein
806	 64.70	0	931138..932304	-	388	104780122	-	PSEEN0898	-	hypothetical protein
807	 56.28	-1	932430..932612	+	60	104780123	-	PSEEN0900	-	hypothetical protein
808	 64.37	0	932612..932872	+	86	104780124	-	PSEEN0901	-	hypothetical protein
809	 68.44	0	932888..933508	+	206	104780125	-	PSEEN0902	-	hypothetical protein
810	 65.78	0	933602..935743	-	713	104780126	-	PSEEN0903	-	methyl-accepting chemotaxis transducer
811	 63.11	0	935895..936710	+	271	104780127	-	PSEEN0904	-	zinc-dependent peptidase
812	 65.31	0	936818..937405	-	195	104780128	-	PSEEN0905	-	hypothetical protein
813	 66.47	0	937652..938650	-	332	104780129	-	PSEEN0906	-	ribosomal RNA small subunit methyltransferase C
814	 68.74	+1	938702..939667	-	321	104780130	-	PSEEN0907	-	glycerate dehydrogenase
815	 63.81	0	939986..941668	+	560	104780131	-	PSEEN0908	-	acyl-CoA synthetase
816	 63.86	0	941997..943883	+	628	104780132	-	PSEEN0909	-	hypothetical protein
817	 62.93	0	943910..945274	+	454	104780133	-	PSEEN0910	-	hypothetical protein
818	 65.71	0	945541..948258	+	905	104780134	-	PSEEN0911	-	LuxR family transcriptional regulator
819	 63.25	0	948371..949978	+	535	104780135	-	PSEEN0912	-	response regulator/TPR domain-containing protein
820	 61.62	0	949975..950667	+	230	104780136	-	PSEEN0913	-	sensor histidine kinase
821	 65.58	0	951058..951702	+	214	104780137	-	PSEEN0914	-	hydrolase; metallo-beta-lactamase family protein
822	 65.00	0	951798..952517	+	239	104780138	-	PSEEN0915	-	OmpA family outer membrane protein
823	 67.29	0	952666..954756	-	696	104780139	pta	PSEEN0916	-	phosphate acetyltransferase
824	 62.35	0	955090..955575	+	161	104780140	-	PSEEN0918	-	peptidyl-prolyl cis-trans isomerase SlyD (FKBP-type)
825	 61.08	0	955722..956204	+	160	104780141	gpo	PSEEN0919	-	glutathione peroxidase
826	 66.39	0	956339..957442	+	367	104780142	-	PSEEN0920	-	Oye family FMN-linked oxidoreductase
827	 68.66	+1	957411..958613	-	400	104780143	-	PSEEN0921	-	glycosyl transferase, group 1
828	 62.87	0	958793..960109	+	438	104780144	-	PSEEN0922	-	methyl-accepting chemotaxis transducer/sensory box protein
829	 64.88	0	960206..960934	-	242	104780145	-	PSEEN0923	-	putative sulfate transport protein CysZ
830	 65.73	0	961263..962225	+	320	104780146	trxB	PSEEN0924	-	thioredoxin reductase
831	 68.20	0	962348..963196	-	282	104780147	nadC	PSEEN0925	-	nicotinate-nucleotide pyrophosphorylase
832	 66.53	0	963439..965595	+	718	104780148	-	PSEEN0926	-	hypothetical protein
833	 67.37	0	965758..966324	+	188	104780149	ampD	PSEEN0927	-	N-acetyl-anhydromuranmyl-L-alanine amidase
834	 67.27	0	966321..967151	+	276	104780150	-	PSEEN0928	-	inner membrane protein AmpE
835	 66.96	0	967378..969390	+	670	104780151	-	PSEEN0929	-	methyl-accepting chemotaxis protein
836	 68.34	0	969488..970264	-	258	104780152	-	PSEEN0930	-	TatD family deoxyribonuclease
837	 67.97	0	970267..971262	-	331	104780153	-	PSEEN0931	-	DNA-binding transcriptional regulator FruR
838	 71.12	+1	971559..974411	+	950	104780154	-	PSEEN0932	-	phosphotransferase system FruB, fructose-specific EI/HPr/EIIA components
839	 67.72	0	974413..975360	+	315	104780155	-	PSEEN0933	-	1-phosphofructokinase FruK
840	 68.65	+1	975360..977075	+	571	104780156	fruA	PSEEN0934	-	phosphotransferase system FruA, fructose-specific IIBC component
841	 63.51	0	977130..977351	-	73	104780157	-	PSEEN0935	-	hypothetical protein
842	 60.80	0	977556..978032	+	158	104780158	-	PSEEN0936	-	hypothetical protein
843	 66.93	0	978151..979647	-	498	104780159	-	PSEEN0937	-	hypothetical protein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.